Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA240G1837 Erigeron canadensis HOM05D004036 ORTHO05D004576 1.5e-98 362.8 186 100.0
HanXRQChr13g0409481 Helianthus annuus HOM05D004036 ORTHO05D004576 5.5e-72 274.6 186 79.6
Lsat_1_v5_gn_3_108141 Lactuca sativa HOM05D004036 ORTHO05D004576 2.6e-53 212.6 184 68.5
Peaxi162Scf00105g01426 Petunia axillaris HOM05D004036 ORTHO05D004576 3.8e-33 145.6 201 45.8
Nitab4.5_0006579g0060 Nicotiana tabacum HOM05D004036 ORTHO05D004576 6.5e-33 144.8 199 46.2
Nitab4.5_0000125g0270 Nicotiana tabacum HOM05D004036 ORTHO05D004576 8.5e-33 144.4 199 46.2
HanXRQChr03g0077811 Helianthus annuus HOM05D004036 ORTHO05D004576 2.5e-32 142.9 92 81.5
Hma1.2p1_0175F.1_g077210 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 7.2e-32 141.4 176 47.7
CAN.G21.9 Capsicum annuum HOM05D004036 ORTHO05D004576 9.4e-32 141.0 197 46.2
Oeu045176.1 Olea europaea HOM05D004036 ORTHO05D004576 1.0e-30 137.5 195 45.1
Manes.03G064800 Manihot esculenta HOM05D004036 ORTHO05D004576 2.3e-30 136.3 186 46.8
Hma1.2p1_0003F.1_g003650 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 1.5e-29 133.7 175 50.3
Solyc08g067810.3 Solanum lycopersicum HOM05D004036 ORTHO05D004576 3.4e-29 132.5 197 44.7
PGSC0003DMG400033628 Solanum tuberosum HOM05D004036 ORTHO05D004576 3.4e-29 132.5 200 45.0
Glyma.14G129200 Glycine max HOM05D004036 ORTHO05D004576 5.7e-29 131.7 180 42.8
Sopen08g021750 Solanum pennellii HOM05D004036 ORTHO05D004576 9.8e-29 131.0 197 44.2
COL.COLO4_24066 Corchorus olitorius HOM05D004036 ORTHO05D004576 2.2e-28 129.8 191 45.0
Gohir.A06G047900 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.4e-27 126.3 180 44.4
Duzib150G0431 Durio zibethinus HOM05D004036 ORTHO05D004576 3.1e-27 125.9 177 43.5
DCAR_003061 Daucus carota HOM05D004036 ORTHO05D004576 1.6e-26 123.6 181 46.4
Gohir.D06G047900 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.6e-26 123.6 180 44.4
Manes.16G068200 Manihot esculenta HOM05D004036 ORTHO05D004576 2.0e-26 123.2 195 45.1
QL12p031289 Quercus lobata HOM05D004036 ORTHO05D004576 2.0e-26 123.2 183 44.8
Cfa013210 Carpinus fangiana HOM05D004036 ORTHO05D004576 2.7e-26 122.9 183 44.8
Atru.chr7.2325 Acer truncatum HOM05D004036 ORTHO05D004576 3.5e-26 122.5 192 45.8
Duzib187G1985 Durio zibethinus HOM05D004036 ORTHO05D004576 1.0e-25 120.9 184 42.9
vmacro05446 Vaccinium macrocarpon HOM05D004036 ORTHO05D004576 1.0e-25 120.9 206 42.7
Dinv35883 Davidia involucrata HOM05D004036 ORTHO05D004576 1.3e-25 120.6 115 60.9
Gohir.A05G010600 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.9e-25 119.4 172 43.6
Gohir.D12G195700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.9e-25 119.4 180 42.2
Gorai.009G011700 Gossypium raimondii HOM05D004036 ORTHO05D004576 2.9e-25 119.4 180 41.7
