Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA240G2096 Erigeron canadensis HOM05D003942 ORTHO05D004527 1.4e-193 679.5 345 100.0
HanXRQChr13g0426521 Helianthus annuus HOM05D003942 ORTHO05D004527 8.9e-161 570.5 341 84.5
Lsat_1_v5_gn_3_137060 Lactuca sativa HOM05D003942 ORTHO05D004527 5.8e-160 567.8 345 84.6
HanXRQChr16g0522811 Helianthus annuus HOM05D003942 ORTHO05D004527 9.0e-145 517.3 340 77.6
Lsat_1_v5_gn_4_36221 Lactuca sativa HOM05D003942 ORTHO05D004527 1.5e-144 516.5 346 77.5
Dinv32469 Davidia involucrata HOM05D003942 ORTHO05D004527 1.1e-139 500.4 332 76.2
CSS0049620 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 4.8e-138 495.0 332 75.9
Gorai.007G098800 Gossypium raimondii HOM05D003942 ORTHO05D004527 1.4e-137 493.4 333 75.7
TAR629G1832 Trochodendron aralioides HOM05D003942 ORTHO05D004527 1.4e-137 493.4 332 75.0
CSS0041241 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 1.8e-137 493.0 332 75.6
Gohir.A11G088200 Gossypium hirsutum HOM05D003942 ORTHO05D004527 1.8e-137 493.0 333 75.7
Rhsim07G0016400 Rhododendron simsii HOM05D003942 ORTHO05D004527 6.9e-137 491.1 332 73.8
GSVIVG01026895001 Vitis vinifera HOM05D003942 ORTHO05D004527 1.2e-136 490.3 332 74.4
Thecc.01G360500 Theobroma cacao HOM05D003942 ORTHO05D004527 1.5e-136 490.0 332 75.3
Actinidia10022 Actinidia chinensis HOM05D003942 ORTHO05D004527 3.4e-136 488.8 332 74.4
Peaxi162Scf00191g01422 Petunia axillaris HOM05D003942 ORTHO05D004527 2.2e-135 486.1 332 74.4
COL.COLO4_12700 Corchorus olitorius HOM05D003942 ORTHO05D004527 1.1e-134 483.8 333 74.2
Nitab4.5_0008050g0040 Nicotiana tabacum HOM05D003942 ORTHO05D004527 1.1e-134 483.8 331 75.2
Duzib133G0298 Durio zibethinus HOM05D003942 ORTHO05D004527 4.2e-134 481.9 332 73.5
Solyc05g049900.3 Solanum lycopersicum HOM05D003942 ORTHO05D004527 1.6e-133 479.9 331 73.1
Sopen05g028240 Solanum pennellii HOM05D003942 ORTHO05D004527 1.6e-133 479.9 331 73.1
PGSC0003DMG400021644 Solanum tuberosum HOM05D003942 ORTHO05D004527 2.7e-133 479.2 331 73.4
DCAR_015969 Daucus carota HOM05D003942 ORTHO05D004527 3.5e-133 478.8 332 72.9
TAR375G0209 Trochodendron aralioides HOM05D003942 ORTHO05D004527 6.0e-133 478.0 332 73.2
Cpa.g.sc18.243 Carica papaya HOM05D003942 ORTHO05D004527 1.3e-132 476.9 332 73.2
Nitab4.5_0001702g0090 Nicotiana tabacum HOM05D003942 ORTHO05D004527 1.3e-132 476.9 331 74.0
CAN.G399.13 Capsicum annuum HOM05D003942 ORTHO05D004527 1.8e-132 476.5 332 72.6
Manes.05G036000 Manihot esculenta HOM05D003942 ORTHO05D004527 2.5e-131 472.6 332 73.2
PGR042G2566 Punica granatum HOM05D003942 ORTHO05D004527 2.5e-131 472.6 330 72.4
TWI59G0555 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 2.5e-131 472.6 332 72.3
CANSAT56G2580 Cannabis sativa HOM05D003942 ORTHO05D004527 4.3e-131 471.9 330 73.0
MBI18_g25515_MAGBIO Magnolia biondii HOM05D003942 ORTHO05D004527 5.7e-131 471.5 333 71.2
TWI23G1005 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 5.7e-131 471.5 332 72.6
Lalb_Chr04g0256871 Lupinus albus HOM05D003942 ORTHO05D004527 7.4e-131 471.1 332 69.6
VMungo0331G0006 Vigna mungo HOM05D003942 ORTHO05D004527 9.6e-131 470.7 334 69.8
