Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA240G2584 Erigeron canadensis HOM05D007252 ORTHO05D009074 3.3e-62 241.5 121 100.0
ECA240G2620 Erigeron canadensis HOM05D000132 ORTHO05D000058 1.9e-25 119.4 60 93.3
Lsat_1_v5_gn_0_15441 Lactuca sativa HOM05D007252 ORTHO05D009074 1.8e-23 112.8 60 86.7
HanXRQChr03g0076961 Helianthus annuus HOM05D007252 ORTHO05D009074 2.2e-21 105.9 60 83.3
CANSAT80G1100 Cannabis sativa HOM05D007252 ORTHO05D009074 9.5e-17 90.5 60 71.7
QL08p064685 Quercus lobata HOM05D007252 ORTHO05D009074 1.6e-16 89.7 60 68.3
Cfa020240 Carpinus fangiana HOM05D007252 ORTHO05D009074 2.8e-16 89.0 60 70.0
Gohir.D05G377900 Gossypium hirsutum HOM05D007252 ORTHO05D009074 8.1e-16 87.4 60 70.0
Gorai.009G445700 Gossypium raimondii HOM05D007252 ORTHO05D009074 1.1e-15 87.0 60 68.3
Ciclev10010136m.g Citrus clementina HOM05D007252 ORTHO05D009074 1.4e-15 86.7 60 70.0
COL.COLO4_09763 Corchorus olitorius HOM05D007252 ORTHO05D009074 2.3e-15 85.9 60 65.0
CSS0018987 Camellia sinensis var. sinensis HOM05D007252 ORTHO05D009074 3.1e-15 85.5 60 66.7
CSS0032760 Camellia sinensis var. sinensis HOM05D007252 ORTHO05D009074 3.1e-15 85.5 60 66.7
Gohir.A04G010100 Gossypium hirsutum HOM05D007252 ORTHO05D009074 3.1e-15 85.5 60 68.3
Thecc.07G024200 Theobroma cacao HOM05D007252 ORTHO05D009074 6.8e-15 84.3 60 65.0
Potri.008G011620 Populus trichocarpa HOM05D007252 ORTHO05D009074 8.9e-15 84.0 60 63.3
CAN.G337.42 Capsicum annuum HOM05D007252 ORTHO05D009074 1.2e-14 83.6 60 60.0
MD11G1206600 Malus domestica HOM05D007252 ORTHO05D009074 1.5e-14 83.2 62 62.9
A01p17930 Brassica napus HOM05D007252 ORTHO05D009074 2.6e-14 82.4 60 61.7
BraA01t01748Z Brassica rapa HOM05D007252 ORTHO05D009074 2.6e-14 82.4 60 61.7
Sabra08G0007100 Salix brachista HOM05D000045 ORTHO05D000067 2.6e-14 82.4 60 63.3
Sc07g0002910 Simmondsia chinensis HOM05D007252 ORTHO05D009074 2.6e-14 82.4 111 42.3
PGSC0003DMG402022195 Solanum tuberosum HOM05D007252 ORTHO05D009074 3.4e-14 82.0 60 60.0
Aa31LG5G12260 Aethionema arabicum HOM05D007252 ORTHO05D009074 4.4e-14 81.6 60 60.0
BraA08t34029Z Brassica rapa HOM05D007252 ORTHO05D009074 4.4e-14 81.6 60 61.7
MD03G1190100 Malus domestica HOM05D007252 ORTHO05D009074 4.4e-14 81.6 62 62.9
SalBow8G3523 Salvia bowleyana HOM05D007252 ORTHO05D009074 4.4e-14 81.6 60 65.0
BcaB03g12504 Brassica carinata HOM05D007252 ORTHO05D009074 5.8e-14 81.3 60 61.7
BcaC09g50629 Brassica carinata HOM05D007252 ORTHO05D009074 5.8e-14 81.3 60 61.7
BcaC09g52252 Brassica carinata HOM05D007252 ORTHO05D009074 5.8e-14 81.3 60 61.7
A08p20750 Brassica napus HOM05D007252 ORTHO05D009074 5.8e-14 81.3 60 61.7
C01p22730 Brassica napus HOM05D007252 ORTHO05D009074 5.8e-14 81.3 60 61.7
BolC1t02202H Brassica oleracea HOM05D007252 ORTHO05D009074 5.8e-14 81.3 60 61.7
ECA232G1400 Erigeron canadensis HOM05D003799 ORTHO05D001964 5.8e-14 81.3 59 78.0
Prupe.4G229900 Prunus persica HOM05D007252 ORTHO05D009074 1.3e-13 80.1 60 60.0
Nn7g36100 Nelumbo nucifera HOM05D002789 ORTHO05D003185 1.7e-13 79.7 60 63.3
