Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA240G2126 Erigeron canadensis HOM05D002505 ORTHO05D007115 3.8e-191 671.4 348 100.0
HanXRQChr02g0047181 Helianthus annuus HOM05D002505 ORTHO05D007115 2.3e-148 529.3 346 74.3
Lsat_1_v5_gn_6_9040 Lactuca sativa HOM05D002505 ORTHO05D007115 3.4e-123 445.7 347 65.4
Actinidia22196 Actinidia chinensis HOM05D002505 ORTHO05D007115 3.1e-121 439.1 352 62.5
QL02p027659 Quercus lobata HOM05D002505 ORTHO05D007115 1.1e-118 430.6 354 62.7
Haze_09143 Corylus avellana HOM05D002505 ORTHO05D007115 1.9e-118 429.9 359 61.3
Dinv25607 Davidia involucrata HOM05D002505 ORTHO05D007115 1.2e-117 427.2 357 62.2
Dinv11454 Davidia involucrata HOM05D002505 ORTHO05D007115 2.1e-117 426.4 357 61.9
FAN07G1120 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.0e-116 424.1 354 60.5
Lj2A158G82 Lonicera japonica HOM05D002505 ORTHO05D007115 1.4e-116 423.7 380 57.1
FAN17G1638 Fragaria x ananassa HOM05D002505 ORTHO05D007115 3.0e-116 422.5 354 60.5
Cfa011943 Carpinus fangiana HOM05D002505 ORTHO05D007115 4.0e-116 422.2 355 61.7
CSS0047752 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D007115 6.8e-116 421.4 352 61.6
CiPaw.11G114300 Carya illinoinensis HOM05D002505 ORTHO05D007115 6.8e-116 421.4 357 58.8
TPR.G36929 Trifolium pratense HOM05D002505 ORTHO05D007115 2.0e-115 419.9 353 58.6
CANSAT21G2418 Cannabis sativa HOM05D002505 ORTHO05D007115 3.4e-115 419.1 354 60.7
Ca_12555_v3 Cicer arietinum L. HOM05D002505 ORTHO05D007115 9.8e-115 417.5 351 57.8
Ca_12566_v3 Cicer arietinum L. HOM05D002505 ORTHO05D007115 9.8e-115 417.5 351 57.8
GSVIVG01019628001 Vitis vinifera HOM05D002505 ORTHO05D007115 9.8e-115 417.5 355 59.2
TWI60G0007 Tripterygium wilfordii HOM05D002505 ORTHO05D007115 2.2e-114 416.4 359 58.5
FAN22G1998 Fragaria x ananassa HOM05D002505 ORTHO05D007115 2.8e-114 416.0 353 59.8
vmacro11517 Vaccinium macrocarpon HOM05D002505 ORTHO05D007115 2.8e-114 416.0 418 52.9
Prupe.5G127300 Prunus persica HOM05D002505 ORTHO05D007115 8.3e-114 414.5 355 59.7
FvH4_4g16080 Fragaria vesca HOM05D002505 ORTHO05D007115 1.1e-113 414.1 353 59.8
FAN12G2820 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.1e-113 414.1 353 59.8
Gohir.A12G238900 Gossypium hirsutum HOM05D002505 ORTHO05D007115 1.8e-113 413.3 348 58.0
Thecc.03G223700 Theobroma cacao HOM05D002505 ORTHO05D007115 1.8e-113 413.3 357 59.4
TAR375G0040 Trochodendron aralioides HOM05D002505 ORTHO05D007115 2.4e-113 412.9 357 58.5
CAN.G567.73 Capsicum annuum HOM05D002505 ORTHO05D007115 3.1e-113 412.5 355 58.6
Gohir.D12G240000 Gossypium hirsutum HOM05D002505 ORTHO05D007115 4.1e-113 412.1 348 58.3
Nitab4.5_0002728g0050 Nicotiana tabacum HOM05D002505 ORTHO05D007115 1.6e-112 410.2 358 59.5
Dinv37391 Davidia involucrata HOM05D002505 ORTHO05D007115 2.0e-112 409.8 329 63.2
Sabra01G0062100 Salix brachista HOM05D002505 ORTHO05D007115 2.0e-112 409.8 355 60.0
PGR031G3103 Punica granatum HOM05D002505 ORTHO05D007115 2.7e-112 409.5 361 57.1
