Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA240G1980 Erigeron canadensis HOM05D004003 ORTHO05D004595 2.2e-91 339.0 170 100.0
ECA240G4361 Erigeron canadensis HOM05D004003 ORTHO05D004595 2.2e-91 339.0 170 100.0
ECA240G4047 Erigeron canadensis HOM05D004003 ORTHO05D004595 1.3e-48 196.8 169 59.8
ECA238G0868 Erigeron canadensis HOM05D004003 ORTHO05D004595 2.6e-28 129.4 160 46.2
Gohir.A11G012800 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.0e-24 117.5 153 41.8
Nitab4.5_0011314g0010 Nicotiana tabacum HOM05D004003 ORTHO05D004595 1.0e-24 117.5 129 45.0
ECA233G0998 Erigeron canadensis HOM05D004003 ORTHO05D004595 1.3e-24 117.1 129 48.8
SGA_v2.0_scaffold10G05280 Striga asiatica HOM05D004003 ORTHO05D004595 1.7e-24 116.7 137 44.5
CiPaw.06G004300 Carya illinoinensis HOM05D004003 ORTHO05D004595 2.3e-24 116.3 125 44.0
Lsat_1_v5_gn_2_131500 Lactuca sativa HOM05D004003 ORTHO05D004595 2.3e-24 116.3 125 47.2
Sopen06g012130 Solanum pennellii HOM05D004003 ORTHO05D004595 3.9e-24 115.5 130 44.6
unitig_0.g1158 Utricularia gibba HOM05D004003 ORTHO05D004595 3.9e-24 115.5 124 46.0
Duzib084G0289 Durio zibethinus HOM05D004003 ORTHO05D004595 5.1e-24 115.2 153 41.2
Gohir.D11G013100 Gossypium hirsutum HOM05D004003 ORTHO05D004595 5.1e-24 115.2 153 41.2
Solyc06g036350.3 Solanum lycopersicum HOM05D004003 ORTHO05D004595 5.1e-24 115.2 130 44.6
Actinidia03142 Actinidia chinensis HOM05D004003 ORTHO05D004595 6.6e-24 114.8 133 43.6
Aqoxy7G00202 Aquilegia oxysepala HOM05D004003 ORTHO05D004595 6.6e-24 114.8 125 44.0
Oeu061668.1 Olea europaea HOM05D004003 ORTHO05D004595 6.6e-24 114.8 131 44.3
Rhsim03G0192400 Rhododendron simsii HOM05D004003 ORTHO05D004595 6.6e-24 114.8 152 40.1
Actinidia08590 Actinidia chinensis HOM05D004003 ORTHO05D004595 8.6e-24 114.4 178 37.1
Cc02_g02230 Coffea canephora HOM05D004003 ORTHO05D004595 8.6e-24 114.4 124 45.2
Nitab4.5_0000472g0260 Nicotiana tabacum HOM05D004003 ORTHO05D004595 8.6e-24 114.4 117 46.2
Solyc03g007660.4 Solanum lycopersicum HOM05D004003 ORTHO05D004595 8.6e-24 114.4 129 44.2
PGSC0003DMG400028905 Solanum tuberosum HOM05D004003 ORTHO05D004595 8.6e-24 114.4 130 44.6
TAR629G0127 Trochodendron aralioides HOM05D004003 ORTHO05D004595 8.6e-24 114.4 125 43.2
Actinidia31844 Actinidia chinensis HOM05D004003 ORTHO05D004595 1.1e-23 114.0 152 41.4
Duzib205G1856 Durio zibethinus HOM05D004003 ORTHO05D004595 1.1e-23 114.0 153 40.5
Rhsim09G0201100 Rhododendron simsii HOM05D004003 ORTHO05D004595 1.1e-23 114.0 132 43.2
Sopen03g003590 Solanum pennellii HOM05D004003 ORTHO05D004595 1.1e-23 114.0 129 44.2
Ah.11g045360 Amaranthus hybridus HOM05D004003 ORTHO05D004595 1.5e-23 113.6 128 43.0
DCAR_010652 Daucus carota HOM05D004003 ORTHO05D004595 1.5e-23 113.6 146 41.8
PSO478G4828 Papaver somniferum HOM05D004003 ORTHO05D004595 1.5e-23 113.6 139 41.7
MELO3C006949.2 Cucumis melo HOM05D004003 ORTHO05D004595 2.5e-23 112.8 133 41.4
