Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA240G1625 Erigeron canadensis HOM05D006132 ORTHO05D007305 0.0e+00 3823.1 1925 100.0
HanXRQChr03g0077991 Helianthus annuus HOM05D006132 ORTHO05D007305 0.0e+00 2838.9 1916 76.4
Lsat_1_v5_gn_3_109020 Lactuca sativa HOM05D006132 ORTHO05D007305 0.0e+00 2669.8 1939 72.5
Dinv23402 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 2275.7 1936 62.9
Lj8C561G12 Lonicera japonica HOM05D006132 ORTHO05D007305 0.0e+00 2265.7 1880 63.5
GSVIVG01035326001 Vitis vinifera HOM05D006132 ORTHO05D007305 0.0e+00 2173.7 1868 61.0
Dinv02537 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 2172.1 1944 60.4
vmacro00180 Vaccinium macrocarpon HOM05D006132 ORTHO05D007305 0.0e+00 2138.2 2043 58.0
QL12p040855 Quercus lobata HOM05D006132 ORTHO05D007305 0.0e+00 2132.5 1913 59.5
Cc08_g10020 Coffea canephora HOM05D006132 ORTHO05D007305 0.0e+00 2119.7 2044 56.8
Haze_01967 Corylus avellana HOM05D006132 ORTHO05D007305 0.0e+00 2090.1 1909 58.9
CiPaw.07G201400 Carya illinoinensis HOM05D006132 ORTHO05D007305 0.0e+00 2087.4 2018 56.5
Prupe.1G443500 Prunus persica HOM05D006132 ORTHO05D007305 0.0e+00 2079.3 1902 59.0
MD08G1108900 Malus domestica HOM05D006132 ORTHO05D007305 0.0e+00 2073.9 1909 58.0
MSTRG.25925 Avicennia marina HOM05D006132 ORTHO05D007305 0.0e+00 2073.5 1912 57.8
FvH4_2g35140 Fragaria vesca HOM05D006132 ORTHO05D007305 0.0e+00 2072.7 2023 56.8
Ciclev10010526m.g Citrus clementina HOM05D006132 ORTHO05D007305 0.0e+00 2065.8 2007 56.1
RcHm_v2.0_Chr6g0306811 Rosa chinensis HOM05D006132 ORTHO05D007305 0.0e+00 2053.5 1903 58.1
Migut.A00170 Erythranthe guttata HOM05D006132 ORTHO05D007305 0.0e+00 2047.7 1950 56.8
Sopen08g019670 Solanum pennellii HOM05D006132 ORTHO05D007305 0.0e+00 2043.1 2006 55.6
Atru.chr7.2044 Acer truncatum HOM05D006132 ORTHO05D007305 0.0e+00 2042.3 1986 55.8
Potri.018G057900 Populus trichocarpa HOM05D006132 ORTHO05D007305 0.0e+00 2039.6 1941 57.6
Manes.03G057600 Manihot esculenta HOM05D006132 ORTHO05D007305 0.0e+00 2032.7 1999 56.5
Thecc.09G049200 Theobroma cacao HOM05D006132 ORTHO05D007305 0.0e+00 2030.8 1902 57.2
COL.COLO4_21010 Corchorus olitorius HOM05D006132 ORTHO05D007305 0.0e+00 2025.4 1925 56.8
CAN.G9.6 Capsicum annuum HOM05D006132 ORTHO05D007305 0.0e+00 2017.7 2005 55.0
TAR636G1718 Trochodendron aralioides HOM05D006132 ORTHO05D007305 0.0e+00 2016.5 2018 56.1
Sc09g0009530 Simmondsia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 2011.9 1944 56.3
Gorai.001G024600 Gossypium raimondii HOM05D006132 ORTHO05D007305 0.0e+00 2011.5 1900 56.9
Nn8g39007 Nelumbo nucifera HOM05D006132 ORTHO05D007305 0.0e+00 2005.3 2036 54.6
Oeu038827.1 Olea europaea HOM05D006132 ORTHO05D007305 0.0e+00 1979.9 1986 54.8
TWI34G0160 Tripterygium wilfordii HOM05D006132 ORTHO05D007305 0.0e+00 1970.7 1927 56.8
DCAR_007699 Daucus carota HOM05D006132 ORTHO05D007305 0.0e+00 1968.0 1925 56.2
Ca_15565_v3 Cicer arietinum L. HOM05D006132 ORTHO05D007305 0.0e+00 1963.0 1952 54.5
Glyma.06G088900 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 1958.7 1926 55.2
AUR62040212 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 1956.8 1979 54.0
Duzib168G1248 Durio zibethinus HOM05D006132 ORTHO05D007305 0.0e+00 1956.0 2030 53.4
Sed0028022 Sechium edule HOM05D006132 ORTHO05D007305 0.0e+00 1951.4 1937 54.5
Glyma.04G087200 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 1950.6 1958 54.1
MELO3C003478.2 Cucumis melo HOM05D006132 ORTHO05D007305 0.0e+00 1941.8 1960 54.1
VMungo1309G3161 Vigna mungo HOM05D006132 ORTHO05D007305 0.0e+00 1941.8 1945 54.2
PGR031G1631 Punica granatum HOM05D006132 ORTHO05D007305 0.0e+00 1941.4 1907 55.3
