Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA240G2483 Erigeron canadensis HOM05D003288 ORTHO05D003734 1.7e-107 392.9 232 100.0
Lsat_1_v5_gn_4_26961 Lactuca sativa HOM05D003288 ORTHO05D003734 7.1e-29 131.7 138 50.0
Lsat_1_v5_gn_3_125960 Lactuca sativa HOM05D003288 ORTHO05D003734 3.5e-28 129.4 125 53.6
HanXRQChr13g0424601 Helianthus annuus HOM05D003288 ORTHO05D003734 9.7e-26 121.3 117 53.0
ECA240G3548 Erigeron canadensis HOM05D003288 ORTHO05D003734 1.1e-24 117.9 137 46.0
ECA234G0526 Erigeron canadensis HOM05D003288 ORTHO05D003734 1.4e-24 117.5 137 46.7
Rhsim12G0111000 Rhododendron simsii HOM05D003288 ORTHO05D003734 1.4e-24 117.5 136 47.1
DCAR_030537 Daucus carota HOM05D003288 ORTHO05D003734 4.1e-24 115.9 120 50.8
HanXRQChr03g0092531 Helianthus annuus HOM05D003288 ORTHO05D003734 9.0e-24 114.8 134 48.5
ECA238G4239 Erigeron canadensis HOM05D003288 ORTHO05D003734 1.2e-23 114.4 139 46.8
ECA240G0593 Erigeron canadensis HOM05D003288 ORTHO05D003734 1.5e-23 114.0 137 44.5
CSS0016947 Camellia sinensis var. sinensis HOM05D003288 ORTHO05D003734 2.6e-23 113.2 132 47.0
HanXRQChr03g0092541 Helianthus annuus HOM05D003288 ORTHO05D003734 4.5e-23 112.5 165 44.2
Lsat_1_v5_gn_3_104940 Lactuca sativa HOM05D003288 ORTHO05D003734 4.5e-23 112.5 132 46.2
Rhsim10G0182400 Rhododendron simsii HOM05D003288 ORTHO05D003734 1.0e-22 111.3 136 44.9
vmacro23304 Vaccinium macrocarpon HOM05D003288 ORTHO05D003734 2.2e-22 110.2 132 44.7
Actinidia17186 Actinidia chinensis HOM05D003288 ORTHO05D003734 3.8e-22 109.4 118 49.2
CSS0026322 Camellia sinensis var. sinensis HOM05D003288 ORTHO05D003734 5.0e-22 109.0 120 48.3
Lj2g0015416 Lotus japonicus HOM05D003288 ORTHO05D003734 5.0e-22 109.0 138 42.8
Dinv28220 Davidia involucrata HOM05D003288 ORTHO05D003734 1.1e-21 107.8 136 42.6
Lj7A364T81 Lonicera japonica HOM05D003288 ORTHO05D003734 2.5e-21 106.7 132 45.5
Medtr2g063920 Medicago truncatula HOM05D003288 ORTHO05D003734 3.2e-21 106.3 138 42.0
Sabra17G0111500 Salix brachista HOM05D003288 ORTHO05D003734 3.2e-21 106.3 134 43.3
Sabra17G0111800 Salix brachista HOM05D003288 ORTHO05D003734 3.2e-21 106.3 134 43.3
Sabra17G0114500 Salix brachista HOM05D003288 ORTHO05D003734 3.2e-21 106.3 134 43.3
VMungo1383G3441 Vigna mungo HOM05D003288 ORTHO05D003734 4.2e-21 105.9 138 41.3
Phvul.001G228800 Phaseolus vulgaris HOM05D003288 ORTHO05D003734 5.5e-21 105.5 138 41.3
Potri.017G137100 Populus trichocarpa HOM05D003288 ORTHO05D003734 5.5e-21 105.5 132 43.2
Rhsim10G0181900 Rhododendron simsii HOM05D003288 ORTHO05D003734 5.5e-21 105.5 113 48.7
arahy.Tifrunner.gnm1.ann1.BXR7J4 Arachis hypogaea HOM05D003288 ORTHO05D003734 7.2e-21 105.1 137 43.8
DCAR_014148 Daucus carota HOM05D003288 ORTHO05D003734 9.4e-21 104.8 120 45.8