VMungo0540G2390 Vigna mungo HOM05D007252 ORTHO05D009074 1.7e-13 79.7 63 61.9
AL7G26180 Arabidopsis lyrata HOM05D007252 ORTHO05D009074 2.2e-13 79.3 60 60.0
Carub.0007s1418 Capsella rubella HOM05D007252 ORTHO05D009074 2.2e-13 79.3 60 60.0
Manes.03G134300 Manihot esculenta HOM05D007252 ORTHO05D009074 2.2e-13 79.3 65 61.5
BcaC07g38242 Brassica carinata HOM05D007252 ORTHO05D009074 4.9e-13 78.2 60 60.0
C08p09910 Brassica napus HOM05D007252 ORTHO05D009074 4.9e-13 78.2 60 60.0
FAN21G1608 Fragaria x ananassa HOM05D007252 ORTHO05D009074 4.9e-13 78.2 60 60.0
Phvul.006G051100 Phaseolus vulgaris HOM05D007252 ORTHO05D009074 4.9e-13 78.2 63 60.3
RcHm_v2.0_Chr5g0041991 Rosa chinensis HOM05D007252 ORTHO05D009074 4.9e-13 78.2 60 60.0
AUR62015933 Chenopodium quinoa HOM05D007252 ORTHO05D009074 1.1e-12 77.0 60 60.0
AUR62040676 Chenopodium quinoa HOM05D007252 ORTHO05D009074 1.1e-12 77.0 60 60.0
FvH4_3g23810 Fragaria vesca HOM05D007252 ORTHO05D009074 1.1e-12 77.0 60 58.3
FAN11G0552 Fragaria x ananassa HOM05D007252 ORTHO05D009074 1.1e-12 77.0 60 58.3
BolC8t48668H Brassica oleracea HOM05D007252 ORTHO05D009074 1.4e-12 76.6 57 61.4
CARHR234280 Cardamine hirsuta HOM05D007252 ORTHO05D009074 1.4e-12 76.6 60 60.0
Ciclev10003084m.g Citrus clementina HOM05D007252 ORTHO05D009074 1.4e-12 76.6 60 61.7
Migut.M01689 Erythranthe guttata HOM05D007252 ORTHO05D009074 2.4e-12 75.9 60 61.7
EL10Ac4g07630 Beta vulgaris HOM05D007252 ORTHO05D009074 1.2e-11 73.6 126 40.5
Eucgr.F03517 Eucalyptus grandis HOM05D007252 ORTHO05D009074 2.7e-11 72.4 60 53.3
Lalb_Chr15g0081811 Lupinus albus HOM05D007252 ORTHO05D009074 3.5e-11 72.0 60 56.7
Lalb_Chr15g0081831 Lupinus albus HOM05D007252 ORTHO05D009074 6.0e-11 71.2 71 52.1
Lalb_Chr15g0081851 Lupinus albus HOM05D007252 ORTHO05D009074 6.0e-11 71.2 71 52.1
Lalb_Chr15g0081871 Lupinus albus HOM05D007252 ORTHO05D009074 6.0e-11 71.2 71 52.1
Actinidia39080 Actinidia chinensis HOM05D007252 ORTHO05D009074 7.8e-11 70.9 54 59.3
SHI26548 Sapria himalayana HOM05D007252 ORTHO05D009074 7.8e-11 70.9 50 66.0
Nn2g15499 Nelumbo nucifera HOM05D007252 ORTHO05D009074 1.3e-10 70.1 60 55.0
Ca_20134_v3 Cicer arietinum L. HOM05D007252 ORTHO05D009074 1.7e-10 69.7 60 56.7
Glyma.18G085000 Glycine max HOM05D007252 ORTHO05D009074 1.7e-10 69.7 63 54.0
Lj6g0008035 Lotus japonicus HOM05D007252 ORTHO05D009074 1.7e-10 69.7 60 56.7
TPR.G23623 Trifolium pratense HOM05D007252 ORTHO05D009074 1.5e-09 66.6 60 55.0
Actinidia07909 Actinidia chinensis HOM05D007252 ORTHO05D009074 2.5e-09 65.9 53 58.5
Cpa.g.sc104.83 Carica papaya HOM05D007252 ORTHO05D009074 2.5e-09 65.9 53 56.6
ECA232G2168 Erigeron canadensis HOM05D008479 ORTHO05D009074 2.5e-09 65.9 57 68.4
Cpa.g.c35309 Carica papaya HOM05D007252 ORTHO05D009074 3.3e-09 65.5 46 65.2
Psat3g156800 Pisum sativum HOM05D007252 ORTHO05D009074 4.3e-09 65.1 57 56.1
Cfa016655 Carpinus fangiana HOM05D007252 ORTHO05D009074 9.5e-09 63.9 53 52.8
ECA233G4938 Erigeron canadensis HOM05D003799 ORTHO05D001964 1.6e-08 63.2 50 74.0