Sopen08g031180 Solanum pennellii HOM05D002505 ORTHO05D007115 4.5e-112 408.7 358 58.7
Duzib205G1766 Durio zibethinus HOM05D002505 ORTHO05D007115 5.9e-112 408.3 354 59.9
Solyc08g082960.3 Solanum lycopersicum HOM05D002505 ORTHO05D007115 5.9e-112 408.3 358 58.1
PGSC0003DMG400012246 Solanum tuberosum HOM05D002505 ORTHO05D007115 5.9e-112 408.3 353 59.8
Gorai.008G257100 Gossypium raimondii HOM05D002505 ORTHO05D007115 7.7e-112 407.9 348 57.8
Manes.02G004600 Manihot esculenta HOM05D002505 ORTHO05D007115 1.0e-111 407.5 352 61.1
arahy.Tifrunner.gnm1.ann1.31YZJ9 Arachis hypogaea HOM05D002505 ORTHO05D007115 1.7e-111 406.8 350 58.3
Peaxi162Scf00074g00358 Petunia axillaris HOM05D002505 ORTHO05D007115 2.3e-111 406.4 353 59.5
Psat6g045400 Pisum sativum HOM05D002505 ORTHO05D007115 2.3e-111 406.4 353 58.1
Aqoxy5G02423 Aquilegia oxysepala HOM05D002505 ORTHO05D007115 3.8e-111 405.6 359 57.9
arahy.Tifrunner.gnm1.ann1.Y3P1ER Arachis hypogaea HOM05D002505 ORTHO05D007115 1.5e-110 403.7 350 57.7
Lalb_Chr17g0338531 Lupinus albus HOM05D002505 ORTHO05D007115 1.5e-110 403.7 348 56.9
LjContig00141g0018407 Lotus japonicus HOM05D002505 ORTHO05D007115 2.5e-110 402.9 350 57.1
MD06G1114600 Malus domestica HOM05D002505 ORTHO05D007115 4.3e-110 402.1 354 58.2
RcHm_v2.0_Chr7g0186571 Rosa chinensis HOM05D002505 ORTHO05D007115 4.3e-110 402.1 354 57.9
SalBow6G5481 Salvia bowleyana HOM05D002505 ORTHO05D007115 7.3e-110 401.4 354 57.1
Aqoxy5G01632 Aquilegia oxysepala HOM05D002505 ORTHO05D007115 9.5e-110 401.0 359 57.9
Ciclev10020379m.g Citrus clementina HOM05D002505 ORTHO05D007115 1.2e-109 400.6 355 57.7
Medtr1g032200 Medicago truncatula HOM05D002505 ORTHO05D007115 3.6e-109 399.1 351 57.8
Nitab4.5_0005042g0030 Nicotiana tabacum HOM05D002505 ORTHO05D007115 3.6e-109 399.1 336 60.1
Cc00_g23270 Coffea canephora HOM05D002505 ORTHO05D007115 4.7e-109 398.7 357 57.4
Potri.003G145100 Populus trichocarpa HOM05D002505 ORTHO05D007115 8.0e-109 397.9 357 59.9
AUR62019897 Chenopodium quinoa HOM05D002505 ORTHO05D007115 1.4e-108 397.1 350 56.9
MSTRG.2011 Avicennia marina HOM05D002505 ORTHO05D007115 1.8e-108 396.7 353 57.5
Eucgr.D01694 Eucalyptus grandis HOM05D002505 ORTHO05D007115 1.8e-108 396.7 358 55.6
Oeu010746.1 Olea europaea HOM05D002505 ORTHO05D007115 2.3e-108 396.4 353 58.4
Migut.J00879 Erythranthe guttata HOM05D002505 ORTHO05D007115 3.0e-108 396.0 355 59.4
Medtr5g025880 Medicago truncatula HOM05D002505 ORTHO05D007115 3.0e-108 396.0 340 57.6
AUR62007033 Chenopodium quinoa HOM05D002505 ORTHO05D007115 4.0e-108 395.6 351 56.4
DCAR_009648 Daucus carota HOM05D002505 ORTHO05D007115 5.7e-107 391.7 357 55.7
Glyma.04G232000 Glycine max HOM05D002505 ORTHO05D007115 7.5e-107 391.3 350 56.6
Cpa.g.sc175.6 Carica papaya HOM05D002505 ORTHO05D007115 2.2e-106 389.8 359 56.0
EL10Ac5g12461 Beta vulgaris HOM05D002505 ORTHO05D007115 2.9e-106 389.4 351 56.1
Phvul.009G039500 Phaseolus vulgaris HOM05D002505 ORTHO05D007115 1.1e-105 387.5 350 55.7