Potri.014G082900 Populus trichocarpa HOM05D003942 ORTHO05D004527 1.6e-130 469.9 331 71.6
Migut.N01440 Erythranthe guttata HOM05D003942 ORTHO05D004527 6.3e-130 468.0 339 69.6
Sabra14G0060100 Salix brachista HOM05D003942 ORTHO05D004527 6.3e-130 468.0 331 71.6
Glyma.03G010800 Glycine max HOM05D003942 ORTHO05D004527 8.2e-130 467.6 336 69.0
THA.LOC104817290 Tarenaya hassleriana HOM05D003942 ORTHO05D004527 1.8e-129 466.5 329 72.6
SalBow5G2271 Salvia bowleyana HOM05D003942 ORTHO05D004527 2.4e-129 466.1 333 71.2
MD07G1139000 Malus domestica HOM05D003942 ORTHO05D004527 3.1e-129 465.7 330 71.5
QL08p049021 Quercus lobata HOM05D003942 ORTHO05D004527 5.3e-129 464.9 332 70.2
Glyma.07G071900 Glycine max HOM05D003942 ORTHO05D004527 9.0e-129 464.2 334 69.5
Medtr8g031000 Medicago truncatula HOM05D003942 ORTHO05D004527 9.0e-129 464.2 334 68.3
TPR.G15979 Trifolium pratense HOM05D003942 ORTHO05D004527 1.2e-128 463.8 330 69.4
MD01G1057600 Malus domestica HOM05D003942 ORTHO05D004527 1.5e-128 463.4 330 71.5
Oeu020562.1 Olea europaea HOM05D003942 ORTHO05D004527 1.5e-128 463.4 331 71.0
CDE09G0298 Ceratophyllum demersum HOM05D003942 ORTHO05D004527 2.0e-128 463.0 346 67.3
Atru.chr5.464 Acer truncatum HOM05D003942 ORTHO05D004527 2.6e-128 462.6 335 69.9
Aqoxy5G04009 Aquilegia oxysepala HOM05D003942 ORTHO05D004527 4.5e-128 461.8 335 69.3
Eucgr.E00157 Eucalyptus grandis HOM05D003942 ORTHO05D004527 4.5e-128 461.8 330 69.4
Cc02_g37870 Coffea canephora HOM05D003942 ORTHO05D004527 5.9e-128 461.5 331 69.2
CiPaw.01G059900 Carya illinoinensis HOM05D003942 ORTHO05D004527 1.0e-127 460.7 333 70.9
FAN10G4090 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.0e-127 460.7 331 69.8
Psat4g154400 Pisum sativum HOM05D003942 ORTHO05D004527 1.0e-127 460.7 334 68.3
Lj9A582T85 Lonicera japonica HOM05D003942 ORTHO05D004527 1.3e-127 460.3 401 62.8
Cfa003938 Carpinus fangiana HOM05D003942 ORTHO05D004527 1.7e-127 459.9 333 70.3
CiPaw.02G030000 Carya illinoinensis HOM05D003942 ORTHO05D004527 3.8e-127 458.8 333 70.9
Ciclev10020374m.g Citrus clementina HOM05D003942 ORTHO05D004527 5.0e-127 458.4 332 70.2
Lj3g0006137 Lotus japonicus HOM05D003942 ORTHO05D004527 5.0e-127 458.4 332 68.4
Phvul.010G097300 Phaseolus vulgaris HOM05D003942 ORTHO05D004527 1.1e-126 457.2 334 67.4
FvH4_7g14170 Fragaria vesca HOM05D003942 ORTHO05D004527 1.4e-126 456.8 331 69.5
FAN01G0250 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.4e-126 456.8 331 69.5
Hund27285 Selenicereus undatus HOM05D003942 ORTHO05D004527 1.9e-126 456.4 337 68.2
FAN06G2309 Fragaria x ananassa HOM05D003942 ORTHO05D004527 3.2e-126 455.7 331 69.2
Prupe.2G168100 Prunus persica HOM05D003942 ORTHO05D004527 3.2e-126 455.7 331 69.5
Ca_23643_v3 Cicer arietinum L. HOM05D003942 ORTHO05D004527 4.2e-126 455.3 334 66.5
RcHm_v2.0_Chr1g0355071 Rosa chinensis HOM05D003942 ORTHO05D004527 4.2e-126 455.3 332 69.3
MSTRG.4859 Avicennia marina HOM05D003942 ORTHO05D004527 5.5e-126 454.9 332 69.0
AUR62004344 Chenopodium quinoa HOM05D003942 ORTHO05D004527 7.2e-126 454.5 332 67.8