Migut.F01081 Erythranthe guttata HOM05D004003 ORTHO05D004595 2.5e-23 112.8 117 45.3
PSO017G3679 Papaver somniferum HOM05D004003 ORTHO05D004595 2.5e-23 112.8 139 41.7
RcHm_v2.0_Chr1g0378851 Rosa chinensis HOM05D004003 ORTHO05D004595 2.5e-23 112.8 136 42.6
GSVIVG01028820001 Vitis vinifera HOM05D004003 ORTHO05D004595 2.5e-23 112.8 124 43.5
MSTRG.8697 Avicennia marina HOM05D004003 ORTHO05D004595 3.3e-23 112.5 118 45.8
EL10Ac2g03211 Beta vulgaris HOM05D004003 ORTHO05D004595 3.3e-23 112.5 139 42.4
Eucgr.A02717 Eucalyptus grandis HOM05D004003 ORTHO05D004595 3.3e-23 112.5 126 42.9
Thhalv10026409m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 3.3e-23 112.5 124 42.7
FvH4_7g30480 Fragaria vesca HOM05D004003 ORTHO05D004595 3.3e-23 112.5 136 41.9
FAN01G1512 Fragaria x ananassa HOM05D004003 ORTHO05D004595 3.3e-23 112.5 136 41.9
FAN06G1184 Fragaria x ananassa HOM05D004003 ORTHO05D004595 3.3e-23 112.5 136 41.9
FAN06G3020 Fragaria x ananassa HOM05D004003 ORTHO05D004595 3.3e-23 112.5 136 41.9
Lsat_1_v5_gn_9_56860 Lactuca sativa HOM05D004003 ORTHO05D004595 3.3e-23 112.5 130 45.4
Prupe.2G302600 Prunus persica HOM05D004003 ORTHO05D004595 3.3e-23 112.5 136 42.6
Sed0014667 Sechium edule HOM05D004003 ORTHO05D004595 3.3e-23 112.5 119 45.4
A03p15550 Brassica napus HOM05D004003 ORTHO05D004595 4.3e-23 112.1 122 43.4
AUR62037745 Chenopodium quinoa HOM05D004003 ORTHO05D004595 4.3e-23 112.1 139 41.7
FAN10G2159 Fragaria x ananassa HOM05D004003 ORTHO05D004595 4.3e-23 112.1 136 41.9
FAN10G2319 Fragaria x ananassa HOM05D004003 ORTHO05D004595 4.3e-23 112.1 136 41.9
TAR636G0624 Trochodendron aralioides HOM05D004003 ORTHO05D004595 4.3e-23 112.1 139 41.7
CsaV3_3G017590 Cucumis sativus L. HOM05D004003 ORTHO05D004595 5.6e-23 111.7 123 43.9
Peaxi162Scf00444g00034 Petunia axillaris HOM05D004003 ORTHO05D004595 5.6e-23 111.7 129 43.4
Sed0009881 Sechium edule HOM05D004003 ORTHO05D004595 5.6e-23 111.7 117 45.3
ClCG05G008500 Citrullus lanatus HOM05D004003 ORTHO05D004595 7.3e-23 111.3 123 43.1
Thhalv10014849m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 7.3e-23 111.3 124 42.7
Manes.06G153700 Manihot esculenta HOM05D004003 ORTHO05D004595 7.3e-23 111.3 133 42.1
Nn6g32413 Nelumbo nucifera HOM05D004003 ORTHO05D004595 7.3e-23 111.3 125 43.2
HPP92_001384 Vanilla planifolia HOM05D004003 ORTHO05D004595 7.3e-23 111.3 127 44.1
A02p11580 Brassica napus HOM05D004003 ORTHO05D004595 9.6e-23 110.9 122 42.6
BraA02t06220Z Brassica rapa HOM05D004003 ORTHO05D004595 9.6e-23 110.9 122 42.6
BraA03t10847Z Brassica rapa HOM05D004003 ORTHO05D004595 9.6e-23 110.9 122 43.4
Dinv35269 Davidia involucrata HOM05D004003 ORTHO05D004595 9.6e-23 110.9 117 44.4
FAN03G0349 Fragaria x ananassa HOM05D004003 ORTHO05D004595 9.6e-23 110.9 136 41.2
FAN03G2611 Fragaria x ananassa HOM05D004003 ORTHO05D004595 9.6e-23 110.9 136 41.2
