Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA240G2123 Erigeron canadensis HOM05D004118 ORTHO05D004686 0.0e+00 1179.5 649 100.0
HanXRQChr03g0070941 Helianthus annuus HOM05D004118 ORTHO05D004686 9.8e-169 597.8 682 56.9
Lsat_1_v5_gn_9_98421 Lactuca sativa HOM05D004118 ORTHO05D004686 2.8e-163 579.7 690 55.4
Lsat_1_v5_gn_5_128820 Lactuca sativa HOM05D004118 ORTHO05D004686 1.4e-111 407.9 679 43.4
Nitab4.5_0011677g0020 Nicotiana tabacum HOM05D004118 ORTHO05D004686 8.8e-109 398.7 763 41.3
Nitab4.5_0000246g0070 Nicotiana tabacum HOM05D004118 ORTHO05D004686 2.6e-108 397.1 770 42.1
Solyc07g062730.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 2.4e-106 390.6 747 40.8
Sopen07g030960 Solanum pennellii HOM05D004118 ORTHO05D004686 3.1e-106 390.2 745 40.9
ECA236G3195 Erigeron canadensis HOM05D004118 ORTHO05D004686 1.2e-102 378.3 703 41.3
ECA234G1224 Erigeron canadensis HOM05D004118 ORTHO05D004686 7.4e-100 369.0 692 41.5
PGSC0003DMG400012399 Solanum tuberosum HOM05D004118 ORTHO05D004686 7.4e-100 369.0 763 40.5
CAN.G162.27 Capsicum annuum HOM05D004118 ORTHO05D004686 3.8e-96 356.7 708 41.4
Lsat_1_v5_gn_7_103661 Lactuca sativa HOM05D004118 ORTHO05D004686 3.2e-95 353.6 674 40.9
QL08p023555 Quercus lobata HOM05D004118 ORTHO05D004686 2.0e-92 344.4 788 37.8
DCAR_021002 Daucus carota HOM05D004118 ORTHO05D004686 9.7e-92 342.0 795 36.9
HanXRQChr10g0302481 Helianthus annuus HOM05D004118 ORTHO05D004686 1.7e-91 341.3 725 37.5
Cc05_g11580 Coffea canephora HOM05D004118 ORTHO05D004686 6.3e-91 339.3 862 35.6
FvH4_3g19150 Fragaria vesca HOM05D004118 ORTHO05D004686 1.8e-90 337.8 758 37.1
PGSC0003DMG400015371 Solanum tuberosum HOM05D004118 ORTHO05D004686 2.4e-90 337.4 678 40.0
MSTRG.6813 Avicennia marina HOM05D004118 ORTHO05D004686 5.3e-90 336.3 789 38.0
FAN11G3070 Fragaria x ananassa HOM05D004118 ORTHO05D004686 1.6e-89 334.7 755 37.4
FAN16G2866 Fragaria x ananassa HOM05D004118 ORTHO05D004686 1.3e-88 331.6 754 36.6
Manes.15G090200 Manihot esculenta HOM05D004118 ORTHO05D004686 5.0e-88 329.7 778 36.9
SGA_v2.0_scaffold73G24222 Striga asiatica HOM05D004118 ORTHO05D004686 6.5e-88 329.3 789 36.8
Prupe.4G173200 Prunus persica HOM05D004118 ORTHO05D004686 1.1e-87 328.6 794 35.3
Peaxi162Scf00069g00197 Petunia axillaris HOM05D004118 ORTHO05D004686 4.2e-87 326.6 733 40.1
CSS0010936 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 9.4e-87 325.5 780 36.9
FAN25G0990 Fragaria x ananassa HOM05D004118 ORTHO05D004686 9.4e-87 325.5 759 37.8
SalBow8G5405 Salvia bowleyana HOM05D004118 ORTHO05D004686 1.2e-86 325.1 713 38.3
Lj8C153G19 Lonicera japonica HOM05D004118 ORTHO05D004686 1.6e-86 324.7 672 39.7
CiPaw.11G166400 Carya illinoinensis HOM05D004118 ORTHO05D004686 3.6e-86 323.6 793 36.6
RcHm_v2.0_Chr5g0032241 Rosa chinensis HOM05D004118 ORTHO05D004686 1.8e-85 321.2 766 35.8
FAN21G0508 Fragaria x ananassa HOM05D004118 ORTHO05D004686 2.3e-85 320.9 757 35.7
