Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA240G2514 Erigeron canadensis HOM05D004385 ORTHO05D005245 3.6e-310 1067.4 535 100.0
HanXRQChr03g0067331 Helianthus annuus HOM05D004385 ORTHO05D005245 2.0e-236 822.4 529 77.7
Lsat_1_v5_gn_7_57600 Lactuca sativa HOM05D004385 ORTHO05D005245 3.0e-224 781.9 526 75.3
Dinv26468 Davidia involucrata HOM05D004385 ORTHO05D005245 4.9e-214 748.0 533 70.5
Hma1.2p1_0284F.1_g113840 Hydrangea macrophylla HOM05D004385 ORTHO05D005245 4.6e-204 714.9 512 70.9
HanXRQChr03g0067221 Helianthus annuus HOM05D004385 ORTHO05D005245 1.7e-203 713.0 534 68.7
ECA240G4307 Erigeron canadensis HOM05D004385 ORTHO05D005245 1.1e-202 710.3 519 68.8
HanXRQChr03g0067391 Helianthus annuus HOM05D004385 ORTHO05D005245 2.4e-197 692.6 525 65.9
Potri.018G138206 Populus trichocarpa HOM05D004385 ORTHO05D005245 7.0e-197 691.0 538 63.9
Sopen07g005830 Solanum pennellii HOM05D004385 ORTHO05D005245 2.0e-196 689.5 530 64.7
Haze_19053 Corylus avellana HOM05D004385 ORTHO05D005245 4.6e-196 688.3 528 65.2
Thecc.09G194100 Theobroma cacao HOM05D004385 ORTHO05D005245 4.6e-196 688.3 534 65.5
QL11p009243 Quercus lobata HOM05D004385 ORTHO05D005245 2.3e-195 686.0 515 67.2
CSS0002376 Camellia sinensis var. sinensis HOM05D004385 ORTHO05D005245 3.9e-195 685.3 523 67.5
vmacro22292 Vaccinium macrocarpon HOM05D004385 ORTHO05D005245 9.5e-194 680.6 498 69.1
TAR626G1834 Trochodendron aralioides HOM05D004385 ORTHO05D005245 1.6e-193 679.9 538 64.7
Cpa.g.sc123.33 Carica papaya HOM05D004385 ORTHO05D005245 2.1e-193 679.5 483 68.5
Glyma.12G049000 Glycine max HOM05D004385 ORTHO05D005245 1.4e-192 676.8 540 64.1
Prupe.1G065500 Prunus persica HOM05D004385 ORTHO05D005245 3.1e-192 675.6 531 63.1
Gohir.A05G001100 Gossypium hirsutum HOM05D004385 ORTHO05D005245 6.8e-192 674.5 535 64.5
Gohir.D05G001400 Gossypium hirsutum HOM05D004385 ORTHO05D005245 8.9e-192 674.1 535 64.5
Gorai.009G001300 Gossypium raimondii HOM05D004385 ORTHO05D005245 3.4e-191 672.2 535 64.3
MD16G1239400 Malus domestica HOM05D004385 ORTHO05D005245 3.4e-191 672.2 536 63.1
Manes.03G078300 Manihot esculenta HOM05D004385 ORTHO05D005245 4.4e-191 671.8 538 63.8
Rhsim05G0069600 Rhododendron simsii HOM05D004385 ORTHO05D005245 7.5e-191 671.0 490 68.0
Oeu028831.1 Olea europaea HOM05D004385 ORTHO05D005245 1.7e-190 669.8 539 63.6
Lj3g0012868 Lotus japonicus HOM05D004385 ORTHO05D005245 3.7e-190 668.7 527 63.4
DCAR_023663 Daucus carota HOM05D004385 ORTHO05D005245 6.4e-190 667.9 518 65.6
Medtr4g068230 Medicago truncatula HOM05D004385 ORTHO05D005245 1.9e-189 666.4 528 63.4
TWI32G0217 Tripterygium wilfordii HOM05D004385 ORTHO05D005245 7.1e-189 664.5 536 62.5
arahy.Tifrunner.gnm1.ann1.77JVZB Arachis hypogaea HOM05D004385 ORTHO05D005245 9.2e-189 664.1 492 67.1
Haze_19054 Corylus avellana HOM05D004385 ORTHO05D005245 1.6e-188 663.3 539 62.7