Gorai.008G273600 Gossypium raimondii HOM05D004003 ORTHO05D004595 9.6e-23 110.9 153 40.5
Oeu003331.1 Olea europaea HOM05D004003 ORTHO05D004595 9.6e-23 110.9 124 42.7
Atru.chr1.335 Acer truncatum HOM05D004003 ORTHO05D004595 1.2e-22 110.5 124 44.4
BolC3t14217H Brassica oleracea HOM05D004003 ORTHO05D004595 1.2e-22 110.5 122 42.6
CAN.G126.15 Capsicum annuum HOM05D004003 ORTHO05D004595 1.2e-22 110.5 129 42.6
COL.COLO4_30289 Corchorus olitorius HOM05D004003 ORTHO05D004595 1.2e-22 110.5 152 40.8
Gohir.D12G255500 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.2e-22 110.5 153 40.5
Gohir.D12G255550 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.2e-22 110.5 153 40.5
Gorai.007G013400 Gossypium raimondii HOM05D004003 ORTHO05D004595 1.2e-22 110.5 155 40.6
MD01G1210300 Malus domestica HOM05D004003 ORTHO05D004595 1.2e-22 110.5 136 41.2
AL8G27280 Arabidopsis lyrata HOM05D004003 ORTHO05D004595 1.6e-22 110.2 124 41.9
AT5G52840 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 1.6e-22 110.2 124 41.9
BcaC01g06202 Brassica carinata HOM05D004003 ORTHO05D004595 1.6e-22 110.2 117 43.6
C03p18160 Brassica napus HOM05D004003 ORTHO05D004595 1.6e-22 110.2 117 43.6
PGR042G1718 Punica granatum HOM05D004003 ORTHO05D004595 1.6e-22 110.2 140 42.9
Aa31LG3G9080 Aethionema arabicum HOM05D004003 ORTHO05D004595 2.1e-22 109.8 123 43.1
CARHR265770 Cardamine hirsuta HOM05D004003 ORTHO05D004595 2.1e-22 109.8 124 41.9
Manes.14G021000 Manihot esculenta HOM05D004003 ORTHO05D004595 2.1e-22 109.8 120 43.3
SalBow2G3526 Salvia bowleyana HOM05D004003 ORTHO05D004595 2.1e-22 109.8 124 42.7
BcaB01g04212 Brassica carinata HOM05D004003 ORTHO05D004595 2.8e-22 109.4 122 42.6
Ciclev10006072m.g Citrus clementina HOM05D004003 ORTHO05D004595 2.8e-22 109.4 124 43.5
HanXRQChr15g0494181 Helianthus annuus HOM05D004003 ORTHO05D004595 2.8e-22 109.4 140 40.7
Sp6g15000 Schrenkiella parvula HOM05D004003 ORTHO05D004595 2.8e-22 109.4 124 41.9
Thecc.03G186200 Theobroma cacao HOM05D004003 ORTHO05D004595 2.8e-22 109.4 152 40.1
VMungo0464G2050 Vigna mungo HOM05D004003 ORTHO05D004595 2.8e-22 109.4 124 43.5
BcaB08g35638 Brassica carinata HOM05D004003 ORTHO05D004595 3.6e-22 109.0 122 42.6
Carub.0008s1300 Capsella rubella HOM05D004003 ORTHO05D004595 3.6e-22 109.0 124 41.9
ECA232G1033 Erigeron canadensis HOM05D004003 ORTHO05D004595 3.6e-22 109.0 130 44.6
Hma1.2p1_1713F.1_g298900 Hydrangea macrophylla HOM05D004003 ORTHO05D004595 3.6e-22 109.0 117 44.4
THA.LOC104800278 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 3.6e-22 109.0 134 41.0
CSS0000705 Camellia sinensis var. sinensis HOM05D004003 ORTHO05D004595 4.7e-22 108.6 152 38.8
Sc14g0006860 Simmondsia chinensis HOM05D004003 ORTHO05D004595 4.7e-22 108.6 133 42.1
THA.LOC104825117 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 4.7e-22 108.6 117 43.6
BcaB05g21985 Brassica carinata HOM05D004003 ORTHO05D004595 6.2e-22 108.2 122 41.8