VMungo1080G0043 Vigna mungo HOM05D004118 ORTHO05D004686 2.3e-85 320.9 772 39.2
Sabra11G0091500 Salix brachista HOM05D004118 ORTHO05D004686 2.0e-84 317.8 756 37.0
MD03G1236100 Malus domestica HOM05D004118 ORTHO05D004686 2.6e-84 317.4 768 36.8
Sabra11G0090500 Salix brachista HOM05D004118 ORTHO05D004686 2.6e-84 317.4 757 37.6
Sopen12g005780 Solanum pennellii HOM05D004118 ORTHO05D004686 2.6e-84 317.4 683 37.6
MD11G1256900 Malus domestica HOM05D004118 ORTHO05D004686 3.4e-84 317.0 775 36.4
TWI39G0897 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 2.8e-83 313.9 793 36.8
Medtr2g078530 Medicago truncatula HOM05D004118 ORTHO05D004686 3.7e-83 313.5 758 38.8
Potri.011G097700 Populus trichocarpa HOM05D004118 ORTHO05D004686 4.1e-82 310.1 791 35.8
Duzib213G0890 Durio zibethinus HOM05D004118 ORTHO05D004686 5.4e-82 309.7 774 36.4
Manes.03G104700 Manihot esculenta HOM05D004118 ORTHO05D004686 7.0e-82 309.3 734 37.3
Nitab4.5_0003033g0050 Nicotiana tabacum HOM05D004118 ORTHO05D004686 1.2e-81 308.5 760 36.4
Glyma.13G273000 Glycine max HOM05D004118 ORTHO05D004686 1.6e-81 308.1 778 38.2
TAR627G0391 Trochodendron aralioides HOM05D004118 ORTHO05D004686 3.5e-81 307.0 775 35.4
Cpa.g.sc80.12 Carica papaya HOM05D004118 ORTHO05D004686 7.7e-81 305.8 824 35.9
Peaxi162Scf00000g00285 Petunia axillaris HOM05D004118 ORTHO05D004686 1.0e-80 305.4 738 37.1
MSTRG.15246 Avicennia marina HOM05D004118 ORTHO05D004686 1.7e-80 304.7 707 36.9
Thecc.07G100000 Theobroma cacao HOM05D004118 ORTHO05D004686 2.2e-80 304.3 768 36.1
PGR083G2344 Punica granatum HOM05D004118 ORTHO05D004686 2.9e-80 303.9 745 36.8
Oeu019296.1 Olea europaea HOM05D004118 ORTHO05D004686 3.8e-80 303.5 706 37.0
Migut.M00768 Erythranthe guttata HOM05D004118 ORTHO05D004686 8.5e-80 302.4 819 35.0
Sc16g0007320 Simmondsia chinensis HOM05D004118 ORTHO05D004686 1.5e-79 301.6 794 37.7
Cfa020624 Carpinus fangiana HOM05D004118 ORTHO05D004686 1.9e-79 301.2 790 35.9
CiPaw.12G116800 Carya illinoinensis HOM05D004118 ORTHO05D004686 1.9e-79 301.2 776 33.9
Gohir.D13G152264 Gossypium hirsutum HOM05D004118 ORTHO05D004686 2.1e-78 297.7 747 36.4
Eucgr.F01179 Eucalyptus grandis HOM05D004118 ORTHO05D004686 2.7e-78 297.4 802 35.0
Potri.001G373100 Populus trichocarpa HOM05D004118 ORTHO05D004686 1.0e-77 295.4 769 34.3
Gohir.A13G147400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.8e-77 294.7 759 35.7
Phvul.005G069300 Phaseolus vulgaris HOM05D004118 ORTHO05D004686 3.0e-77 293.9 774 36.7
Nn1g04275 Nelumbo nucifera HOM05D004118 ORTHO05D004686 4.4e-76 290.0 774 35.4
Haze_09381 Corylus avellana HOM05D004118 ORTHO05D004686 9.8e-76 288.9 770 35.5
Nitab4.5_0000332g0190 Nicotiana tabacum HOM05D004118 ORTHO05D004686 9.8e-76 288.9 756 35.8
Actinidia35234 Actinidia chinensis HOM05D004118 ORTHO05D001556 2.8e-75 287.3 710 37.2
MSTRG.12889 Avicennia marina HOM05D004118 ORTHO05D004686 8.3e-75 285.8 722 37.4