Ciclev10009480m.g Citrus clementina HOM05D004036 ORTHO05D004576 3.8e-25 119.0 187 41.2
Migut.E01501 Erythranthe guttata HOM05D004036 ORTHO05D004576 3.8e-25 119.0 180 42.8
Gohir.D01G158400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.8e-25 119.0 179 40.2
MSTRG.14001 Avicennia marina HOM05D004036 ORTHO05D004576 5.0e-25 118.6 186 44.1
Glyma.17G203900 Glycine max HOM05D004036 ORTHO05D004576 8.6e-25 117.9 188 42.0
Gohir.A12G126300 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.1e-24 117.5 180 42.2
Potri.006G246600 Populus trichocarpa HOM05D004036 ORTHO05D004576 1.1e-24 117.5 187 42.2
PGR031G0366 Punica granatum HOM05D004036 ORTHO05D004576 1.1e-24 117.5 177 42.4
Gohir.D09G022200 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.5e-24 116.3 179 40.8
Thecc.09G144100 Theobroma cacao HOM05D004036 ORTHO05D004576 2.5e-24 116.3 185 43.2
Gohir.A11G185400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.3e-24 115.9 180 41.7
Gorai.004G151900 Gossypium raimondii HOM05D004036 ORTHO05D004576 3.3e-24 115.9 179 42.5
Sabra18G0035300 Salix brachista HOM05D004036 ORTHO05D004576 4.2e-24 115.5 186 43.5
Gohir.D09G023175 Gossypium hirsutum HOM05D004036 ORTHO05D004576 5.5e-24 115.2 180 41.7
Prupe.1G466700 Prunus persica HOM05D004036 ORTHO05D004576 5.5e-24 115.2 181 40.9
FAN15G1681 Fragaria x ananassa HOM05D004036 ORTHO05D004576 7.2e-24 114.8 189 41.8
Phvul.001G055700 Phaseolus vulgaris HOM05D004036 ORTHO05D004576 7.2e-24 114.8 183 39.9
Gohir.D05G335100 Gossypium hirsutum HOM05D004036 ORTHO05D004576 9.5e-24 114.4 180 41.7
RcHm_v2.0_Chr6g0312751 Rosa chinensis HOM05D004036 ORTHO05D004576 9.5e-24 114.4 181 41.4
TWI63G0992 Tripterygium wilfordii HOM05D004036 ORTHO05D004576 9.5e-24 114.4 186 43.0
FAN20G2367 Fragaria x ananassa HOM05D004036 ORTHO05D004576 1.2e-23 114.0 186 41.4
TAR626G0352 Trochodendron aralioides HOM05D004036 ORTHO05D004576 1.2e-23 114.0 196 39.3
FvH4_2g30160 Fragaria vesca HOM05D004036 ORTHO05D004576 1.6e-23 113.6 186 40.9
FAN24G0425 Fragaria x ananassa HOM05D004036 ORTHO05D004576 1.6e-23 113.6 186 40.9
Sabra06G0192900 Salix brachista HOM05D004036 ORTHO05D004576 1.6e-23 113.6 180 44.4
TAR624G0048 Trochodendron aralioides HOM05D004036 ORTHO05D004576 1.6e-23 113.6 205 37.1
FAN27G0504 Fragaria x ananassa HOM05D004036 ORTHO05D004576 2.1e-23 113.2 186 40.9
Gohir.A12G241700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.8e-23 112.8 180 41.1
arahy.Tifrunner.gnm1.ann1.7NC9IZ Arachis hypogaea HOM05D004036 ORTHO05D004576 6.1e-23 111.7 181 42.0
TWI34G1922 Tripterygium wilfordii HOM05D004036 ORTHO05D004576 8.0e-23 111.3 172 42.4
Gorai.008G052900 Gossypium raimondii HOM05D004036 ORTHO05D004576 1.4e-22 110.5 172 41.9
VMungo0647G1622 Vigna mungo HOM05D004036 ORTHO05D004576 1.8e-22 110.2 186 39.2