Atru.chr7.972_Atru.chr7.973 Acer truncatum HOM05D004385 ORTHO05D005245 3.5e-188 662.1 535 62.4
Ca_20811_v3 Cicer arietinum L. HOM05D004385 ORTHO05D005245 6.0e-188 661.4 484 67.6
COL.COLO4_24913 Corchorus olitorius HOM05D004385 ORTHO05D005245 6.0e-188 661.4 533 63.8
RcHm_v2.0_Chr4g0397951 Rosa chinensis HOM05D004385 ORTHO05D005245 1.3e-187 660.2 530 61.3
MSTRG.10464 Avicennia marina HOM05D004385 ORTHO05D005245 2.3e-187 659.4 537 64.1
arahy.Tifrunner.gnm1.ann1.D17V0C Arachis hypogaea HOM05D004385 ORTHO05D005245 3.9e-187 658.7 491 66.6
Eucgr.C02022 Eucalyptus grandis HOM05D004385 ORTHO05D005245 6.6e-187 657.9 529 61.8
Nn1g09800 Nelumbo nucifera HOM05D004385 ORTHO05D005245 1.1e-186 657.1 483 67.9
Lalb_Chr19g0138471 Lupinus albus HOM05D004385 ORTHO05D005245 1.5e-186 656.8 484 66.9
Phvul.011G051400 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 2.5e-186 656.0 530 63.4
VMungo1127G2221 Vigna mungo HOM05D004385 ORTHO05D005245 2.5e-186 656.0 529 63.3
TPR.G34256 Trifolium pratense HOM05D004385 ORTHO05D005245 1.2e-185 653.7 533 61.9
CANSAT80G1931 Cannabis sativa HOM05D004385 ORTHO05D005245 2.8e-185 652.5 486 66.5
Duzib168G1467 Durio zibethinus HOM05D004385 ORTHO05D005245 3.6e-185 652.1 468 68.6
Psat0s5298g0040 Pisum sativum HOM05D004385 ORTHO05D005245 1.8e-184 649.8 484 67.1
Medtr4g068240 Medicago truncatula HOM05D004385 ORTHO05D005245 5.2e-184 648.3 529 60.9
Cc00_g00420 Coffea canephora HOM05D004385 ORTHO05D005245 2.6e-183 646.0 492 65.4
Medtr4g068270 Medicago truncatula HOM05D004385 ORTHO05D005245 4.4e-183 645.2 517 61.9
FvH4_4g06230 Fragaria vesca HOM05D004385 ORTHO05D005245 5.8e-183 644.8 497 63.6
CiPaw.15G156000 Carya illinoinensis HOM05D004385 ORTHO05D005245 1.1e-181 640.6 529 62.6
Cpa.g.sc123.32 Carica papaya HOM05D004385 ORTHO05D005245 7.1e-181 637.9 546 59.2
Cc00_g00450 Coffea canephora HOM05D004385 ORTHO05D005245 7.1e-181 637.9 505 63.2
Sed0013454 Sechium edule HOM05D004385 ORTHO05D005245 9.2e-181 637.5 539 60.7
CsaV3_2G035400 Cucumis sativus L. HOM05D004385 ORTHO05D005245 7.8e-180 634.4 531 60.3
ClCG06G014050 Citrullus lanatus HOM05D004385 ORTHO05D005245 5.1e-179 631.7 499 63.1
FAN12G0289 Fragaria x ananassa HOM05D004385 ORTHO05D005245 8.6e-179 630.9 525 60.4
Nitab4.5_0001205g0010 Nicotiana tabacum HOM05D004385 ORTHO05D005245 8.6e-179 630.9 487 66.3
Manes.03G078400 Manihot esculenta HOM05D004385 ORTHO05D005245 1.6e-177 626.7 484 65.1
Nitab4.5_0000413g0040 Nicotiana tabacum HOM05D004385 ORTHO05D005245 3.6e-177 625.5 531 62.0
Peaxi162Scf00320g00412 Petunia axillaris HOM05D004385 ORTHO05D005245 4.7e-177 625.2 517 62.7
Migut.B00849 Erythranthe guttata HOM05D004385 ORTHO05D005245 1.4e-176 623.6 474 65.6
EL10Ac2g03630 Beta vulgaris HOM05D004385 ORTHO05D005245 6.9e-176 621.3 504 61.3
PGR142G0778 Punica granatum HOM05D004385 ORTHO05D005245 9.0e-176 620.9 500 61.0