Medtr1g058260 Medicago truncatula HOM05D007252 ORTHO05D009074 1.6e-08 63.2 57 50.9
TWI74G0966 Tripterygium wilfordii HOM05D007252 ORTHO05D009074 1.6e-08 63.2 53 52.8
CiPaw.10G013800 Carya illinoinensis HOM05D007252 ORTHO05D009074 2.1e-08 62.8 53 49.1
HPP92_012649 Vanilla planifolia HOM05D007252 ORTHO05D009074 2.1e-08 62.8 60 50.0
AT3G11591 Arabidopsis thaliana HOM05D007252 ORTHO05D009074 2.8e-08 62.4 55 49.1
ECA247G1053 Erigeron canadensis HOM05D000176 ORTHO05D000106 2.8e-08 62.4 43 79.1
TAR633G2179 Trochodendron aralioides HOM05D002789 ORTHO05D003185 3.6e-08 62.0 50 60.0
ECA246G2648 Erigeron canadensis HOM05D003799 ORTHO05D001964 4.7e-08 61.6 45 80.0
Potri.006G207600 Populus trichocarpa HOM05D007252 ORTHO05D009074 6.2e-08 61.2 57 52.6
Sed0008758 Sechium edule HOM05D007252 ORTHO05D009074 6.2e-08 61.2 49 55.1
BcaC09g48182 Brassica carinata HOM05D007252 ORTHO05D009074 1.4e-07 60.1 55 45.5
BNapus_Darmor_BZH_scaffold_145p00090 Brassica napus HOM05D007252 ORTHO05D009074 1.4e-07 60.1 55 45.5
BolC1t05305H Brassica oleracea HOM05D007252 ORTHO05D009074 1.4e-07 60.1 55 45.5
BraA01t04175Z Brassica rapa HOM05D007252 ORTHO05D009074 1.4e-07 60.1 55 45.5
ECA236G3715 Erigeron canadensis HOM05D003799 ORTHO05D001964 1.4e-07 60.1 54 66.7
Gohir.D11G337600 Gossypium hirsutum HOM05D007252 ORTHO05D009074 2.3e-07 59.3 53 49.1
Gorai.007G367600 Gossypium raimondii HOM05D007252 ORTHO05D009074 2.3e-07 59.3 53 49.1
Manes.09G050900 Manihot esculenta HOM05D007252 ORTHO05D009074 2.3e-07 59.3 53 52.8
BcaB04g21127 Brassica carinata HOM05D007252 ORTHO05D009074 3.1e-07 58.9 55 45.5
CiPaw.10G013500 Carya illinoinensis HOM05D007252 ORTHO05D009074 4.0e-07 58.5 53 47.2
Phvul.007G231000 Phaseolus vulgaris HOM05D007252 ORTHO05D009074 5.2e-07 58.2 60 45.0
CARHR086150 Cardamine hirsuta HOM05D007252 ORTHO05D009074 6.8e-07 57.8 55 47.3
Duzib093G1663 Durio zibethinus HOM05D007252 ORTHO05D009074 6.8e-07 57.8 53 52.8
Lj5g0009107 Lotus japonicus HOM05D007252 ORTHO05D009074 8.9e-07 57.4 56 50.0
COL.COLO4_29654 Corchorus olitorius HOM05D007252 ORTHO05D009074 2.0e-06 56.2 53 49.1
ECA233G3420 Erigeron canadensis HOM05D008479 ORTHO05D010479 2.6e-06 55.8 54 61.1
Medtr3g055700 Medicago truncatula HOM05D007252 ORTHO05D009074 2.6e-06 55.8 57 49.1
Glyma.02G200400 Glycine max HOM05D007252 ORTHO05D009074 4.4e-06 55.1 56 42.9
Gohir.A11G318300 Gossypium hirsutum HOM05D007252 ORTHO05D009074 4.4e-06 55.1 53 47.2
PGR142G0020 Punica granatum HOM05D007252 ORTHO05D009074 4.4e-06 55.1 53 47.2
FAN17G0382 Fragaria x ananassa HOM05D007252 ORTHO05D009074 5.8e-06 54.7 46 56.5
Aa31LG3G4990 Aethionema arabicum HOM05D007252 ORTHO05D009074 7.6e-06 54.3 55 47.3
ECA233G0424 Erigeron canadensis HOM05D003799 ORTHO05D001964 7.6e-06 54.3 41 73.2
Thecc.05G097600 Theobroma cacao HOM05D007252 ORTHO05D009074 7.6e-06 54.3 53 49.1
Sc20g0006500 Simmondsia chinensis HOM05D007252 ORTHO05D009074 9.9e-06 53.9 57 47.4


User provided reference genes

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