arahy.Tifrunner.gnm1.ann1.AAJ54F Arachis hypogaea HOM05D004036 ORTHO05D004576 3.0e-22 109.4 178 42.1
Haze_21623 Corylus avellana HOM05D004036 ORTHO05D004576 3.0e-22 109.4 223 38.1
Eucgr.C01818 Eucalyptus grandis HOM05D004036 ORTHO05D004576 3.0e-22 109.4 200 40.5
CANSAT56G2568 Cannabis sativa HOM05D004036 ORTHO05D004576 4.0e-22 109.0 171 42.7
Gohir.D05G011350 Gossypium hirsutum HOM05D004036 ORTHO05D004576 5.2e-22 108.6 160 41.2
SGA_v2.0_scaffold163G38098 Striga asiatica HOM05D004036 ORTHO05D004576 5.2e-22 108.6 188 38.3
MSTRG.1647 Avicennia marina HOM05D004036 ORTHO05D004576 1.2e-21 107.5 187 36.9
CiPaw.08G015700 Carya illinoinensis HOM05D004036 ORTHO05D004576 1.2e-21 107.5 182 40.7
SalBow8G4507 Salvia bowleyana HOM05D004036 ORTHO05D004576 4.4e-21 105.5 169 40.8
SalBow8G4816 Salvia bowleyana HOM05D004036 ORTHO05D004576 4.4e-21 105.5 169 40.8
CSS0014753 Camellia sinensis var. sinensis HOM05D004036 ORTHO05D004576 2.8e-20 102.8 153 45.1
Cc08_g08300 Coffea canephora HOM05D004036 ORTHO05D004576 4.9e-20 102.1 203 41.9
Aqoxy7G01846 Aquilegia oxysepala HOM05D004036 ORTHO05D004576 1.1e-19 100.9 176 39.8
CiPaw.03G235800 Carya illinoinensis HOM05D004036 ORTHO05D004576 1.1e-19 100.9 195 36.9
Lj5g0012132 Lotus japonicus HOM05D004036 ORTHO05D004576 2.4e-19 99.8 182 35.7
THA.LOC104799217 Tarenaya hassleriana HOM05D004036 ORTHO05D004576 2.4e-19 99.8 184 39.7
Thhalv10014836m.g Eutrema salsugineum HOM05D004036 ORTHO05D004576 5.4e-19 98.6 189 38.1
Medtr1g011280 Medicago truncatula HOM05D004036 ORTHO05D004576 5.4e-19 98.6 184 40.2
Thhalv10004997m.g Eutrema salsugineum HOM05D004036 ORTHO05D004576 7.0e-19 98.2 178 38.2
Lalb_Chr08g0243781 Lupinus albus HOM05D004036 ORTHO05D004576 1.2e-18 97.4 185 38.9
Psat6g031000 Pisum sativum HOM05D004036 ORTHO05D004576 2.0e-18 96.7 185 37.8
AL6G22100 Arabidopsis lyrata HOM05D004036 ORTHO05D004576 2.7e-18 96.3 188 38.3
QL02p086217 Quercus lobata HOM05D004036 ORTHO05D004576 5.9e-18 95.1 198 36.4
Lalb_Chr23g0269031 Lupinus albus HOM05D004036 ORTHO05D004576 7.8e-18 94.7 185 38.9
Sp6g32160 Schrenkiella parvula HOM05D004036 ORTHO05D004576 1.0e-17 94.4 183 39.3
AT5G11440 Arabidopsis thaliana HOM05D004036 ORTHO05D004576 1.7e-17 93.6 191 35.1
ClCG05G017210 Citrullus lanatus HOM05D004036 ORTHO05D004576 2.9e-17 92.8 187 38.0
Aa31LG3G15750 Aethionema arabicum HOM05D004036 ORTHO05D004576 3.9e-17 92.4 187 38.5
BcaB01g06306 Brassica carinata HOM05D004036 ORTHO05D004576 3.9e-17 92.4 171 37.4
Sed0023915 Sechium edule HOM05D004036 ORTHO05D004576 3.9e-17 92.4 193 39.9
Actinidia14638 Actinidia chinensis HOM05D004036 ORTHO05D004576 5.0e-17 92.0 114 50.0
CsaV3_3G046690 Cucumis sativus L. HOM05D004036 ORTHO05D004576 8.6e-17 91.3 186 38.2
DCAR_007682 Daucus carota HOM05D004036 ORTHO05D004576 8.6e-17 91.3 141 42.6