arahy.Tifrunner.gnm1.ann1.NZ46DJ Arachis hypogaea HOM05D003288 ORTHO05D003734 1.2e-20 104.4 137 43.8
COL.COLO4_06958 Corchorus olitorius HOM05D003288 ORTHO05D003734 1.2e-20 104.4 134 41.8
Medtr2g093230 Medicago truncatula HOM05D003288 ORTHO05D003734 1.2e-20 104.4 138 42.0
Glyma.11G214200 Glycine max HOM05D003288 ORTHO05D003734 1.6e-20 104.0 138 42.0
Glyma.18G042400 Glycine max HOM05D003288 ORTHO05D003734 1.6e-20 104.0 138 42.0
TWI74G0189 Tripterygium wilfordii HOM05D003288 ORTHO05D003734 2.1e-20 103.6 127 41.7
Ca_03338_v3 Cicer arietinum L. HOM05D003288 ORTHO05D003734 2.7e-20 103.2 127 42.5
Glyma.17G080975 Glycine max HOM05D003288 ORTHO05D003734 2.7e-20 103.2 138 42.0
Lj5g0021383 Lotus japonicus HOM05D003288 ORTHO05D003734 2.7e-20 103.2 138 42.0
Lj2C515T4 Lonicera japonica HOM05D003288 ORTHO05D003734 3.6e-20 102.8 117 46.2
Medtr6g091980 Medicago truncatula HOM05D003288 ORTHO05D003734 3.6e-20 102.8 132 42.4
Medtr2g063823 Medicago truncatula HOM05D003288 ORTHO05D003734 4.6e-20 102.4 132 42.4
arahy.Tifrunner.gnm1.ann1.F6RFY9 Arachis hypogaea HOM05D003288 ORTHO05D003734 7.9e-20 101.7 137 43.1
arahy.Tifrunner.gnm1.ann1.G6QY2G Arachis hypogaea HOM05D003288 ORTHO05D003734 7.9e-20 101.7 137 43.1
Cpa.g.sc116.89 Carica papaya HOM05D003288 ORTHO05D003734 7.9e-20 101.7 120 44.2
QL01p032763 Quercus lobata HOM05D003288 ORTHO05D003734 7.9e-20 101.7 127 44.1
Prupe.3G163900 Prunus persica HOM05D003288 ORTHO05D003734 1.0e-19 101.3 127 44.9
Glyma.05G018700 Glycine max HOM05D003288 ORTHO05D003734 1.4e-19 100.9 138 40.6
Medtr2g063863 Medicago truncatula HOM05D003288 ORTHO05D003734 1.4e-19 100.9 132 41.7
TPR.G8950 Trifolium pratense HOM05D003288 ORTHO05D003734 1.4e-19 100.9 146 38.4
CsaV3_4G000640 Cucumis sativus L. HOM05D003288 ORTHO05D003734 1.8e-19 100.5 134 41.8
Psat0s1991g0080 Pisum sativum HOM05D003288 ORTHO05D003734 1.8e-19 100.5 132 41.7
TPR.G37900 Trifolium pratense HOM05D003288 ORTHO05D003734 1.8e-19 100.5 140 37.9
Eucgr.F02892 Eucalyptus grandis HOM05D003288 ORTHO05D003734 2.3e-19 100.1 112 47.3
Lalb_Chr05g0212271 Lupinus albus HOM05D003288 ORTHO05D003734 2.3e-19 100.1 140 41.4
Psat1g016080 Pisum sativum HOM05D003288 ORTHO05D003734 2.3e-19 100.1 131 41.2
MELO3C017972.2 Cucumis melo HOM05D003288 ORTHO05D003734 3.0e-19 99.8 128 43.0
Lalb_Chr15g0085041 Lupinus albus HOM05D003288 ORTHO05D003734 3.0e-19 99.8 137 40.9
Nn4g23260 Nelumbo nucifera HOM05D003288 ORTHO05D003734 3.0e-19 99.8 127 40.9
ClCG10G010670 Citrullus lanatus HOM05D003288 ORTHO05D003734 3.9e-19 99.4 128 42.2
Ciclev10011340m.g Citrus clementina HOM05D003288 ORTHO05D003734 5.1e-19 99.0 134 41.0
Migut.A00479 Erythranthe guttata HOM05D003288 ORTHO05D003734 5.1e-19 99.0 125 42.4
MD09G1266100 Malus domestica HOM05D003288 ORTHO05D003734 5.1e-19 99.0 127 43.3
FvH4_6g33230 Fragaria vesca HOM05D003288 ORTHO05D003734 6.7e-19 98.6 127 44.1
