Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA240G1536 Erigeron canadensis HOM05D003721 ORTHO05D004303 0.0e+00 1261.1 705 100.0
HanXRQChr06g0166991 Helianthus annuus HOM05D003721 ORTHO05D004303 1.3e-222 776.9 676 69.8
Lsat_1_v5_gn_3_138600 Lactuca sativa HOM05D003721 ORTHO05D004303 1.6e-209 733.4 736 63.9
Dinv32529 Davidia involucrata HOM05D003721 ORTHO05D004303 3.6e-201 705.7 795 57.1
Atru.chr5.592 Acer truncatum HOM05D003721 ORTHO05D004303 2.4e-192 676.4 804 55.0
CSS0038344 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 2.6e-191 672.9 778 55.4
CSS0014201 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 7.6e-191 671.4 779 55.6
CSS0042065 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 5.6e-186 655.2 776 54.9
COL.COLO4_06374 Corchorus olitorius HOM05D003721 ORTHO05D004303 3.7e-185 652.5 792 53.4
Thecc.01G351200 Theobroma cacao HOM05D003721 ORTHO05D004303 8.1e-185 651.4 777 54.7
Duzib133G0509 Durio zibethinus HOM05D003721 ORTHO05D004303 3.4e-183 646.0 792 53.8
TWI59G1183 Tripterygium wilfordii HOM05D003721 ORTHO05D004303 4.5e-183 645.6 799 53.6
Lj7A506T70 Lonicera japonica HOM05D003721 ORTHO05D004303 7.6e-183 644.8 757 56.4
Cfa003861 Carpinus fangiana HOM05D003721 ORTHO05D004303 4.2e-181 639.0 799 53.7
Potri.002G165500 Populus trichocarpa HOM05D003721 ORTHO05D004303 2.1e-180 636.7 783 53.5
Manes.07G084500 Manihot esculenta HOM05D003721 ORTHO05D004303 7.9e-180 634.8 781 53.5
DCAR_008641 Daucus carota HOM05D003721 ORTHO05D004303 1.1e-178 630.9 782 53.7
QL04p055909 Quercus lobata HOM05D003721 ORTHO05D004303 1.1e-178 630.9 792 52.8
TAR629G3186 Trochodendron aralioides HOM05D003721 ORTHO05D004303 1.5e-178 630.6 813 51.0
Potri.014G091300 Populus trichocarpa HOM05D003721 ORTHO05D004303 3.1e-176 622.9 781 53.0
Nn1g01721 Nelumbo nucifera HOM05D003721 ORTHO05D004303 1.2e-175 620.9 806 51.6
Rhsim07G0009400 Rhododendron simsii HOM05D003721 ORTHO05D004303 1.2e-175 620.9 776 53.0
vmacro13221 Vaccinium macrocarpon HOM05D003721 ORTHO05D004303 1.5e-175 620.5 830 51.2
Dinv43871 Davidia involucrata HOM05D003721 ORTHO05D004303 5.9e-175 618.6 791 52.0
CiPaw.01G068800 Carya illinoinensis HOM05D003721 ORTHO05D004303 7.6e-175 618.2 789 53.5
Sopen01g039000 Solanum pennellii HOM05D003721 ORTHO05D004303 1.4e-173 614.0 778 51.4
Glyma.07G062500 Glycine max HOM05D003721 ORTHO05D004303 1.9e-173 613.6 794 51.4
Solyc01g095210.3 Solanum lycopersicum HOM05D003721 ORTHO05D004303 1.9e-173 613.6 780 51.8
Ciclev10018933m.g Citrus clementina HOM05D003721 ORTHO05D004303 4.6e-172 609.0 786 52.5
CANSAT94G0013 Cannabis sativa HOM05D003721 ORTHO05D004303 1.0e-171 607.8 792 51.8
GSVIVG01027009001 Vitis vinifera HOM05D003721 ORTHO05D004303 2.5e-170 603.2 709 55.4
Actinidia20169 Actinidia chinensis HOM05D003721 ORTHO05D004303 7.4e-170 601.7 798 51.0
arahy.Tifrunner.gnm1.ann1.X01UQ7 Arachis hypogaea HOM05D003721 ORTHO05D004303 7.4e-170 601.7 755 50.7
FAN03G0785 Fragaria x ananassa HOM05D003721 ORTHO05D004303 6.3e-169 598.6 788 52.3
Lalb_Chr17g0338961 Lupinus albus HOM05D003721 ORTHO05D004303 1.1e-168 597.8 781 50.7
arahy.Tifrunner.gnm1.ann1.J8U9TP Arachis hypogaea HOM05D003721 ORTHO05D004303 1.2e-167 594.3 788 49.2
Sed0001790 Sechium edule HOM05D003721 ORTHO05D004303 1.5e-167 594.0 785 52.0
Gohir.D12G110000 Gossypium hirsutum HOM05D003721 ORTHO05D004303 3.4e-167 592.8 784 51.3
