Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA240G2259 Erigeron canadensis HOM05D003737 ORTHO05D004640 1.1e-237 826.2 430 100.0
HanXRQChr03g0073711 Helianthus annuus HOM05D003737 ORTHO05D004640 1.6e-154 550.1 450 68.2
HanXRQChr09g0247521 Helianthus annuus HOM05D003737 ORTHO05D004640 4.4e-133 478.8 429 61.3
Hma1.2p1_0233F.1_g098040 Hydrangea macrophylla HOM05D003737 ORTHO05D004640 4.0e-118 429.1 461 54.4
Dinv20457 Davidia involucrata HOM05D003737 ORTHO05D004640 1.3e-116 424.1 466 54.7
Lj9C660G5 Lonicera japonica HOM05D003737 ORTHO05D004640 2.0e-109 400.2 461 52.9
ClCG08G008580 Citrullus lanatus HOM05D003737 ORTHO05D004640 1.3e-108 397.5 476 51.5
Lsat_1_v5_gn_7_65181 Lactuca sativa HOM05D003737 ORTHO05D004640 2.2e-108 396.7 362 64.1
CSS0038854 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 2.9e-108 396.4 459 52.9
CSS0046027 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 2.9e-108 396.4 459 52.9
MELO3C019928.2 Cucumis melo HOM05D003737 ORTHO05D004640 3.2e-107 392.9 475 51.2
Eucgr.J00319 Eucalyptus grandis HOM05D003737 ORTHO05D004640 4.2e-107 392.5 456 51.5
MD07G1053000 Malus domestica HOM05D003737 ORTHO05D004640 1.0e-105 387.9 457 51.0
Sed0006452 Sechium edule HOM05D003737 ORTHO05D004640 1.3e-105 387.5 476 50.2
Manes.05G191000 Manihot esculenta HOM05D003737 ORTHO05D004640 3.0e-105 386.3 471 50.3
TAR633G0465 Trochodendron aralioides HOM05D003737 ORTHO05D004640 5.1e-105 385.6 470 50.2
CsaV3_6G004570 Cucumis sativus L. HOM05D003737 ORTHO05D004640 6.6e-105 385.2 479 49.9
MD02G1266700 Malus domestica HOM05D003737 ORTHO05D004640 1.5e-104 384.0 459 50.5
TWI32G0890 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 2.5e-104 383.3 460 49.8
Cfa010430 Carpinus fangiana HOM05D003737 ORTHO05D004640 4.3e-104 382.5 466 49.8
Actinidia12270 Actinidia chinensis HOM05D003737 ORTHO05D004640 7.3e-104 381.7 460 50.2
Rhsim07G0072700 Rhododendron simsii HOM05D003737 ORTHO05D004640 7.3e-104 381.7 449 52.6
Sed0018433 Sechium edule HOM05D003737 ORTHO05D004640 1.3e-103 380.9 451 51.0
QL04p051647 Quercus lobata HOM05D003737 ORTHO05D004640 3.6e-103 379.4 467 50.1
CANSAT78G1307 Cannabis sativa HOM05D003737 ORTHO05D004640 6.2e-103 378.6 465 48.8
Peaxi162Scf00220g00010 Petunia axillaris HOM05D003737 ORTHO05D004640 4.0e-102 375.9 460 49.1
Sc09g0004980 Simmondsia chinensis HOM05D003737 ORTHO05D004640 4.0e-102 375.9 471 49.5
Actinidia31420 Actinidia chinensis HOM05D003737 ORTHO05D004640 1.2e-101 374.4 458 48.7
TWI34G0525 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 1.2e-101 374.4 459 48.4
Gohir.D06G180700 Gossypium hirsutum HOM05D003737 ORTHO05D004640 2.6e-101 373.2 465 48.0
Gorai.010G212200 Gossypium raimondii HOM05D003737 ORTHO05D004640 4.5e-101 372.5 465 48.2
Atru.chr12.1119 Acer truncatum HOM05D003737 ORTHO05D004640 2.2e-100 370.2 461 49.0
Prupe.2G056900 Prunus persica HOM05D003737 ORTHO05D004640 3.8e-100 369.4 461 48.6
CANSAT56G0630 Cannabis sativa HOM05D003737 ORTHO05D004640 8.4e-100 368.2 461 48.8
Gohir.A06G171900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 1.4e-99 367.5 463 47.5