Sed0017211 Sechium edule HOM05D004118 ORTHO05D004686 8.3e-75 285.8 776 35.2
Psat5g241400 Pisum sativum HOM05D004118 ORTHO05D004686 2.4e-74 284.3 766 36.4
Sabra16G0245500 Salix brachista HOM05D004118 ORTHO05D004686 7.0e-74 282.7 732 35.1
Gorai.013G171900 Gossypium raimondii HOM05D004118 ORTHO05D004686 9.2e-74 282.3 757 35.0
Lalb_Chr20g0109451 Lupinus albus HOM05D004118 ORTHO05D004686 2.0e-73 281.2 737 37.3
Oeu025351.1 Olea europaea HOM05D004118 ORTHO05D004686 2.0e-73 281.2 688 36.2
Glyma.12G227300 Glycine max HOM05D004118 ORTHO05D004686 2.7e-73 280.8 765 39.0
CSS0009782 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 1.3e-72 278.5 706 35.6
Aqoxy1G02262 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 3.8e-72 276.9 752 36.0
Rhsim04G0023200 Rhododendron simsii HOM05D004118 ORTHO05D004686 3.8e-72 276.9 734 36.0
Ciclev10007570m.g Citrus clementina HOM05D004118 ORTHO05D004686 5.0e-72 276.6 780 35.1
THA.LOC104810455 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 5.0e-72 276.6 702 36.3
Actinidia07500 Actinidia chinensis HOM05D004118 ORTHO05D004686 2.5e-71 274.2 723 35.1
CsaV3_3G019580 Cucumis sativus L. HOM05D004118 ORTHO05D004686 1.2e-70 271.9 810 32.8
Dinv20215 Davidia involucrata HOM05D004118 ORTHO05D004686 1.6e-70 271.6 719 34.6
Ah.06g194460 Amaranthus hybridus HOM05D004118 ORTHO05D004686 2.1e-70 271.2 693 35.8
DCAR_019575 Daucus carota HOM05D004118 ORTHO05D004686 3.6e-70 270.4 663 36.3
Sp3g13300 Schrenkiella parvula HOM05D004118 ORTHO05D004686 1.0e-69 268.9 716 34.8
TWI38G2280 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 1.8e-69 268.1 729 34.7
Thhalv10020211m.g Eutrema salsugineum HOM05D004118 ORTHO05D004686 2.6e-68 264.2 713 34.4
vmacro11898 Vaccinium macrocarpon HOM05D004118 ORTHO05D004686 9.8e-68 262.3 750 35.5
CANSAT35G0858 Cannabis sativa HOM05D004118 ORTHO05D004686 2.2e-67 261.2 755 33.9
EL10Ac4g08266 Beta vulgaris HOM05D004118 ORTHO05D004686 4.9e-67 260.0 805 33.4
unitig_37.g12565 Utricularia gibba HOM05D004118 ORTHO05D004686 2.7e-65 254.2 620 36.5
MELO3C019394.2 Cucumis melo HOM05D004118 ORTHO05D004686 4.6e-65 253.4 805 32.2
Sed0016267 Sechium edule HOM05D004118 ORTHO05D004686 7.8e-65 252.7 682 34.0
Aa31LG8G2310 Aethionema arabicum HOM05D004118 ORTHO05D004686 1.7e-64 251.5 702 35.5
Gohir.D01G046700 Gossypium hirsutum HOM05D004118 ORTHO05D004686 2.3e-64 251.1 672 36.6
CSS0030924 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 8.6e-64 249.2 645 36.6
PSO675G0887 Papaver somniferum HOM05D004118 ORTHO05D004686 1.1e-63 248.8 786 33.8
Dinv14950 Davidia involucrata HOM05D004118 ORTHO05D004686 1.9e-63 248.1 628 36.6
Duzib170G0047 Durio zibethinus HOM05D004118 ORTHO05D004686 1.9e-63 248.1 700 34.0
arahy.Tifrunner.gnm1.ann1.YMW7LF Arachis hypogaea HOM05D004118 ORTHO05D004686 3.3e-63 247.3 647 35.5
Lj3g0023579 Lotus japonicus HOM05D004118 ORTHO05D004686 5.6e-63 246.5 762 34.3
Lalb_Chr25g0286181 Lupinus albus HOM05D004118 ORTHO05D004686 3.4e-60 237.3 723 34.0