Manes.02G079400 Manihot esculenta HOM05D003288 ORTHO05D003734 6.7e-19 98.6 124 40.3
Gohir.D12G148400 Gossypium hirsutum HOM05D003288 ORTHO05D003734 8.8e-19 98.2 134 38.8
RcHm_v2.0_Chr2g0142951 Rosa chinensis HOM05D003288 ORTHO05D003734 8.8e-19 98.2 117 47.0
Haze_14295 Corylus avellana HOM05D003288 ORTHO05D003734 1.1e-18 97.8 138 40.6
MBI13_g04499_MAGBIO Magnolia biondii HOM05D003288 ORTHO05D003734 1.5e-18 97.4 120 43.3
MBI13_g04500_MAGBIO Magnolia biondii HOM05D003288 ORTHO05D003734 1.5e-18 97.4 120 43.3
PSO210G3300 Papaver somniferum HOM05D003288 ORTHO05D003734 1.5e-18 97.4 114 45.6
QL02p059844 Quercus lobata HOM05D003288 ORTHO05D003734 1.5e-18 97.4 137 39.4
Duzib268G1591 Durio zibethinus HOM05D003288 ORTHO05D003734 1.9e-18 97.1 120 41.7
Sed0014607 Sechium edule HOM05D003288 ORTHO05D003734 1.9e-18 97.1 132 40.9
Nn5g28678 Nelumbo nucifera HOM05D003288 ORTHO05D003734 2.5e-18 96.7 118 44.1
unitig_748.g8456 Utricularia gibba HOM05D003288 ORTHO05D003734 2.5e-18 96.7 119 42.0
Aqoxy2G03361 Aquilegia oxysepala HOM05D003288 ORTHO05D003734 3.3e-18 96.3 132 39.4
Carub.0008s1584 Capsella rubella HOM05D003288 ORTHO05D003734 4.3e-18 95.9 117 45.3
Gohir.A12G143700 Gossypium hirsutum HOM05D003288 ORTHO05D003734 4.3e-18 95.9 134 38.1
QL01p003767 Quercus lobata HOM05D003288 ORTHO05D003734 4.3e-18 95.9 137 40.1
SalBow4G2398 Salvia bowleyana HOM05D003288 ORTHO05D003734 5.7e-18 95.5 125 40.0
Thecc.04G002400 Theobroma cacao HOM05D003288 ORTHO05D003734 5.7e-18 95.5 131 41.2
Ah.03g141820 Amaranthus hybridus HOM05D003288 ORTHO05D003734 7.4e-18 95.1 115 45.2
AT5G55490 Arabidopsis thaliana HOM05D003288 ORTHO05D003734 7.4e-18 95.1 127 40.9
BraA03t10702Z Brassica rapa HOM05D003288 ORTHO05D003734 9.7e-18 94.7 118 42.4
SHI30119 Sapria himalayana HOM05D003288 ORTHO05D003734 9.7e-18 94.7 117 42.7
Sc18g0007110 Simmondsia chinensis HOM05D003288 ORTHO05D003734 9.7e-18 94.7 116 44.8
THA.LOC109115998 Tarenaya hassleriana HOM05D003288 ORTHO05D003734 9.7e-18 94.7 121 41.3
EL10As8g23882 Beta vulgaris HOM05D003288 ORTHO05D003734 1.3e-17 94.4 117 43.6
Cfa007776 Carpinus fangiana HOM05D003288 ORTHO05D003734 1.3e-17 94.4 138 40.6
Atru.chr6.3343 Acer truncatum HOM05D003288 ORTHO05D003734 1.7e-17 94.0 129 38.0
Aqoxy3G02762 Aquilegia oxysepala HOM05D003288 ORTHO05D003734 2.2e-17 93.6 142 38.0
PGR083G1244 Punica granatum HOM05D003288 ORTHO05D003734 2.2e-17 93.6 108 46.3
AUR62004111 Chenopodium quinoa HOM05D003288 ORTHO05D003734 2.8e-17 93.2 115 45.2
THA.LOC104805978 Tarenaya hassleriana HOM05D003288 ORTHO05D003734 2.8e-17 93.2 121 40.5
Oeu009426.1 Olea europaea HOM05D003288 ORTHO05D003734 3.7e-17 92.8 121 40.5
PSO210G3953 Papaver somniferum HOM05D003288 ORTHO05D003734 3.7e-17 92.8 111 45.0