AUR62028001 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.7e-174 616.7 491 62.5
CANSAT80G0643 Cannabis sativa HOM05D004385 ORTHO05D005245 2.2e-174 616.3 526 58.9
MBI11_g07424_MAGBIO Magnolia biondii HOM05D004385 ORTHO05D005245 2.9e-174 615.9 523 60.4
Phvul.011G051300 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 4.9e-174 615.1 490 62.0
MELO3C019214.2 Cucumis melo HOM05D004385 ORTHO05D005245 4.2e-173 612.1 541 57.7
VMungo1127G1209 Vigna mungo HOM05D004385 ORTHO05D005245 4.2e-173 612.1 483 62.3
Solyc07g015980.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 7.1e-173 611.3 530 59.4
Sed0010902 Sechium edule HOM05D004385 ORTHO05D005245 1.2e-172 610.5 486 62.1
SGA_v2.0_scaffold21G09624 Striga asiatica HOM05D004385 ORTHO05D005245 3.5e-172 609.0 531 60.5
Sed0010048 Sechium edule HOM05D004385 ORTHO05D005245 3.0e-171 605.9 484 61.0
ClCG06G014070 Citrullus lanatus HOM05D004385 ORTHO05D005245 1.3e-169 600.5 485 61.9
Psat0s8631g0040 Pisum sativum HOM05D004385 ORTHO05D005245 2.8e-169 599.4 516 59.7
Sabra18G0119900 Salix brachista HOM05D004385 ORTHO05D005245 2.8e-169 599.4 540 57.6
Phvul.011G051100 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 1.8e-168 596.7 490 61.2
HPP92_003174 Vanilla planifolia HOM05D004385 ORTHO05D005245 5.8e-167 591.7 534 58.2
Sed0018057 Sechium edule HOM05D004385 ORTHO05D005245 1.2e-164 583.9 500 60.0
Peaxi162Scf00320g00411 Petunia axillaris HOM05D004385 ORTHO05D005245 1.1e-162 577.4 543 54.1
TPR.G10229 Trifolium pratense HOM05D004385 ORTHO05D005245 4.3e-162 575.5 594 52.7
Hund03234 Selenicereus undatus HOM05D004385 ORTHO05D005245 2.4e-160 569.7 491 58.5
EL10Ac2g03633 Beta vulgaris HOM05D004385 ORTHO05D005245 1.3e-158 563.9 486 59.3
ATR1147G022 Amborella trichopoda HOM05D004385 ORTHO05D005245 4.9e-158 562.0 487 58.9
AUR62028000 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.9e-157 560.1 496 58.9
Potri.018G145600 Populus trichocarpa HOM05D004385 ORTHO05D005245 4.2e-157 558.9 416 66.1
EL10Ac2g03634 Beta vulgaris HOM05D004385 ORTHO05D005245 2.7e-156 556.2 468 59.8
RhsimUnG0051500 Rhododendron simsii HOM05D004385 ORTHO05D005245 1.8e-155 553.5 497 60.8
EL10Ac2g03631 Beta vulgaris HOM05D004385 ORTHO05D005245 2.5e-154 549.7 489 55.2
SEGI_12293 Sequoiadendron giganteum HOM05D004385 ORTHO05D005245 2.1e-153 546.6 495 56.8
Migut.L01912 Erythranthe guttata HOM05D004385 ORTHO05D005245 1.1e-152 544.3 433 64.2
Peaxi162Scf00320g00316 Petunia axillaris HOM05D004385 ORTHO05D005245 1.3e-150 537.3 488 56.1
CDE06G1948 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 2.5e-149 533.1 454 59.7
AUR62028006 Chenopodium quinoa HOM05D004385 ORTHO05D005245 5.5e-149 531.9 488 55.5
AUR62020716 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.2e-148 530.8 488 55.5