TPR.G17554 Trifolium pratense HOM05D004118 ORTHO05D004686 3.4e-60 237.3 777 35.3
PSO478G3864 Papaver somniferum HOM05D004118 ORTHO05D004686 1.7e-59 235.0 775 31.1
Rhsim06G0203400 Rhododendron simsii HOM05D004118 ORTHO05D004686 3.7e-59 233.8 737 33.1
HanXRQChr15g0494281 Helianthus annuus HOM05D004118 ORTHO05D004686 1.1e-58 232.3 830 31.3
unitig_747.g21581 Utricularia gibba HOM05D004118 ORTHO05D004686 1.1e-58 232.3 789 31.2
AUR62036141 Chenopodium quinoa HOM05D004118 ORTHO05D004686 3.2e-58 230.7 752 31.9
Gorai.002G066200 Gossypium raimondii HOM05D004118 ORTHO05D004686 7.8e-57 226.1 585 35.9
PSO017G1325 Papaver somniferum HOM05D004118 ORTHO05D004686 6.6e-56 223.0 810 31.0
Lalb_Chr01g0006651 Lupinus albus HOM05D004118 ORTHO05D004686 1.5e-55 221.9 645 33.6
PSO541G0755 Papaver somniferum HOM05D004118 ORTHO05D004686 1.5e-55 221.9 775 31.7
AL3G27450 Arabidopsis lyrata HOM05D004118 ORTHO05D004686 6.8e-53 213.0 712 34.1
Hma1.2p1_0313F.1_g121640 Hydrangea macrophylla HOM05D004118 ORTHO05D004686 6.8e-53 213.0 615 32.8
MBI07_g32544_MAGBIO Magnolia biondii HOM05D004118 ORTHO05D004686 1.2e-52 212.2 807 30.5
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 3.4e-52 210.7 760 30.3
BcaB04g20948 Brassica carinata HOM05D004118 ORTHO05D004686 3.7e-51 207.2 627 33.3
arahy.Tifrunner.gnm1.ann1.82B0EJ Arachis hypogaea HOM05D004118 ORTHO05D004686 1.1e-50 205.7 484 36.6
DCAR_017117 Daucus carota HOM05D004118 ORTHO05D004686 3.2e-50 204.1 674 33.2
Gohir.A08G021600 Gossypium hirsutum HOM05D004118 ORTHO05D004686 9.2e-50 202.6 623 34.0
Ah.04g162010 Amaranthus hybridus HOM05D004118 ORTHO05D004686 1.2e-49 202.2 752 33.0
CARHR090060 Cardamine hirsuta HOM05D004118 ORTHO05D004686 1.6e-49 201.8 703 31.6
Aqoxy4G00578 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 1.3e-48 198.7 773 28.8
Gohir.D08G032400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 3.6e-46 190.7 625 33.1
SGA_v2.0_scaffold70G23697 Striga asiatica HOM05D004118 ORTHO05D004686 2.3e-45 188.0 653 33.8
Gorai.004G029800 Gossypium raimondii HOM05D004118 ORTHO05D004686 4.0e-45 187.2 625 33.0
Lalb_Chr03g0030811 Lupinus albus HOM05D004118 ORTHO05D004686 6.0e-41 173.3 633 29.1
C05p52120 Brassica napus HOM05D004118 ORTHO05D004686 1.1e-39 169.1 672 30.7
BolC5t33897H Brassica oleracea HOM05D004118 ORTHO05D004686 1.1e-39 169.1 672 30.7
SGA_v2.0_scaffold130G34343 Striga asiatica HOM05D004118 ORTHO05D004686 5.6e-39 166.8 637 31.1
A05p34340 Brassica napus HOM05D004118 ORTHO05D004686 6.2e-38 163.3 689 29.0
Lalb_Chr19g0134031 Lupinus albus HOM05D004118 ORTHO05D004686 6.2e-38 163.3 600 31.7
BcaB06g29535 Brassica carinata HOM05D004118 ORTHO05D004686 8.1e-38 162.9 678 29.8
C01p49420 Brassica napus HOM05D004118 ORTHO05D004686 8.1e-38 162.9 597 32.0
BolC1t04899H Brassica oleracea HOM05D004118 ORTHO05D004686 8.1e-38 162.9 596 31.5
BcaC09g48474 Brassica carinata HOM05D004118 ORTHO05D004686 1.1e-37 162.5 595 31.4