AUR62022550 Chenopodium quinoa HOM05D003942 ORTHO05D004527 7.2e-126 454.5 332 67.8
FAN06G3470 Fragaria x ananassa HOM05D003942 ORTHO05D004527 2.7e-125 452.6 331 69.2
Lalb_Chr03g0038211 Lupinus albus HOM05D003942 ORTHO05D004527 2.7e-125 452.6 330 68.2
ECA234G1137 Erigeron canadensis HOM05D003942 ORTHO05D004527 4.6e-125 451.8 299 78.3
SGA_v2.0_scaffold43G16422 Striga asiatica HOM05D003942 ORTHO05D004527 4.6e-125 451.8 341 67.4
FAN03G2475 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.8e-124 449.9 331 68.6
Aa31LG10G15570 Aethionema arabicum HOM05D003942 ORTHO05D004527 1.1e-123 447.2 329 68.7
Ah.05g180690 Amaranthus hybridus HOM05D003942 ORTHO05D004527 1.1e-123 447.2 335 65.1
A04p01160 Brassica napus HOM05D003942 ORTHO05D004527 1.9e-123 446.4 333 67.9
C04p71910 Brassica napus HOM05D003942 ORTHO05D004527 1.9e-123 446.4 331 68.6
BraA04t15833Z Brassica rapa HOM05D003942 ORTHO05D004527 1.9e-123 446.4 333 67.9
BcaC07g40631 Brassica carinata HOM05D003942 ORTHO05D004527 3.3e-123 445.7 333 67.9
BraA04t18872Z Brassica rapa HOM05D003942 ORTHO05D004527 3.3e-123 445.7 331 68.3
C04p31390 Brassica napus HOM05D003942 ORTHO05D004527 4.3e-123 445.3 329 68.1
AL5G43590 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 5.7e-123 444.9 333 68.2
Carub.0005s2799 Capsella rubella HOM05D003942 ORTHO05D004527 5.7e-123 444.9 329 69.0
BolC4t24688H Brassica oleracea HOM05D003942 ORTHO05D004527 9.7e-123 444.1 329 68.1
BolC4t28689H Brassica oleracea HOM05D003942 ORTHO05D004527 1.3e-122 443.7 331 68.0
Sp5g02060 Schrenkiella parvula HOM05D003942 ORTHO05D004527 1.3e-122 443.7 331 68.3
arahy.Tifrunner.gnm1.ann1.2H0UDK Arachis hypogaea HOM05D003942 ORTHO05D004527 1.6e-122 443.4 354 64.7
arahy.Tifrunner.gnm1.ann1.Q5YAPI Arachis hypogaea HOM05D003942 ORTHO05D004527 4.8e-122 441.8 354 64.7
A09p53400 Brassica napus HOM05D003942 ORTHO05D004527 8.2e-122 441.0 333 66.7
BcaC02g07065 Brassica carinata HOM05D003942 ORTHO05D004527 1.1e-121 440.7 331 68.3
AL4G45080 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 1.4e-121 440.3 329 68.7
A04p34110 Brassica napus HOM05D003942 ORTHO05D004527 1.4e-121 440.3 331 68.0
Thhalv10006010m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 1.4e-121 440.3 329 67.8
CARHR141140 Cardamine hirsuta HOM05D003942 ORTHO05D004527 1.5e-120 436.8 328 69.2
Carub.0004s2857 Capsella rubella HOM05D003942 ORTHO05D004527 2.0e-120 436.4 329 68.1
BraA09t40766Z Brassica rapa HOM05D003942 ORTHO05D004527 2.6e-120 436.0 333 65.8
C08p36210 Brassica napus HOM05D003942 ORTHO05D004527 3.4e-120 435.6 333 66.1
BolC8t51203H Brassica oleracea HOM05D003942 ORTHO05D004527 3.4e-120 435.6 333 66.1
Thhalv10001467m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 4.5e-120 435.3 329 68.1
Sp4g27940 Schrenkiella parvula HOM05D003942 ORTHO05D004527 1.3e-119 433.7 329 67.8
EL10Ac1g00428 Beta vulgaris HOM05D003942 ORTHO05D004527 2.7e-117 426.0 304 69.4
BcaC09g52244 Brassica carinata HOM05D003942 ORTHO05D004527 3.6e-117 425.6 329 66.6
Aa31LG1G27300 Aethionema arabicum HOM05D003942 ORTHO05D004527 4.6e-117 425.2 333 66.1
BcaC02g10219 Brassica carinata HOM05D003942 ORTHO05D004527 1.0e-116 424.1 329 66.9