VMungo0647G1094 Vigna mungo HOM05D003737 ORTHO05D004640 4.2e-99 365.9 465 48.8
Sabra08G0006600 Salix brachista HOM05D003737 ORTHO05D004640 9.3e-99 364.8 450 48.4
Glyma.13G185300 Glycine max HOM05D003737 ORTHO05D004640 1.2e-98 364.4 467 48.0
PGSC0003DMG402027528 Solanum tuberosum HOM05D003737 ORTHO05D004640 1.6e-98 364.0 466 45.9
Thecc.10G131100 Theobroma cacao HOM05D003737 ORTHO05D004640 2.7e-98 363.2 467 47.5
Potri.010G247900 Populus trichocarpa HOM05D003737 ORTHO05D004640 3.5e-98 362.8 462 47.8
CiPaw.13G048500 Carya illinoinensis HOM05D003737 ORTHO05D004640 7.9e-98 361.7 464 48.1
PGR044G1985 Punica granatum HOM05D003737 ORTHO05D004640 7.9e-98 361.7 460 48.0
vmacro13791 Vaccinium macrocarpon HOM05D003737 ORTHO05D004640 7.9e-98 361.7 513 45.0
Gorai.012G020700 Gossypium raimondii HOM05D003737 ORTHO05D004640 1.0e-97 361.3 460 46.3
Duzib106G0442 Durio zibethinus HOM05D003737 ORTHO05D004640 2.3e-97 360.1 462 46.8
Cpa.g.sc33.135 Carica papaya HOM05D003737 ORTHO05D004640 3.0e-97 359.8 458 47.8
Sabra10G0193400 Salix brachista HOM05D003737 ORTHO05D004640 3.0e-97 359.8 464 47.6
Duzib128G0945 Durio zibethinus HOM05D003737 ORTHO05D004640 6.7e-97 358.6 469 47.1
Phvul.011G188500 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 1.9e-96 357.1 471 48.0
AUR62041279 Chenopodium quinoa HOM05D003737 ORTHO05D004640 2.5e-96 356.7 467 50.5
Gohir.A05G398100 Gossypium hirsutum HOM05D003737 ORTHO05D004640 2.5e-96 356.7 455 45.7
Gohir.D04G017900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 2.5e-96 356.7 460 45.9
Potri.008G010900 Populus trichocarpa HOM05D003737 ORTHO05D004640 4.3e-96 355.9 466 47.0
Solyc01g096780.4 Solanum lycopersicum HOM05D003737 ORTHO05D004640 4.3e-96 355.9 472 45.1
COL.COLO4_05028 Corchorus olitorius HOM05D003737 ORTHO05D004640 5.6e-96 355.5 461 48.6
Sopen01g040480 Solanum pennellii HOM05D003737 ORTHO05D004640 7.4e-96 355.1 468 44.7
EL10Ac4g08805 Beta vulgaris HOM05D003737 ORTHO05D004640 2.1e-95 353.6 469 46.7
TAR636G0393 Trochodendron aralioides HOM05D003737 ORTHO05D004640 2.1e-95 353.6 469 48.6
Hund06832 Selenicereus undatus HOM05D003737 ORTHO05D004640 3.7e-95 352.8 495 45.5
Glyma.15G223100 Glycine max HOM05D003737 ORTHO05D004640 1.8e-94 350.5 465 46.0
Lj3g0019804 Lotus japonicus HOM05D003737 ORTHO05D004640 5.3e-94 349.0 455 45.7
MSTRG.20485 Avicennia marina HOM05D003737 ORTHO05D004640 2.0e-93 347.1 450 47.3
CiPaw.14G038200 Carya illinoinensis HOM05D003737 ORTHO05D004640 3.4e-93 346.3 466 46.4
Medtr8g043510 Medicago truncatula HOM05D003737 ORTHO05D004640 3.4e-93 346.3 461 47.1
MBI19_g24737_MAGBIO Magnolia biondii HOM05D003737 ORTHO05D004640 4.5e-93 345.9 466 46.1
Lalb_Chr03g0032471 Lupinus albus HOM05D003737 ORTHO05D004640 5.8e-93 345.5 451 46.8
DCAR_003288 Daucus carota HOM05D003737 ORTHO05D004640 7.6e-93 345.1 464 47.0
Lalb_Chr01g0007591 Lupinus albus HOM05D003737 ORTHO05D004640 3.2e-91 339.7 468 45.3
RcHm_v2.0_Chr1g0330551 Rosa chinensis HOM05D003737 ORTHO05D004640 1.2e-90 337.8 462 46.3
Migut.B01171 Erythranthe guttata HOM05D003737 ORTHO05D004640 2.1e-90 337.0 439 45.6