VMungo1309G3079 Vigna mungo HOM05D002505 ORTHO05D007115 3.2e-105 386.0 350 56.0
Glyma.06G132900 Glycine max HOM05D002505 ORTHO05D007115 3.9e-103 379.0 352 55.1
Lalb_Chr10g0095811 Lupinus albus HOM05D002505 ORTHO05D007115 1.2e-101 374.0 351 54.7
Sed0001422 Sechium edule HOM05D002505 ORTHO05D007115 2.1e-101 373.2 357 56.0
Glyma.13G121900 Glycine max HOM05D002505 ORTHO05D007115 2.8e-101 372.9 351 54.7
SGA_v2.0_scaffold104G30125 Striga asiatica HOM05D002505 ORTHO05D007115 1.4e-100 370.5 350 52.6
Os10g0520700 Oryza sativa ssp. japonica HOM05D002505 ORTHO05D007115 3.1e-100 369.4 354 52.5
MBI04_g06931_MAGBIO Magnolia biondii HOM05D002505 ORTHO05D007115 8.9e-100 367.9 357 54.6
PSO339G4385 Papaver somniferum HOM05D002505 ORTHO05D007115 9.8e-99 364.4 359 52.9
Zm00001eb021220 Zea mays HOM05D002505 ORTHO05D007115 4.9e-98 362.1 355 50.7
Aa31LG1G18070 Aethionema arabicum HOM05D002505 ORTHO05D007115 8.3e-98 361.3 358 53.9
ClCG05G020760 Citrullus lanatus HOM05D002505 ORTHO05D007115 7.8e-96 354.8 356 52.2
MELO3C012450.2 Cucumis melo HOM05D002505 ORTHO05D007115 1.7e-95 353.6 356 52.2
CsaV3_5G036540 Cucumis sativus L. HOM05D002505 ORTHO05D007115 2.3e-95 353.2 354 51.7
FAN08G0319 Fragaria x ananassa HOM05D002505 ORTHO05D007115 3.0e-95 352.8 301 58.8
PSO384G5034 Papaver somniferum HOM05D002505 ORTHO05D007115 3.0e-95 352.8 359 53.2
ATR0757G152 Amborella trichopoda HOM05D002505 ORTHO05D007115 8.6e-95 351.3 356 52.8
THA.LOC104823623 Tarenaya hassleriana HOM05D002505 ORTHO05D007115 1.1e-94 350.9 353 50.4
unitig_22.g5105 Utricularia gibba HOM05D002505 ORTHO05D007115 3.3e-94 349.4 349 52.1
COL.COLO4_10772 Corchorus olitorius HOM05D002505 ORTHO05D007115 2.8e-93 346.3 295 60.0
PSO017G1033 Papaver somniferum HOM05D002505 ORTHO05D007115 6.2e-93 345.1 334 53.0
Carub.0008s2460 Capsella rubella HOM05D002505 ORTHO05D007115 8.1e-93 344.7 352 50.3
Sp2g26890 Schrenkiella parvula HOM05D002505 ORTHO05D007115 8.1e-93 344.7 354 50.8
A06p30440 Brassica napus HOM05D002505 ORTHO05D007115 4.0e-92 342.4 354 51.4
CARHR277730 Cardamine hirsuta HOM05D002505 ORTHO05D007115 3.4e-91 339.3 352 50.3
CDE11G0043 Ceratophyllum demersum HOM05D002505 ORTHO05D007115 7.5e-91 338.2 356 50.6
C03p62620 Brassica napus HOM05D002505 ORTHO05D007115 9.8e-91 337.8 353 50.4
BraA06t25993Z Brassica rapa HOM05D002505 ORTHO05D007115 9.8e-91 337.8 354 50.6
Nn4g26685 Nelumbo nucifera HOM05D002505 ORTHO05D007115 9.8e-91 337.8 284 59.9
BolC3t18519H Brassica oleracea HOM05D002505 ORTHO05D007115 4.9e-90 335.5 353 50.1
AT5G63830 Arabidopsis thaliana HOM05D002505 ORTHO05D007115 4.1e-89 332.4 353 49.6
AL8G41060 Arabidopsis lyrata HOM05D002505 ORTHO05D007115 5.4e-89 332.0 353 49.3
SEGI_04382 Sequoiadendron giganteum HOM05D002505 ORTHO05D007115 4.6e-88 328.9 378 46.0
Sc22g0004750 Simmondsia chinensis HOM05D002505 ORTHO05D007115 1.3e-87 327.4 265 61.5
BcaC01g02620 Brassica carinata HOM05D002505 ORTHO05D007115 2.3e-87 326.6 322 51.6