Gohir.D07G023900 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 1936.0 1888 56.2
SalBow4G1475 Salvia bowleyana HOM05D006132 ORTHO05D007305 0.0e+00 1932.9 1907 55.2
Medtr3g110417 Medicago truncatula HOM05D006132 ORTHO05D007305 0.0e+00 1931.0 1904 55.0
CsaV3_3G048410 Cucumis sativus L. HOM05D006132 ORTHO05D007305 0.0e+00 1929.8 1969 53.6
Lalb_Chr08g0242871 Lupinus albus HOM05D006132 ORTHO05D007305 0.0e+00 1923.3 1957 53.3
Lj1g0008631 Lotus japonicus HOM05D006132 ORTHO05D007305 0.0e+00 1922.9 1951 53.6
AUR62009214 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 1922.1 1981 53.8
Phvul.009G112700 Phaseolus vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 1918.7 1934 54.0
SGA_v2.0_scaffold103G30057 Striga asiatica HOM05D006132 ORTHO05D007305 0.0e+00 1911.0 2031 52.4
Psat0s3156g0040 Pisum sativum HOM05D006132 ORTHO05D007305 0.0e+00 1909.0 1904 54.5
ClCG11G015000 Citrullus lanatus HOM05D006132 ORTHO05D007305 0.0e+00 1905.6 2002 52.7
PSO210G7354 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 1900.2 1967 54.0
PSO210G2191 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 1895.2 1928 54.0
Ah.11g044450 Amaranthus hybridus HOM05D006132 ORTHO05D007305 0.0e+00 1894.0 1965 53.0
TPR.G12374 Trifolium pratense HOM05D006132 ORTHO05D007305 0.0e+00 1893.2 1901 54.7
EL10Ac2g03960 Beta vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 1883.2 2114 50.2
Aqoxy7G03955 Aquilegia oxysepala HOM05D006132 ORTHO05D007305 0.0e+00 1878.2 2037 52.4
Rhsim11G0049000 Rhododendron simsii HOM05D006132 ORTHO05D007305 0.0e+00 1874.0 1867 55.3
Nitab4.5_0000318g0080 Nicotiana tabacum HOM05D006132 ORTHO05D007305 0.0e+00 1868.6 1885 55.1
THA.LOC104818581 Tarenaya hassleriana HOM05D006132 ORTHO05D007305 0.0e+00 1855.9 1965 52.7
arahy.Tifrunner.gnm1.ann1.GM174E Arachis hypogaea HOM05D006132 ORTHO05D007305 0.0e+00 1855.5 2021 51.6
MBI01_g01249_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 0.0e+00 1852.4 2065 50.8
AL7G18910 Arabidopsis lyrata HOM05D006132 ORTHO05D007305 0.0e+00 1849.3 1862 54.0
Carub.0007s0767 Capsella rubella HOM05D006132 ORTHO05D007305 0.0e+00 1842.4 1866 54.1
AT4G32820 Arabidopsis thaliana HOM05D006132 ORTHO05D007305 0.0e+00 1841.6 1872 53.5
Hund19486 Selenicereus undatus HOM05D006132 ORTHO05D007305 0.0e+00 1840.1 1961 53.1
Sp7g30590 Schrenkiella parvula HOM05D006132 ORTHO05D007305 0.0e+00 1837.0 1862 53.1
Thhalv10026823m.g Eutrema salsugineum HOM05D006132 ORTHO05D007305 0.0e+00 1823.9 1858 53.4
Gohir.A07G022180 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 1818.5 1766 55.8
C01p06070 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 1811.6 1864 53.4
BcaC09g52078 Brassica carinata HOM05D006132 ORTHO05D007305 0.0e+00 1809.7 1863 53.5
arahy.Tifrunner.gnm1.ann1.XPLI6K Arachis hypogaea HOM05D006132 ORTHO05D007305 0.0e+00 1809.3 1965 51.6
A01p05470 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 1796.6 1860 53.0
BolC1t00600H Brassica oleracea HOM05D006132 ORTHO05D007305 0.0e+00 1783.1 1886 52.6
BraA01t00520Z Brassica rapa HOM05D006132 ORTHO05D007305 0.0e+00 1779.6 1887 52.0
Aa31sc208G40 Aethionema arabicum HOM05D006132 ORTHO05D007305 0.0e+00 1762.3 1859 52.2
Aa31LG5G17300 Aethionema arabicum HOM05D006132 ORTHO05D007305 0.0e+00 1756.5 1874 51.6
Eucgr.C00619 Eucalyptus grandis HOM05D006132 ORTHO05D007305 0.0e+00 1752.3 1872 52.4
Actinidia01213 Actinidia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 1728.0 1874 53.6
ATR0815G026 Amborella trichopoda HOM05D006132 ORTHO05D007305 0.0e+00 1622.8 2125 45.0
Solyc08g066010.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 0.0e+00 1576.6 1527 56.3