PSO170G6472 Papaver somniferum HOM05D003737 ORTHO05D004640 2.7e-90 336.7 452 46.5
PSO675G8349 Papaver somniferum HOM05D003737 ORTHO05D004640 4.6e-90 335.9 474 46.2
Oeu013042.2 Olea europaea HOM05D003737 ORTHO05D004640 6.0e-90 335.5 489 42.5
PSO017G3614 Papaver somniferum HOM05D003737 ORTHO05D004640 1.0e-89 334.7 460 44.8
Aa31LG11G5690 Aethionema arabicum HOM05D003737 ORTHO05D004640 1.3e-89 334.3 463 44.5
Nitab4.5_0004903g0010 Nicotiana tabacum HOM05D003737 ORTHO05D004640 2.3e-89 333.6 458 44.5
FAN06G1525 Fragaria x ananassa HOM05D003737 ORTHO05D004640 3.9e-89 332.8 453 45.5
BolC5t34394H Brassica oleracea HOM05D003737 ORTHO05D004640 6.7e-89 332.0 453 44.4
Haze_03384 Corylus avellana HOM05D003737 ORTHO05D004640 6.7e-89 332.0 592 39.0
FvH4_7g04870 Fragaria vesca HOM05D003737 ORTHO05D004640 2.5e-88 330.1 453 45.5
FAN10G1609 Fragaria x ananassa HOM05D003737 ORTHO05D004640 2.5e-88 330.1 451 45.7
PSO170G3077 Papaver somniferum HOM05D003737 ORTHO05D004640 2.5e-88 330.1 457 44.6
PSO782G4010 Papaver somniferum HOM05D003737 ORTHO05D004640 5.7e-88 328.9 450 46.0
Psat4g141920 Pisum sativum HOM05D003737 ORTHO05D004640 9.6e-88 328.2 466 47.0
C05p57390 Brassica napus HOM05D005327 ORTHO05D006655 1.6e-87 327.4 453 43.7
BraA05t22639Z Brassica rapa HOM05D003737 ORTHO05D004640 3.7e-87 326.2 451 43.9
Nitab4.5_0002687g0030 Nicotiana tabacum HOM05D003737 ORTHO05D004640 1.1e-86 324.7 465 43.2
Ah.04g162720 Amaranthus hybridus HOM05D000296 ORTHO05D000175 3.1e-86 323.2 526 41.6
RcHm_v2.0_Chr1g0324281 Rosa chinensis HOM05D003737 ORTHO05D004640 6.9e-86 322.0 454 45.8
A05p38490 Brassica napus HOM05D005327 ORTHO05D006655 1.2e-85 321.2 451 43.9
Thhalv10013430m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 1.5e-85 320.9 468 42.9
ECA236G2275 Erigeron canadensis HOM05D003737 ORTHO05D004640 3.4e-85 319.7 293 57.0
Aa31LG3G3660 Aethionema arabicum HOM05D003737 ORTHO05D004640 7.6e-85 318.5 463 42.8
Sp6g37810 Schrenkiella parvula HOM05D003737 ORTHO05D004640 2.9e-84 316.6 451 43.9
AL6G14700 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 8.4e-84 315.1 463 42.5
CAN.G134.41 Capsicum annuum HOM05D003737 ORTHO05D004640 8.4e-84 315.1 306 53.6
arahy.Tifrunner.gnm1.ann1.3J71J7 Arachis hypogaea HOM05D003737 ORTHO05D004640 3.2e-83 313.2 422 44.5
Carub.0006s0393 Capsella rubella HOM05D003737 ORTHO05D004640 4.2e-83 312.8 468 40.8
CARHR208270 Cardamine hirsuta HOM05D003737 ORTHO05D004640 4.2e-83 312.8 465 41.7
arahy.Tifrunner.gnm1.ann1.J916II Arachis hypogaea HOM05D003737 ORTHO05D004640 5.5e-83 312.4 422 44.5
C09p71760 Brassica napus HOM05D003737 ORTHO05D004081 7.1e-83 312.0 455 44.0
CARHR085310 Cardamine hirsuta HOM05D003737 ORTHO05D004640 3.5e-82 309.7 457 42.0
BolC9t59927H Brassica oleracea HOM05D003737 ORTHO05D004081 4.6e-82 309.3 455 43.5
AT5G04990 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 1.0e-81 308.1 456 41.9
BraA10t45159Z Brassica rapa HOM05D003737 ORTHO05D004081 1.3e-81 307.8 456 43.4
Thhalv10020697m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 1.3e-81 307.8 456 41.2