DCAR_020275 Daucus carota HOM05D004003 ORTHO05D004595 6.2e-22 108.2 115 45.2
Sp7g25950 Schrenkiella parvula HOM05D004003 ORTHO05D004595 6.2e-22 108.2 125 41.6
Hund13071 Selenicereus undatus HOM05D004003 ORTHO05D004595 6.2e-22 108.2 139 41.7
Sabra04G0047300 Salix brachista HOM05D004003 ORTHO05D004595 8.1e-22 107.8 139 40.3
BcaC04g20535 Brassica carinata HOM05D004003 ORTHO05D004595 1.1e-21 107.5 139 40.3
A10p10290 Brassica napus HOM05D004003 ORTHO05D004595 1.1e-21 107.5 139 40.3
C09p42440 Brassica napus HOM05D004003 ORTHO05D004595 1.1e-21 107.5 139 40.3
BraA10t43109Z Brassica rapa HOM05D004003 ORTHO05D004595 1.1e-21 107.5 139 40.3
MD07G1280400 Malus domestica HOM05D004003 ORTHO05D004595 1.1e-21 107.5 117 43.6
Lj1A1007T57 Lonicera japonica HOM05D004003 ORTHO05D004595 1.4e-21 107.1 145 41.4
Lj1A1007T58 Lonicera japonica HOM05D004003 ORTHO05D004595 1.4e-21 107.1 145 41.4
Lj2g0001989 Lotus japonicus HOM05D004003 ORTHO05D004595 1.4e-21 107.1 138 42.8
ATR0721G154 Amborella trichopoda HOM05D004003 ORTHO05D004595 1.8e-21 106.7 120 45.8
Haze_00063 Corylus avellana HOM05D004003 ORTHO05D004595 1.8e-21 106.7 117 44.4
Gohir.A12G253200 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.8e-21 106.7 153 39.2
Zm00001eb015010 Zea mays HOM05D004003 ORTHO05D004595 2.4e-21 106.3 119 42.9
arahy.Tifrunner.gnm1.ann1.SB31NP Arachis hypogaea HOM05D004003 ORTHO05D004595 3.1e-21 105.9 124 42.7
Dinv28379 Davidia involucrata HOM05D004003 ORTHO05D004595 3.1e-21 105.9 112 45.5
Lalb_Chr03g0034981 Lupinus albus HOM05D004003 ORTHO05D004595 3.1e-21 105.9 124 41.9
PSO478G1314 Papaver somniferum HOM05D004003 ORTHO05D004595 4.0e-21 105.5 139 39.6
Potri.004G071900 Populus trichocarpa HOM05D004003 ORTHO05D004595 4.0e-21 105.5 139 40.3
Phvul.004G105700 Phaseolus vulgaris HOM05D004003 ORTHO05D004595 6.9e-21 104.8 124 41.1
Sabra17G0124400 Salix brachista HOM05D004003 ORTHO05D004595 6.9e-21 104.8 118 42.4
CANSAT21G1389 Cannabis sativa HOM05D004003 ORTHO05D004595 8.9e-21 104.4 118 40.7
CANSAT21G1446 Cannabis sativa HOM05D004003 ORTHO05D004595 8.9e-21 104.4 118 40.7
Os03g0313000 Oryza sativa ssp. japonica HOM05D004003 ORTHO05D004595 1.5e-20 103.6 119 42.0
Potri.017G149100 Populus trichocarpa HOM05D004003 ORTHO05D004595 1.5e-20 103.6 117 42.7
Glyma.09G129000 Glycine max HOM05D004003 ORTHO05D004595 2.0e-20 103.2 117 43.6
QL09p012375 Quercus lobata HOM05D004003 ORTHO05D004595 2.0e-20 103.2 122 41.8
TWI23G0858 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 2.0e-20 103.2 118 42.4
TWI14G1326 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 2.6e-20 102.8 121 42.1
Lalb_Chr19g0130491 Lupinus albus HOM05D004003 ORTHO05D004595 3.4e-20 102.4 119 41.2
arahy.Tifrunner.gnm1.ann1.R03NAB Arachis hypogaea HOM05D004003 ORTHO05D004595 4.4e-20 102.1 124 41.1
CDE05G3305 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 4.4e-20 102.1 123 39.8