Haze_15488 Corylus avellana HOM05D003942 ORTHO05D004527 1.8e-113 413.3 333 64.9
Sc23g0002980 Simmondsia chinensis HOM05D003942 ORTHO05D004527 1.8e-113 413.3 276 73.9
Os03g0106000 Oryza sativa ssp. japonica HOM05D003942 ORTHO05D004527 1.9e-110 403.3 336 63.4
unitig_8.g3394 Utricularia gibba HOM05D003942 ORTHO05D004527 9.4e-110 401.0 344 61.3
AT2G45870 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 2.6e-107 392.9 276 71.7
Zm00001eb000510 Zea mays HOM05D003942 ORTHO05D004527 2.6e-107 392.9 354 58.2
HPP92_006558 Vanilla planifolia HOM05D003942 ORTHO05D004527 8.2e-106 387.9 338 58.6
SEGI_25793 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 1.4e-100 370.5 317 58.7
SEGI_35716 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 4.0e-100 369.0 339 58.4
Pp3c3_22870 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.0e-99 366.7 328 56.4
Mapoly0071s0037 Marchantia polymorpha HOM05D003942 ORTHO05D004527 2.2e-98 363.2 339 54.6
Pp3c4_15850 Physcomitrium patens HOM05D003942 ORTHO05D004527 7.0e-97 358.2 331 55.0
SMO364G0338 Selaginella moellendorffii HOM05D003942 ORTHO05D004527 7.7e-88 328.2 290 55.9
Duzib138G1448 Durio zibethinus HOM05D003942 ORTHO05D004527 2.8e-82 309.7 332 54.5
Nn1g01512 Nelumbo nucifera HOM05D003942 ORTHO05D004527 4.9e-82 308.9 332 52.4
Gohir.D11G092500 Gossypium hirsutum HOM05D003942 ORTHO05D004527 1.0e-79 301.2 205 75.6
vmacro13277 Vaccinium macrocarpon HOM05D003942 ORTHO05D004527 6.8e-76 288.5 348 48.9
AagrBONN_evm.TU.Sc2ySwM_228.958 Anthoceros agrestis HOM05D003942 ORTHO05D004527 6.4e-74 282.0 292 49.3
AagrBONN_evm.TU.Sc2ySwM_344.3805 Anthoceros agrestis HOM05D003942 ORTHO05D004527 4.1e-73 279.3 318 45.3
Mapoly0009s0131 Marchantia polymorpha HOM05D003942 ORTHO05D004527 7.8e-72 275.0 288 47.6
ATR0680G085 Amborella trichopoda HOM05D003942 ORTHO05D004527 3.0e-71 273.1 333 47.7
AT3G61320 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 4.3e-70 269.2 206 66.0
AagrBONN_evm.TU.Sc2ySwM_362.1957 Anthoceros agrestis HOM05D003942 ORTHO05D004527 3.6e-69 266.2 300 46.3
Pp3c1_3670 Physcomitrium patens HOM05D003942 ORTHO05D004527 8.3e-66 255.0 282 44.3
Pp3c11_9440 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.4e-65 253.4 304 42.1
Pp3c1_34560 Physcomitrium patens HOM05D003942 ORTHO05D004527 7.0e-65 251.9 293 44.0
CBR_g44610 Chara braunii HOM05D000505 ORTHO05D000301 4.6e-64 249.2 314 41.7
Pp3c2_13700 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.0e-63 248.1 336 41.1
Pp3c1_34600 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.5e-62 244.2 304 41.1
HPP92_011356 Vanilla planifolia HOM05D003942 ORTHO05D004527 4.0e-60 236.1 162 67.3
Pp3c6_24250 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.4e-59 233.0 287 41.8
Pp3c14_6660 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.3e-58 231.1 267 42.3
MD01G1202300 Malus domestica HOM05D003942 ORTHO05D004527 1.6e-56 224.2 203 60.6
Oeu020563.1 Olea europaea HOM05D003942 ORTHO05D004527 5.6e-54 215.7 149 75.2
FAN10G2852 Fragaria x ananassa HOM05D003942 ORTHO05D004527 3.1e-52 209.9 210 57.6