A03p14030 Brassica napus HOM05D003288 ORTHO05D003734 4.8e-17 92.4 121 40.5
C03p16470 Brassica napus HOM05D003288 ORTHO05D003734 4.8e-17 92.4 121 40.5
BolC3t14067H Brassica oleracea HOM05D003288 ORTHO05D003734 4.8e-17 92.4 121 40.5
FAN05G3577 Fragaria x ananassa HOM05D003288 ORTHO05D003734 4.8e-17 92.4 94 47.9
AL8G31020 Arabidopsis lyrata HOM05D003288 ORTHO05D003734 8.2e-17 91.7 117 43.6
AUR62017809 Chenopodium quinoa HOM05D003288 ORTHO05D003734 1.1e-16 91.3 118 41.5
AUR62035243 Chenopodium quinoa HOM05D003288 ORTHO05D003734 1.4e-16 90.9 115 44.3
Cc02_g09200 Coffea canephora HOM05D003288 ORTHO05D003734 1.8e-16 90.5 117 41.0
BraA10t43361Z Brassica rapa HOM05D003288 ORTHO05D003734 2.4e-16 90.1 127 38.6
CANSAT64G0297 Cannabis sativa HOM05D003288 ORTHO05D003734 2.4e-16 90.1 121 40.5
TAR623G0700 Trochodendron aralioides HOM05D003288 ORTHO05D003734 3.1e-16 89.7 118 39.8
TAR629G1838 Trochodendron aralioides HOM05D003288 ORTHO05D003734 3.1e-16 89.7 135 36.3
AUR62023637 Chenopodium quinoa HOM05D003288 ORTHO05D003734 4.1e-16 89.4 115 43.5
Thhalv10015474m.g Eutrema salsugineum HOM05D003288 ORTHO05D003734 4.1e-16 89.4 149 36.9
AUR62007625 Chenopodium quinoa HOM05D003288 ORTHO05D003734 5.3e-16 89.0 115 43.5
Gorai.008G159700 Gossypium raimondii HOM05D003288 ORTHO05D003734 5.3e-16 89.0 208 30.8
FAN09G4788 Fragaria x ananassa HOM05D003288 ORTHO05D003734 6.9e-16 88.6 94 46.8
FAN14G0969 Fragaria x ananassa HOM05D003288 ORTHO05D003734 6.9e-16 88.6 94 46.8
MD17G1110600 Malus domestica HOM05D003288 ORTHO05D003734 1.2e-15 87.8 132 38.6
TAR629G0745 Trochodendron aralioides HOM05D003288 ORTHO05D003734 1.5e-15 87.4 118 38.1
Duzib138G1645 Durio zibethinus HOM05D003288 ORTHO05D003734 2.0e-15 87.0 133 36.1
Ah.02g124870 Amaranthus hybridus HOM05D003288 ORTHO05D003734 2.6e-15 86.7 96 47.9
Prupe.3G204300 Prunus persica HOM05D003288 ORTHO05D003734 2.6e-15 86.7 139 36.7
Thecc.04G002200 Theobroma cacao HOM05D003288 ORTHO05D003734 2.6e-15 86.7 134 36.6
Atru.chr7.1988 Acer truncatum HOM05D003288 ORTHO05D003734 3.4e-15 86.3 129 34.1
FAN02G3499 Fragaria x ananassa HOM05D003288 ORTHO05D003734 3.4e-15 86.3 94 45.7
Hund06475 Selenicereus undatus HOM05D003288 ORTHO05D003734 3.4e-15 86.3 115 40.0
SGA_v2.0_scaffold96G29122 Striga asiatica HOM05D003288 ORTHO05D003734 3.4e-15 86.3 116 39.7
CAN.G1256.15 Capsicum annuum HOM05D003288 ORTHO05D003734 4.5e-15 85.9 143 39.2
GSVIVG01030016001 Vitis vinifera HOM05D003288 ORTHO05D003734 5.9e-15 85.5 120 37.5
CDE07G0160 Ceratophyllum demersum HOM05D003288 ORTHO05D003734 7.7e-15 85.1 132 35.6
Medtr4g009310 Medicago truncatula HOM05D003288 ORTHO05D003734 7.7e-15 85.1 87 46.0
ATR0598G225 Amborella trichopoda HOM05D003288 ORTHO05D003734 1.3e-14 84.3 86 44.2
Sp6g17370 Schrenkiella parvula HOM05D003288 ORTHO05D003734 2.2e-14 83.6 97 42.3