BraA05t22255Z Brassica rapa HOM05D004118 ORTHO05D004686 1.2e-36 159.1 682 28.7
HanXRQChr12g0372791 Helianthus annuus HOM05D004118 ORTHO05D004686 1.7e-35 155.2 183 53.6
GSVIVG01014262001 Vitis vinifera HOM05D004118 ORTHO05D003395 4.9e-35 153.7 528 31.4
Lsat_1_v5_gn_4_172920 Lactuca sativa HOM05D004118 ORTHO05D004686 1.1e-34 152.5 229 46.3
SEGI_08873 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 3.2e-34 151.0 678 29.2
Solyc12g014040.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 9.3e-34 149.4 242 40.1
HPP92_002942 Vanilla planifolia HOM05D004118 ORTHO05D004686 1.7e-32 145.2 779 29.1
THA.LOC104798758 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 1.5e-31 142.1 493 29.6
HPP92_003871 Vanilla planifolia HOM05D004118 ORTHO05D004686 2.8e-30 137.9 761 27.5
Zm00001eb395950 Zea mays HOM05D004118 ORTHO05D004686 1.8e-29 135.2 865 25.8
Gohir.A01G060200 Gossypium hirsutum HOM05D004118 ORTHO05D004686 2.4e-29 134.8 449 35.2
AT3G15095 Arabidopsis thaliana HOM05D004118 ORTHO05D004686 2.0e-28 131.7 406 30.8
PSO675G3813 Papaver somniferum HOM05D004118 ORTHO05D004686 2.6e-28 131.3 371 33.4
Zm00001eb014970 Zea mays HOM05D004118 ORTHO05D004686 1.3e-27 129.0 880 28.5
Lsat_1_v5_gn_1_36460 Lactuca sativa HOM05D004118 ORTHO05D004686 2.2e-27 128.3 274 38.0
Nn1g06377 Nelumbo nucifera HOM05D004118 ORTHO05D004686 3.8e-27 127.5 271 37.6
CAN.G329.5 Capsicum annuum HOM05D004118 ORTHO05D004686 2.1e-25 121.7 359 32.9
Actinidia14383 Actinidia chinensis HOM05D004118 ORTHO05D004686 7.9e-25 119.8 316 35.8
Atru.chr2.2380 Acer truncatum HOM05D004118 ORTHO05D004686 1.3e-24 119.0 186 39.8
AUR62019494 Chenopodium quinoa HOM05D004118 ORTHO05D004686 1.1e-23 115.9 508 29.1
Cc04_g12070 Coffea canephora HOM05D004118 ORTHO05D004686 1.1e-21 109.4 143 48.3
Os06g0352900 Oryza sativa ssp. japonica HOM05D004118 ORTHO05D004686 3.4e-20 104.4 877 25.4
Atru.chr2.2381 Acer truncatum HOM05D004118 ORTHO05D004686 7.6e-20 103.2 161 47.2
HPP92_003896 Vanilla planifolia HOM05D004118 ORTHO05D004686 9.3e-18 96.3 190 38.4
Lj1P837T15 Lonicera japonica HOM05D004118 ORTHO05D004686 1.6e-17 95.5 105 58.1
HPP92_003895 Vanilla planifolia HOM05D004118 ORTHO05D004686 3.0e-16 91.3 484 27.5
CDE10G0292 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 8.7e-16 89.7 629 25.6
Actinidia33372 Actinidia chinensis HOM05D004118 ORTHO05D004686 1.4e-13 82.4 120 49.2
SEGI_02629 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 3.1e-13 81.3 661 24.8
Cfa006262 Carpinus fangiana HOM05D000001 ORTHO05D000003 2.0e-12 78.6 111 38.7
Lsat_1_v5_gn_5_162921 Lactuca sativa HOM05D004118 ORTHO05D004686 1.7e-11 75.5 72 61.1
CDE10G0599 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 7.1e-10 70.1 277 26.0
TPR.G17527 Trifolium pratense HOM05D004118 ORTHO05D004686 1.5e-07 62.4 51 70.6


User provided reference genes

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