CBR_g772 Chara braunii HOM05D003942 ORTHO05D004527 2.0e-51 207.2 304 37.8
CARHR171630 Cardamine hirsuta HOM05D003942 ORTHO05D004527 2.7e-48 196.8 152 68.4
AagrBONN_evm.TU.Sc2ySwM_228.2628 Anthoceros agrestis HOM05D003942 ORTHO05D004527 2.3e-47 193.7 153 57.5
C05p09980 Brassica napus HOM05D003942 ORTHO05D004527 1.5e-43 181.0 126 73.0
Cre11.g474700 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.5e-43 181.0 333 35.1
Cre06.g277650 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 2.0e-43 180.6 312 33.0
Cre16.g663400 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 8.4e-42 175.3 309 36.6
Cre16.g662600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.4e-41 174.5 328 34.8
Cre16.g663450 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 4.2e-41 172.9 333 34.8
FAN10G0144 Fragaria x ananassa HOM05D003942 ORTHO05D004527 3.5e-40 169.9 121 74.4
SEGI_34263 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 3.5e-40 169.9 149 62.4
Cre06.g261750 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 4.6e-40 169.5 305 31.8
CBR_g38187 Chara braunii HOM05D003942 ORTHO05D004527 9.6e-38 161.8 207 43.5
HPP92_011355 Vanilla planifolia HOM05D003942 ORTHO05D004527 1.4e-33 147.9 121 62.0
PRCOL_00004040 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.9e-33 147.5 311 32.5
Cre01.g038100 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 7.1e-33 145.6 311 29.3
Cre07.g355300 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 5.6e-30 136.0 308 29.5
BcaB02g11262 Brassica carinata HOM05D003942 ORTHO05D004527 1.6e-29 134.4 113 57.5
PRCOL_00003097 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 2.6e-27 127.1 288 30.2
FAN10G3156 Fragaria x ananassa HOM05D000449 ORTHO05D004527 7.6e-27 125.6 159 49.7
Pp3c11_6680 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.3e-26 124.8 110 50.9
PRCOL_00006054 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.1e-25 121.7 293 28.7
SEGI_01331 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 4.2e-25 119.8 82 68.3
MCO01G232 Micromonas commoda HOM05D003942 ORTHO05D004527 1.8e-23 114.4 303 29.4
PRCOL_00005764 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 3.9e-23 113.2 314 29.6
Pp3c6_17920 Physcomitrium patens HOM05D003942 ORTHO05D004527 5.1e-23 112.8 185 35.7
Oeu020564.1 Olea europaea HOM05D003942 ORTHO05D004527 6.7e-23 112.5 77 74.0
Cre03.g199600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 3.3e-22 110.2 208 30.3
PRCOL_00003548 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 5.6e-22 109.4 307 29.0
MCO09G357 Micromonas commoda HOM05D003942 ORTHO05D004527 2.1e-16 90.9 342 25.1
PRCOL_00004398 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 2.7e-16 90.5 315 27.6
MCO01G007 Micromonas commoda HOM05D003942 ORTHO05D004527 6.0e-16 89.4 297 25.9
PSO478G4509 Papaver somniferum HOM05D003942 ORTHO05D004527 1.4e-12 78.2 59 66.1
Pp3c3_14710 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.4e-09 68.2 143 32.2
Pp3c20_3390 Physcomitrium patens HOM05D003942 ORTHO05D004527 6.7e-07 59.3 81 40.7


User provided reference genes

Program Settings