Thhalv10004334m.g Eutrema salsugineum HOM05D002505 ORTHO05D007115 6.2e-85 318.5 353 48.7
HPP92_022335 Vanilla planifolia HOM05D002505 ORTHO05D007115 6.2e-85 318.5 403 44.4
HPP92_022360 Vanilla planifolia HOM05D002505 ORTHO05D007115 1.2e-83 314.3 416 42.8
Hma1.2p1_0456F.1_g156510 Hydrangea macrophylla HOM05D002505 ORTHO05D007115 4.3e-78 295.8 216 65.3
vmacro04587 Vaccinium macrocarpon HOM05D002505 ORTHO05D007115 2.9e-74 283.1 355 45.9
SMO348G0019 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 6.0e-72 275.4 325 45.5
RhsimUnG0115700 Rhododendron simsii HOM05D002505 ORTHO05D007115 1.4e-65 254.2 276 50.0
FAN13G3213 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.2e-64 251.1 189 63.5
Pp3c16_17440 Physcomitrium patens HOM05D002505 ORTHO05D007115 1.2e-64 251.1 382 36.6
AagrBONN_evm.TU.Sc2ySwM_368.1194 Anthoceros agrestis HOM05D002505 ORTHO05D007115 2.7e-64 250.0 301 45.8
RcHm_v2.0_Chr7g0184121 Rosa chinensis HOM05D002505 ORTHO05D007115 2.3e-63 246.9 198 60.1
Potri.001G085800 Populus trichocarpa HOM05D002505 ORTHO05D007115 7.4e-62 241.9 184 62.5
Mapoly0049s0078 Marchantia polymorpha HOM05D002505 ORTHO05D007115 1.4e-60 237.7 420 34.0
SEGI_16855 Sequoiadendron giganteum HOM05D002505 ORTHO05D007115 6.7e-55 218.8 258 45.3
Medtr1g090530 Medicago truncatula HOM05D002505 ORTHO05D007115 3.3e-46 189.9 222 46.8
Atru.chr5.483 Acer truncatum HOM05D002505 ORTHO05D007115 4.6e-40 169.5 129 59.7
CBR_g20449 Chara braunii HOM05D002505 ORTHO05D007115 6.3e-37 159.1 317 32.5
SMO285G0002 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 2.4e-36 157.1 332 32.2
FAN05G1175 Fragaria x ananassa HOM05D002505 ORTHO05D007115 2.2e-34 150.6 108 64.8
Actinidia04163 Actinidia chinensis HOM05D002436 ORTHO05D002754 2.1e-32 144.1 165 46.7
FvH4_5g11280 Fragaria vesca HOM05D002505 ORTHO05D007115 7.9e-32 142.1 260 34.6
MCO07G240 Micromonas commoda HOM05D002505 ORTHO05D007115 1.5e-30 137.9 285 32.3
FAN14G3314 Fragaria x ananassa HOM05D002505 ORTHO05D007115 8.2e-29 132.1 152 46.7
Atru.chr5.482 Acer truncatum HOM05D002505 ORTHO05D007115 2.2e-26 124.0 99 62.6
RcHm_v2.0_Chr7g0184131 Rosa chinensis HOM05D002505 ORTHO05D007115 1.0e-18 98.6 69 62.3
Oeu004999.3 Olea europaea HOM05D002505 ORTHO05D007115 1.5e-17 94.7 117 46.2
HanXRQChr03g0061211 Helianthus annuus HOM05D002505 ORTHO05D007115 9.7e-14 82.0 81 51.9
Zm00001eb044440 Zea mays HOM05D002505 ORTHO05D007115 1.8e-12 77.8 99 46.5
Rhsim10G0016900 Rhododendron simsii HOM05D000068 ORTHO05D004691 7.0e-12 75.9 77 50.6
Cre08.g379050 Chlamydomonas reinhardtii HOM05D002505 ORTHO05D007115 3.8e-10 70.1 411 20.9
BraA06t26113Z Brassica rapa HOM05D005837 ORTHO05D007594 5.0e-10 69.7 104 39.4
FvH4_3g32050 Fragaria vesca HOM05D002505 ORTHO05D045879 6.5e-10 69.3 49 61.2
SMO348G0061 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 4.0e-07 60.1 158 27.8


User provided reference genes

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