unitig_0.g2566 Utricularia gibba HOM05D006132 ORTHO05D007305 0.0e+00 1456.8 1872 46.4
Cpa.g.sc7.235 Carica papaya HOM05D006132 ORTHO05D007305 0.0e+00 1442.2 1551 51.5
HPP92_019594 Vanilla planifolia HOM05D006132 ORTHO05D007305 0.0e+00 1421.4 1712 46.5
FAN20G0110 Fragaria x ananassa HOM05D006132 ORTHO05D007305 0.0e+00 1342.4 1328 56.2
CSS0000087 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 0.0e+00 1328.5 1164 61.2
Pp3c4_1880 Physcomitrium patens HOM05D006132 ORTHO05D007305 0.0e+00 1165.6 2221 35.7
SMO365G0056 Selaginella moellendorffii HOM05D006132 ORTHO05D007305 0.0e+00 1147.5 1875 39.5
Mapoly0021s0014 Marchantia polymorpha HOM05D006132 ORTHO05D007305 0.0e+00 1079.7 2150 34.8
AagrBONN_evm.TU.Sc2ySwM_344.875 Anthoceros agrestis HOM05D006132 ORTHO05D007305 5.5e-308 1062.0 2034 34.9
CSS0048337 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 1.7e-280 970.7 703 70.8
Peaxi162Scf00840g00429 Petunia axillaris HOM05D006132 ORTHO05D007305 1.7e-232 811.2 776 55.9
Nitab4.5_0002021g0060 Nicotiana tabacum HOM05D006132 ORTHO05D007305 8.9e-226 788.9 1330 39.8
CSS0029204 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 9.9e-225 785.4 709 60.9
CARHR240810 Cardamine hirsuta HOM05D006132 ORTHO05D007305 8.4e-224 782.3 678 59.3
CBR_g22939 Chara braunii HOM05D006132 ORTHO05D000048 1.4e-215 755.0 2079 29.1
SHI18807 Sapria himalayana HOM05D006132 ORTHO05D007305 1.1e-202 712.2 1144 37.9
Psat4g077080 Pisum sativum HOM05D006132 ORTHO05D007305 3.9e-181 640.6 753 48.5
Psat4g077000 Pisum sativum HOM05D006132 ORTHO05D007305 2.2e-160 571.6 707 46.5
SHI18802 Sapria himalayana HOM05D006132 ORTHO05D007305 2.9e-160 571.2 760 45.4
Solyc08g066000.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 2.9e-131 474.9 487 53.8
Peaxi162Scf00840g00428 Petunia axillaris HOM05D006132 ORTHO05D007305 2.3e-125 455.3 359 63.2
TAR636G2276 Trochodendron aralioides HOM05D006132 ORTHO05D007305 3.8e-83 315.1 264 62.9
Lsat_1_v5_gn_0_25341 Lactuca sativa HOM05D006132 ORTHO05D007305 6.9e-77 294.3 263 60.8
CSS0021543 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 8.8e-64 250.8 218 58.7
SHI18803 Sapria himalayana HOM05D006132 ORTHO05D007305 8.2e-62 244.2 274 50.4
Psat2g119040 Pisum sativum HOM05D006132 ORTHO05D007305 1.4e-61 243.4 222 56.8
Zm00001eb053280 Zea mays HOM05D006132 ORTHO05D007305 2.3e-56 226.1 281 42.0
Cpa.g.sc7.234 Carica papaya HOM05D006132 ORTHO05D007305 7.7e-52 211.1 124 80.6
TAR636G0297 Trochodendron aralioides HOM05D006132 ORTHO05D007305 7.7e-52 211.1 349 40.7
Carub.0003s0455 Capsella rubella HOM05D006132 ORTHO05D007305 4.2e-34 152.1 200 43.0
Zm00001eb053310 Zea mays HOM05D006132 ORTHO05D007305 9.1e-29 134.4 236 38.6
MBI04_g05153_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 2.3e-27 129.8 152 44.7
Zm00001eb053300 Zea mays HOM05D006132 ORTHO05D007305 4.2e-26 125.6 137 47.4
Glyma.18G112500 Glycine max HOM05D006132 ORTHO05D007305 1.4e-24 120.6 82 79.3
Zm00001eb053290 Zea mays HOM05D006132 ORTHO05D007305 2.8e-17 96.3 68 64.7
Sabra06G0183100 Salix brachista HOM05D006132 ORTHO05D007305 1.8e-16 93.6 83 57.8
Os03g0685750 Oryza sativa ssp. japonica HOM05D006132 ORTHO05D007305 6.8e-16 91.7 120 39.2
CiPaw.04G074200 Carya illinoinensis HOM05D006132 ORTHO05D007305 4.9e-14 85.5 61 63.9
CDE12G0288 Ceratophyllum demersum HOM05D004517 ORTHO05D005366 3.5e-12 79.3 58 67.2
MBI04_g44310_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 3.9e-11 75.9 68 51.5
Glyma.11G174000 Glycine max HOM05D006132 ORTHO05D007305 6.2e-09 68.6 66 47.0
SMO351G0355 Selaginella moellendorffii HOM05D023170 ORTHO05D007305 1.1e-08 67.8 71 56.3


User provided reference genes

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