AL3G22200 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 1.8e-81 307.4 451 42.6
Duzib128G0026 Durio zibethinus HOM05D003737 ORTHO05D004640 2.3e-81 307.0 390 47.2
HPP92_021189 Vanilla planifolia HOM05D003737 ORTHO05D004640 2.3e-81 307.0 417 45.6
AL532U10020 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 3.0e-81 306.6 450 42.0
SGA_v2.0_scaffold182G39819 Striga asiatica HOM05D003737 ORTHO05D004640 3.0e-81 306.6 447 42.1
A10p31150 Brassica napus HOM05D003737 ORTHO05D004081 3.9e-81 306.2 455 43.5
Lsat_1_v5_gn_1_105000 Lactuca sativa HOM05D003737 ORTHO05D004640 3.9e-81 306.2 343 49.9
Aqoxy2G00024 Aquilegia oxysepala HOM05D003737 ORTHO05D004640 5.1e-81 305.8 383 47.8
Carub.0003s0996 Capsella rubella HOM05D003737 ORTHO05D004640 3.3e-80 303.1 455 40.9
TPR.G25035 Trifolium pratense HOM05D003737 ORTHO05D004640 7.4e-80 302.0 324 50.9
TWI63G1132 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 7.4e-80 302.0 428 45.3
unitig_22.g5336 Utricularia gibba HOM05D003737 ORTHO05D004640 4.8e-79 299.3 358 46.1
AT3G10730 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 6.3e-79 298.9 453 42.6
ATR0307G049 Amborella trichopoda HOM05D003737 ORTHO05D004640 8.2e-79 298.5 471 43.7
SGA_v2.0_scaffold309G48158 Striga asiatica HOM05D003737 ORTHO05D004640 1.1e-78 298.1 447 41.8
unitig_749.g13793 Utricularia gibba HOM05D003737 ORTHO05D004640 1.1e-78 298.1 403 43.7
Os01g0267600 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 3.1e-78 296.6 364 44.5
CDE09G1399 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 6.9e-78 295.4 427 45.4
BcaB05g21740 Brassica carinata HOM05D003737 ORTHO05D004640 2.0e-77 293.9 449 41.4
SHI21216 Sapria himalayana HOM05D003737 ORTHO05D004640 5.9e-77 292.4 478 43.1
Lsat_1_v5_gn_1_105040 Lactuca sativa HOM05D003737 ORTHO05D004640 7.7e-77 292.0 345 46.7
Zm00001eb128110 Zea mays HOM05D003737 ORTHO05D004640 7.7e-77 292.0 360 46.1
CANSAT78G0409 Cannabis sativa HOM05D003737 ORTHO05D004640 1.3e-76 291.2 281 54.4
Sp3g09060 Schrenkiella parvula HOM05D003737 ORTHO05D004640 1.9e-75 287.3 456 40.1
THA.LOC104823158 Tarenaya hassleriana HOM05D003737 ORTHO05D004640 1.1e-72 278.1 454 40.7
Os05g0270200 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 1.3e-71 274.6 418 42.8
vmacro23127 Vaccinium macrocarpon HOM05D003737 ORTHO05D002937 2.6e-69 266.9 367 44.7
Ciclev10001582m.g Citrus clementina HOM05D003737 ORTHO05D004640 3.8e-68 263.1 325 50.2
Zm00001eb233650 Zea mays HOM05D003737 ORTHO05D004640 3.6e-66 256.5 430 40.9
BcaC06g32213 Brassica carinata HOM05D003737 ORTHO05D004640 3.7e-63 246.5 418 41.1
Mapoly0147s0033 Marchantia polymorpha HOM05D003737 ORTHO05D004640 2.4e-62 243.8 313 45.7
Lsat_1_v5_gn_4_103680 Lactuca sativa HOM05D003737 ORTHO05D004640 9.1e-62 241.9 244 54.5
SEGI_05544 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 9.1e-62 241.9 389 40.9
CDE08G0077 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 1.5e-61 241.1 344 46.2
DCAR_022276 Daucus carota HOM05D003737 ORTHO05D004640 1.3e-60 238.0 238 53.4
Ca_24114_v3 Cicer arietinum L. HOM05D003737 ORTHO05D004640 2.2e-60 237.3 374 44.7