Oeu031563.3 Olea europaea HOM05D004036 ORTHO05D004576 8.6e-17 91.3 155 38.7
BcaC04g19226 Brassica carinata HOM05D004036 ORTHO05D004576 1.5e-16 90.5 172 39.0
A10p26310 Brassica napus HOM05D004036 ORTHO05D004576 1.5e-16 90.5 168 36.3
C09p65420 Brassica napus HOM05D004036 ORTHO05D004576 1.5e-16 90.5 172 39.0
BolC9t59367H Brassica oleracea HOM05D004036 ORTHO05D004576 1.5e-16 90.5 172 39.0
Cpa.g.sc91.6 Carica papaya HOM05D004036 ORTHO05D004576 1.5e-16 90.5 90 48.9
Gorai.010G053700 Gossypium raimondii HOM05D004036 ORTHO05D004576 1.9e-16 90.1 145 41.4
Aa31LG11G4630 Aethionema arabicum HOM05D004036 ORTHO05D004576 2.5e-16 89.7 160 38.8
CARHR201790 Cardamine hirsuta HOM05D004036 ORTHO05D004576 3.3e-16 89.4 200 37.0
BcaC03g13367 Brassica carinata HOM05D004036 ORTHO05D004576 5.6e-16 88.6 89 51.7
Sp2g22000 Schrenkiella parvula HOM05D004036 ORTHO05D004576 1.2e-15 87.4 177 36.7
TPR.G20095 Trifolium pratense HOM05D004036 ORTHO05D004576 1.2e-15 87.4 185 34.6
C07p42280 Brassica napus HOM05D004036 ORTHO05D004576 1.6e-15 87.0 181 34.8
BolC7t44757H Brassica oleracea HOM05D004036 ORTHO05D004576 1.6e-15 87.0 181 34.8
A06p36250 Brassica napus HOM05D004036 ORTHO05D004576 2.1e-15 86.7 181 34.8
BraA06t26547Z Brassica rapa HOM05D004036 ORTHO05D004576 2.1e-15 86.7 181 34.8
GSVIVG01015440001 Vitis vinifera HOM05D004036 ORTHO05D004576 2.1e-15 86.7 89 52.8
Gohir.A07G032200 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.8e-15 86.3 143 40.6
Gohir.A08G237500 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.8e-15 86.3 143 40.6
Sc23g0007020 Simmondsia chinensis HOM05D004036 ORTHO05D004576 2.8e-15 86.3 136 39.7
Carub.0006s0989 Capsella rubella HOM05D004036 ORTHO05D004576 3.6e-15 85.9 190 36.8
MBI01_g10034_MAGBIO Magnolia biondii HOM05D004036 ORTHO05D004576 4.7e-15 85.5 201 35.3
BcaB08g37059 Brassica carinata HOM05D004036 ORTHO05D004576 5.2e-14 82.0 188 34.6
A02p01010 Brassica napus HOM05D004036 ORTHO05D004576 5.2e-14 82.0 178 36.0
BraA02t05082Z Brassica rapa HOM05D004036 ORTHO05D004576 5.2e-14 82.0 178 36.0
A03p05000 Brassica napus HOM05D004036 ORTHO05D004576 8.9e-14 81.3 176 34.7
CARHR187840 Cardamine hirsuta HOM05D004036 ORTHO05D004576 8.9e-14 81.3 150 36.0
AL6G37340 Arabidopsis lyrata HOM05D004036 ORTHO05D004576 1.5e-13 80.5 158 34.8
Oeu019418.1 Olea europaea HOM05D004036 ORTHO05D004576 1.5e-13 80.5 190 34.2
BcaNung01927 Brassica carinata HOM05D004036 ORTHO05D004576 2.6e-13 79.7 96 44.8
SGA_v2.0_scaffold169G38632 Striga asiatica HOM05D004036 ORTHO05D004576 2.6e-13 79.7 195 30.3
AT5G25540 Arabidopsis thaliana HOM05D004036 ORTHO05D004576 3.4e-13 79.3 189 32.8
Carub.0006s2340 Capsella rubella HOM05D004036 ORTHO05D004576 3.4e-13 79.3 181 34.8
BraA10t44688Z Brassica rapa HOM05D004036 ORTHO05D004576 4.4e-13 79.0 179 35.8