AUR62027997 Chenopodium quinoa HOM05D004385 ORTHO05D005245 4.3e-146 522.3 496 55.4
Rhsim01G0218300 Rhododendron simsii HOM05D004385 ORTHO05D005245 4.3e-146 522.3 408 65.9
Cpa.g.sc123.30 Carica papaya HOM05D004385 ORTHO05D005245 3.1e-144 516.2 533 52.3
EL10Ac2g03632 Beta vulgaris HOM05D004385 ORTHO05D005245 3.4e-143 512.7 493 55.0
Peaxi162Scf00320g00317 Petunia axillaris HOM05D004385 ORTHO05D005245 5.0e-142 508.8 544 50.6
AagrBONN_evm.TU.Sc2ySwM_117.1864 Anthoceros agrestis HOM05D004385 ORTHO05D005245 8.5e-142 508.1 506 52.6
Mapoly0055s0075 Marchantia polymorpha HOM05D004385 ORTHO05D005245 2.8e-137 493.0 500 51.2
EL10Ac2g04866 Beta vulgaris HOM05D004385 ORTHO05D005245 1.8e-136 490.3 516 51.9
Ah.11g043630 Amaranthus hybridus HOM05D004385 ORTHO05D005245 2.4e-136 490.0 514 51.8
Rhsim03G0268600 Rhododendron simsii HOM05D004385 ORTHO05D005245 2.4e-136 490.0 426 61.0
Atru.chr9.1512 Acer truncatum HOM05D004385 ORTHO05D005245 4.5e-135 485.7 515 53.2
EL10Ac2g04868 Beta vulgaris HOM05D004385 ORTHO05D005245 2.2e-134 483.4 528 50.6
Pp3c15_21680 Physcomitrium patens HOM05D004385 ORTHO05D005245 3.8e-134 482.6 495 50.3
Cpa.g.sc123.31 Carica papaya HOM05D004385 ORTHO05D005245 8.5e-134 481.5 453 57.4
SGA_v2.0_scaffold21G09621 Striga asiatica HOM05D004385 ORTHO05D005245 9.4e-133 478.0 455 54.7
Ah.11g043620 Amaranthus hybridus HOM05D004385 ORTHO05D005245 1.8e-128 463.8 477 51.4
Sc06g0001470 Simmondsia chinensis HOM05D004385 ORTHO05D005245 3.4e-127 459.5 390 58.5
Zm00001eb064440 Zea mays HOM05D004385 ORTHO05D005245 4.7e-124 449.1 395 58.5
PGSC0003DMG400021019 Solanum tuberosum HOM05D004385 ORTHO05D005245 1.7e-121 440.7 342 65.5
PGSC0003DMG400022081 Solanum tuberosum HOM05D004385 ORTHO05D005245 4.7e-116 422.5 457 49.7
CAN.G1581.3 Capsicum annuum HOM05D004385 ORTHO05D005245 1.2e-114 417.9 331 64.0
TAR626G1477 Trochodendron aralioides HOM05D004385 ORTHO05D005245 1.8e-112 410.6 289 70.6
Cfa020737 Carpinus fangiana HOM05D004385 ORTHO05D005245 5.3e-112 409.1 327 62.7
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 1.6e-111 407.5 644 38.0
TPR.G34194 Trifolium pratense HOM05D004385 ORTHO05D005245 2.3e-107 393.7 324 62.0
Haze_18802 Corylus avellana HOM05D004385 ORTHO05D005245 9.8e-106 388.3 392 54.6
Atru.chr9.1488 Acer truncatum HOM05D004385 ORTHO05D005245 4.2e-101 372.9 407 51.1
unitig_578.g16395 Utricularia gibba HOM05D004385 ORTHO05D005245 1.6e-100 370.9 331 58.6
Solyc07g016050.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 3.6e-100 369.8 342 54.1
CsaV3_1G004600 Cucumis sativus L. HOM05D004385 ORTHO05D005245 8.9e-99 365.2 289 64.0
FAN17G2530 Fragaria x ananassa HOM05D004385 ORTHO05D005245 5.0e-94 349.4 339 54.0
Aqoxy2G04068 Aquilegia oxysepala HOM05D004385 ORTHO05D005245 5.2e-91 339.3 439 45.6
Migut.L00572 Erythranthe guttata HOM05D004385 ORTHO05D005245 1.7e-86 324.3 229 64.2