C02p19300 Brassica napus HOM05D004003 ORTHO05D004595 1.3e-19 100.5 127 40.9
BolC2t08066H Brassica oleracea HOM05D004003 ORTHO05D004595 1.3e-19 100.5 127 40.9
CDE05G0545 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 1.3e-19 100.5 123 39.0
Ca_20595_v3 Cicer arietinum L. HOM05D004003 ORTHO05D004595 1.3e-19 100.5 146 38.4
Psat0s1604g0040 Pisum sativum HOM05D004003 ORTHO05D004595 3.2e-18 95.9 148 37.8
Ah.10g032500 Amaranthus hybridus HOM05D004003 ORTHO05D004595 7.1e-18 94.7 126 42.1
Medtr6g053280 Medicago truncatula HOM05D004003 ORTHO05D004595 9.3e-18 94.4 154 37.0
Psat5g299680 Pisum sativum HOM05D004003 ORTHO05D004595 1.6e-17 93.6 145 37.2
TPR.G27150 Trifolium pratense HOM05D004003 ORTHO05D004595 3.9e-16 89.0 140 35.7
vmacro06614 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 6.6e-16 88.2 208 30.3
MD13G1261600 Malus domestica HOM05D004003 ORTHO05D004595 1.1e-15 87.4 106 39.6
AUR62042233 Chenopodium quinoa HOM05D004003 ORTHO05D004595 1.9e-15 86.7 139 36.7
MD00G1172600 Malus domestica HOM05D004003 ORTHO05D004595 1.9e-15 86.7 103 40.8
SEGI_14933 Sequoiadendron giganteum HOM05D004003 ORTHO05D004595 3.3e-15 85.9 109 42.2
Pp3c5_12290 Physcomitrium patens HOM05D004003 ORTHO05D004595 5.6e-15 85.1 104 41.3
Ah.03g141030 Amaranthus hybridus HOM05D004003 ORTHO05D004595 4.8e-14 82.0 76 50.0
vmacro09809 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 4.8e-14 82.0 154 34.4
HanXRQChr10g0304961 Helianthus annuus HOM05D004003 ORTHO05D004595 8.1e-14 81.3 67 55.2
AagrBONN_evm.TU.Sc2ySwM_344.4010 Anthoceros agrestis HOM05D004003 ORTHO05D004595 5.3e-13 78.6 94 41.5
Zm00001eb395850 Zea mays HOM05D004003 ORTHO05D004595 9.0e-13 77.8 71 50.7
BolC9t57124H Brassica oleracea HOM05D004003 ORTHO05D004595 3.4e-12 75.9 139 34.5
CBR_g31069 Chara braunii HOM05D004003 ORTHO05D004595 3.4e-12 75.9 78 43.6
BcaC03g14495 Brassica carinata HOM05D004003 ORTHO05D004595 4.5e-12 75.5 56 60.7
Mapoly0111s0029 Marchantia polymorpha HOM05D004003 ORTHO05D004595 4.5e-12 75.5 94 37.2
SMO119G0129 Selaginella moellendorffii HOM05D004003 ORTHO05D004595 7.6e-12 74.7 79 41.8
Dinv24022 Davidia involucrata HOM05D004003 ORTHO05D004595 2.2e-11 73.2 90 42.2
Thhalv10015894m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 8.4e-11 71.2 111 35.1
RcHm_v2.0_Chr1g0362161 Rosa chinensis HOM05D004003 ORTHO05D004595 3.2e-10 69.3 53 60.4
Psat6g098040 Pisum sativum HOM05D000395 ORTHO05D004595 5.4e-10 68.6 67 44.8
MCO01G593 Micromonas commoda HOM05D004003 ORTHO05D004595 5.1e-08 62.0 79 39.2
MCO01G594 Micromonas commoda HOM05D004003 ORTHO05D004595 5.1e-08 62.0 79 39.2
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 6.7e-08 61.6 53 54.7
Haze_26197 Corylus avellana HOM05D004003 ORTHO05D004595 7.4e-07 58.2 79 31.6


User provided reference genes

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