Aa31LG2G2840 Aethionema arabicum HOM05D003288 ORTHO05D003734 3.8e-14 82.8 132 34.1
CDE06G2565 Ceratophyllum demersum HOM05D003288 ORTHO05D003734 3.8e-14 82.8 118 37.3
PSO447G0361 Papaver somniferum HOM05D003288 ORTHO05D003734 1.1e-13 81.3 114 40.4
A10p16000 Brassica napus HOM05D003288 ORTHO05D003734 1.9e-13 80.5 120 38.3
CARHR268800 Cardamine hirsuta HOM05D003288 ORTHO05D003734 1.9e-13 80.5 103 40.8
HPP92_013124 Vanilla planifolia HOM05D003288 ORTHO05D003734 1.9e-13 80.5 120 37.5
RcHm_v2.0_Chr2g0157531 Rosa chinensis HOM05D003288 ORTHO05D003734 3.2e-13 79.7 120 37.5
Haze_12714 Corylus avellana HOM05D003288 ORTHO05D003734 4.2e-13 79.3 139 33.8
Nitab4.5_0001781g0030 Nicotiana tabacum HOM05D003288 ORTHO05D003734 4.2e-13 79.3 124 36.3
QL09p034880 Quercus lobata HOM05D003288 ORTHO05D003734 4.2e-13 79.3 139 32.4
BcaB08g35905 Brassica carinata HOM05D003288 ORTHO05D003734 5.5e-13 79.0 97 40.2
BcaNung05847 Brassica carinata HOM05D003288 ORTHO05D003734 5.5e-13 79.0 97 40.2
C09p46140 Brassica napus HOM05D003288 ORTHO05D003734 5.5e-13 79.0 97 40.2
BolC9t57480H Brassica oleracea HOM05D003288 ORTHO05D003734 5.5e-13 79.0 97 40.2
Nitab4.5_0002640g0060 Nicotiana tabacum HOM05D003288 ORTHO05D003734 5.5e-13 79.0 132 37.1
PSO210G4855 Papaver somniferum HOM05D003288 ORTHO05D003734 5.5e-13 79.0 117 39.3
A10p12610 Brassica napus HOM05D003288 ORTHO05D003734 9.4e-13 78.2 109 38.5
Peaxi162Scf00120g00813 Petunia axillaris HOM05D003288 ORTHO05D003734 3.6e-12 76.3 117 36.8
PGSC0003DMG400000983 Solanum tuberosum HOM05D003288 ORTHO05D003734 3.6e-12 76.3 114 39.5
CSS0043791 Camellia sinensis var. sinensis HOM05D003288 ORTHO05D003734 6.1e-12 75.5 119 39.5
SEGI_20345 Sequoiadendron giganteum HOM05D003288 ORTHO05D003734 7.9e-12 75.1 105 39.0
FAN02G4572 Fragaria x ananassa HOM05D003288 ORTHO05D003734 1.0e-11 74.7 136 33.1
Solyc11g006310.2 Solanum lycopersicum HOM05D003288 ORTHO05D003734 1.0e-11 74.7 147 33.3
FvH4_6g41730 Fragaria vesca HOM05D003288 ORTHO05D003734 3.9e-11 72.8 136 32.4
FAN14G3219 Fragaria x ananassa HOM05D003288 ORTHO05D003734 3.9e-11 72.8 136 32.4
BcaC01g06370 Brassica carinata HOM05D003288 ORTHO05D003734 1.5e-10 70.9 97 39.2
Zm00001eb314230 Zea mays HOM05D003288 ORTHO05D003734 1.5e-10 70.9 136 30.9
FAN09G2221 Fragaria x ananassa HOM05D003288 ORTHO05D003734 4.4e-10 69.3 136 32.4
Os09g0442400 Oryza sativa ssp. japonica HOM05D003288 ORTHO05D003734 1.3e-09 67.8 127 31.5
Mapoly0046s0117 Marchantia polymorpha HOM05D003288 ORTHO05D003734 3.7e-09 66.2 118 35.6
ClCG05G010510 Citrullus lanatus HOM05D003288 ORTHO05D003734 1.5e-07 60.8 78 39.7
Os07g0668100 Oryza sativa ssp. japonica HOM05D003288 ORTHO05D003734 2.0e-07 60.5 137 27.0


User provided reference genes

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