DCAR_022277 Daucus carota HOM05D003737 ORTHO05D004640 2.5e-59 233.8 215 58.1
Nn6g33270 Nelumbo nucifera HOM05D003737 ORTHO05D004640 9.4e-59 231.9 372 44.9
SMO266G0096 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.0e-57 228.4 316 42.1
SMO104G0002 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.8e-57 227.6 316 42.1
SMO356G0438 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 5.2e-57 226.1 304 40.8
Pp3c11_22530 Physcomitrium patens HOM05D003737 ORTHO05D004640 1.2e-53 214.9 383 39.7
FAN03G1506 Fragaria x ananassa HOM05D003737 ORTHO05D004640 2.6e-53 213.8 444 36.7
Pp3c7_4170 Physcomitrium patens HOM05D003737 ORTHO05D004640 5.9e-53 212.6 425 37.6
SMO119G0482 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 5.9e-53 212.6 289 42.6
DCAR_014025 Daucus carota HOM05D003737 ORTHO05D004640 4.2e-51 206.5 251 44.6
unitig_26.g9749 Utricularia gibba HOM05D003737 ORTHO05D004640 1.2e-48 198.4 276 40.2
PGR083G2251 Punica granatum HOM05D003737 ORTHO05D004640 2.6e-48 197.2 201 50.7
AagrBONN_evm.TU.Sc2ySwM_344.2065 Anthoceros agrestis HOM05D003737 ORTHO05D004640 2.4e-46 190.7 322 37.3
RcHm_v2.0_Chr2g0101681 Rosa chinensis HOM05D003737 ORTHO05D004640 1.6e-45 188.0 192 51.6
GSVIVG01001935001 Vitis vinifera HOM05D003737 ORTHO05D004640 2.7e-45 187.2 134 64.9
SEGI_23640 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 4.5e-45 186.4 201 50.7
HPP92_012444 Vanilla planifolia HOM05D003737 ORTHO05D004640 2.2e-44 184.1 355 36.9
QL93p0223_0017 Quercus lobata HOM05D003737 ORTHO05D004640 1.4e-41 174.9 377 35.8
BcaC06g32214 Brassica carinata HOM05D003737 ORTHO05D004640 3.1e-38 163.7 335 36.1
BolC1t05361H Brassica oleracea HOM05D003737 ORTHO05D004640 5.9e-37 159.5 275 38.2
RcHm_v2.0_Chr2g0101131 Rosa chinensis HOM05D003737 ORTHO05D004640 2.5e-35 154.1 134 55.2
FvH4_1g13360 Fragaria vesca HOM05D003737 ORTHO05D004640 1.0e-28 132.1 203 39.9
SGA_v2.0_scaffold195G40842 Striga asiatica HOM05D003737 ORTHO05D004640 2.9e-28 130.6 248 36.7
Ciclev10003487m.g Citrus clementina HOM05D003737 ORTHO05D004640 1.2e-24 118.6 93 60.2
MCO09G802 Micromonas commoda HOM05D003737 ORTHO05D004640 4.4e-24 116.7 205 35.6
AUR62034111 Chenopodium quinoa HOM05D003737 ORTHO05D004640 1.9e-22 111.3 97 59.8
PRCOL_00004494 Prasinoderma coloniale HOM05D003737 ORTHO05D004640 8.6e-20 102.4 189 35.4
FAN23G2857 Fragaria x ananassa HOM05D003737 ORTHO05D004640 5.6e-19 99.8 182 36.3
Cfa015121 Carpinus fangiana HOM05D003737 ORTHO05D004640 7.3e-19 99.4 65 70.8
Phvul.007G106800 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 4.9e-15 86.7 64 62.5
C08p01570 Brassica napus HOM05D003737 ORTHO05D004640 2.1e-13 81.3 74 54.1
Thhalv10015457m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 4.6e-13 80.1 76 48.7
Haze_10688 Corylus avellana HOM05D003737 ORTHO05D004640 4.7e-10 70.1 144 37.5
Atru.chr12.1692 Acer truncatum HOM05D003737 ORTHO05D004640 2.3e-09 67.8 55 60.0
CAN.G481.43 Capsicum annuum HOM05D000879 ORTHO05D002043 3.7e-07 60.5 54 55.6


User provided reference genes

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