MD08G1136600 Malus domestica HOM05D004036 ORTHO05D004576 4.4e-13 79.0 82 56.1
C02p05040 Brassica napus HOM05D004036 ORTHO05D004576 7.5e-13 78.2 178 34.8
MELO3C003669.2 Cucumis melo HOM05D004036 ORTHO05D004576 9.8e-13 77.8 157 36.9
BcaB01g05484 Brassica carinata HOM05D004036 ORTHO05D004576 1.3e-12 77.4 175 33.7
BolC3t13087H Brassica oleracea HOM05D004036 ORTHO05D004576 1.3e-12 77.4 175 33.7
C03p05740 Brassica napus HOM05D004036 ORTHO05D004576 2.2e-12 76.6 175 33.7
THA.LOC104815044 Tarenaya hassleriana HOM05D004036 ORTHO05D004576 2.2e-12 76.6 160 37.5
EL10Ac2g02537 Beta vulgaris HOM05D004036 ORTHO05D004576 3.7e-12 75.9 176 34.7
AUR62032381 Chenopodium quinoa HOM05D004036 ORTHO05D004576 3.7e-12 75.9 176 34.1
MBI04_g26645_MAGBIO Magnolia biondii HOM05D004036 ORTHO05D004576 8.3e-12 74.7 197 33.5
Ah.12g063370 Amaranthus hybridus HOM05D004036 ORTHO05D004576 1.1e-11 74.3 180 31.7
AUR62024838 Chenopodium quinoa HOM05D004036 ORTHO05D004576 1.1e-11 74.3 176 34.1
BolC2t12008H Brassica oleracea HOM05D004036 ORTHO05D004576 2.4e-11 73.2 176 29.0
C02p59450 Brassica napus HOM05D004036 ORTHO05D004576 4.1e-11 72.4 182 29.7
Hund25658 Selenicereus undatus HOM05D004036 ORTHO05D004576 4.1e-11 72.4 176 33.0
Sed0025074 Sechium edule HOM05D004036 ORTHO05D004576 5.4e-11 72.0 163 36.8
A02p39670 Brassica napus HOM05D004036 ORTHO05D004576 1.6e-10 70.5 182 29.7
BraA02t08932Z Brassica rapa HOM05D004036 ORTHO05D004576 1.6e-10 70.5 182 29.7
Nn2g11835 Nelumbo nucifera HOM05D004036 ORTHO05D004576 2.7e-10 69.7 155 38.1
BcaB07g29991 Brassica carinata HOM05D004036 ORTHO05D004576 7.8e-10 68.2 172 29.7
BcaNung07259 Brassica carinata HOM05D000175 ORTHO05D000481 7.8e-10 68.2 172 29.7
PSO063G5334 Papaver somniferum HOM05D004036 ORTHO05D004576 1.7e-09 67.0 170 30.6
Gohir.D04G088301 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.3e-09 66.6 56 53.6
Gohir.D12G143101 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.3e-09 66.6 56 53.6
PSO782G2888 Papaver somniferum HOM05D004036 ORTHO05D004576 5.0e-09 65.5 153 30.1
Nn8g39276 Nelumbo nucifera HOM05D004036 ORTHO05D004576 6.6e-09 65.1 155 36.1
BcaB04g19786 Brassica carinata HOM05D004036 ORTHO05D004576 1.1e-08 64.3 161 32.9
C09p06800 Brassica napus HOM05D004036 ORTHO05D004576 9.5e-08 61.2 90 40.0
BolC9t53601H Brassica oleracea HOM05D004036 ORTHO05D004576 9.5e-08 61.2 90 40.0
TAR383G0233 Trochodendron aralioides HOM05D004036 ORTHO05D004576 1.2e-07 60.8 147 29.9
Prupe.7G234300 Prunus persica HOM05D004036 ORTHO05D004576 2.1e-07 60.1 153 32.7
ATR0037G046 Amborella trichopoda HOM05D004036 ORTHO05D004576 2.3e-06 56.6 179 33.5
unitig_85.g27159 Utricularia gibba HOM05D050274 ORTHO05D004576 4.0e-06 55.8 194 27.8
QL02p017294 Quercus lobata HOM05D000001 ORTHO05D004044 5.2e-06 55.5 89 41.6


User provided reference genes

Program Settings