CDE06G1657 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 3.6e-84 316.6 447 43.8
Migut.L00391 Erythranthe guttata HOM05D004385 ORTHO05D005245 4.9e-81 306.2 220 63.2
Solyc07g016080.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.6e-76 291.2 278 51.8
CAN.G1581.2 Capsicum annuum HOM05D004385 ORTHO05D005245 3.5e-71 273.5 167 77.2
Solyc07g016030.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 7.8e-71 272.3 345 43.2
Cre02.g105150 Chlamydomonas reinhardtii HOM05D004385 ORTHO05D005245 1.3e-70 271.6 603 31.8
SalBow5G2207 Salvia bowleyana HOM05D004385 ORTHO05D005245 2.6e-66 257.3 177 71.8
EL10Ac6g13794 Beta vulgaris HOM05D004385 ORTHO05D005245 4.4e-66 256.5 268 53.7
PRCOL_00000420 Prasinoderma coloniale HOM05D004385 ORTHO05D005245 4.4e-66 256.5 482 35.7
MELO3C017386.2 Cucumis melo HOM05D004385 ORTHO05D005245 1.1e-64 251.9 169 69.8
FAN07G2444 Fragaria x ananassa HOM05D004385 ORTHO05D005245 1.4e-64 251.5 156 75.0
FAN22G1494 Fragaria x ananassa HOM05D004385 ORTHO05D005245 3.2e-64 250.4 156 74.4
Psat1g029120 Pisum sativum HOM05D000870 ORTHO05D000715 3.9e-62 243.4 179 64.2
Sopen07g016620 Solanum pennellii HOM05D004385 ORTHO05D005245 1.5e-61 241.5 145 77.2
unitig_578.g16396 Utricularia gibba HOM05D004385 ORTHO05D005245 4.3e-53 213.4 182 61.0
Sopen00g013700 Solanum pennellii HOM05D004385 ORTHO05D005245 1.8e-51 208.0 145 66.9
Solyc07g016020.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 6.7e-46 189.5 146 63.7
AUR62020718 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.2e-42 178.7 193 46.6
AUR62028004 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.5e-42 178.3 132 65.9
Solyc07g016040.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.3e-41 175.3 118 70.3
Sopen07g016630 Solanum pennellii HOM05D004385 ORTHO05D005245 1.0e-38 165.6 187 49.2
Psat0s3373g0120 Pisum sativum HOM05D000870 ORTHO05D005245 6.2e-36 156.4 179 45.3
AUR62028003 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.8e-35 154.8 194 46.9
AUR62020721 Chenopodium quinoa HOM05D004385 ORTHO05D005245 3.1e-35 154.1 107 66.4
AUR62020720 Chenopodium quinoa HOM05D004385 ORTHO05D005245 7.6e-34 149.4 171 45.6
Solyc07g032590.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.6e-31 141.7 142 54.2
PGSC0003DMG400007349 Solanum tuberosum HOM05D004385 ORTHO05D005245 2.1e-23 114.8 76 64.5
AUR62027998 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.4e-16 92.0 82 46.3
Medtr5g096240 Medicago truncatula HOM05D004385 ORTHO05D005245 2.6e-13 81.3 73 52.1
Medtr4g117010 Medicago truncatula HOM05D004385 ORTHO05D005245 3.3e-13 80.9 73 54.8
GSVIVG01026776001 Vitis vinifera HOM05D004385 ORTHO05D005245 3.3e-13 80.9 66 54.5
Oeu000968.1 Olea europaea HOM05D004385 ORTHO05D005245 2.9e-09 67.8 54 61.1


User provided reference genes

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