Sabra14G0066200 Salix brachista HOM05D003721 ORTHO05D004303 5.9e-167 592.0 783 52.5
Glyma.18G239200 Glycine max HOM05D003721 ORTHO05D004303 8.5e-166 588.2 776 50.4
Cc02_g38690 Coffea canephora HOM05D003721 ORTHO05D004303 1.1e-165 587.8 772 49.9
Duzib138G0478 Durio zibethinus HOM05D003721 ORTHO05D004303 1.4e-165 587.4 777 51.7
Lj1g0019249 Lotus japonicus HOM05D003721 ORTHO05D004303 8.8e-163 578.2 787 49.7
VMungo0331G1476 Vigna mungo HOM05D003721 ORTHO05D004303 2.0e-162 577.0 723 52.8
Ca_07946_v3 Cicer arietinum L. HOM05D003721 ORTHO05D004303 3.3e-162 576.2 783 49.6
Peaxi162Scf00020g01717 Petunia axillaris HOM05D003721 ORTHO05D004303 3.3e-162 576.2 752 51.6
RcHm_v2.0_Chr1g0357861 Rosa chinensis HOM05D003721 ORTHO05D004303 1.7e-161 573.9 788 50.4
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 6.3e-161 572.0 776 51.2
FAN10G1929 Fragaria x ananassa HOM05D003721 ORTHO05D004303 1.1e-160 571.2 788 50.8
Glyma.16G030600 Glycine max HOM05D003721 ORTHO05D004303 1.2e-159 567.8 758 50.1
PGR031G3178 Punica granatum HOM05D003721 ORTHO05D004303 1.2e-159 567.8 769 50.5
Hund16678 Selenicereus undatus HOM05D003721 ORTHO05D004303 3.4e-159 566.2 703 54.1
Gohir.A11G093000 Gossypium hirsutum HOM05D003721 ORTHO05D004303 4.5e-159 565.8 740 51.5
TPR.G29569 Trifolium pratense HOM05D003721 ORTHO05D004303 1.7e-158 563.9 775 48.4
arahy.Tifrunner.gnm1.ann1.QXLJ4L Arachis hypogaea HOM05D003721 ORTHO05D004303 3.8e-158 562.8 767 50.2
FAN10G1794 Fragaria x ananassa HOM05D003721 ORTHO05D004303 3.8e-158 562.8 788 50.1
FvH4_7g15532 Fragaria vesca HOM05D003721 ORTHO05D004303 1.1e-157 561.2 788 50.3
Glyma.09G253700 Glycine max HOM05D003721 ORTHO05D004303 1.4e-157 560.8 778 49.2
AUR62004419 Chenopodium quinoa HOM05D003721 ORTHO05D004303 2.5e-157 560.1 695 53.4
PSO170G3080 Papaver somniferum HOM05D003721 ORTHO05D004303 3.2e-157 559.7 762 50.0
MD07G1130300 Malus domestica HOM05D003721 ORTHO05D004303 1.2e-156 557.8 786 49.7
FAN06G3247 Fragaria x ananassa HOM05D003721 ORTHO05D004303 1.6e-156 557.4 788 50.0
Medtr7g079200 Medicago truncatula HOM05D003721 ORTHO05D004303 1.6e-156 557.4 764 47.9
AUR62022625 Chenopodium quinoa HOM05D003721 ORTHO05D004303 5.2e-155 552.4 695 52.7
CsaV3_6G000920 Cucumis sativus L. HOM05D003721 ORTHO05D004303 4.4e-154 549.3 796 48.0
arahy.Tifrunner.gnm1.ann1.M56506 Arachis hypogaea HOM05D003721 ORTHO05D004303 1.3e-153 547.7 767 49.3
Nitab4.5_0000915g0020 Nicotiana tabacum HOM05D003721 ORTHO05D004303 6.3e-153 545.4 772 49.4
CAN.G78.136 Capsicum annuum HOM05D003721 ORTHO05D004303 1.1e-152 544.7 781 48.0
Prupe.2G178900 Prunus persica HOM05D003721 ORTHO05D004303 1.1e-152 544.7 779 48.7
Cpa.g.sc11.59 Carica papaya HOM05D003721 ORTHO05D004303 2.4e-152 543.5 517 62.3
FAN06G4946 Fragaria x ananassa HOM05D003721 ORTHO05D004303 5.3e-152 542.3 817 48.1
Sc23g0002500 Simmondsia chinensis HOM05D003721 ORTHO05D004303 7.0e-152 542.0 806 48.0
Sed0002636 Sechium edule HOM05D003721 ORTHO05D004303 1.6e-151 540.8 777 48.3
EL10Ac1g00346 Beta vulgaris HOM05D003721 ORTHO05D004303 6.5e-150 535.4 750 49.6
Phvul.010G105500 Phaseolus vulgaris HOM05D003721 ORTHO05D004303 1.2e-148 531.2 759 48.0
PSO063G0643 Papaver somniferum HOM05D003721 ORTHO05D004303 6.1e-148 528.9 767 48.1
Gohir.A12G106100 Gossypium hirsutum HOM05D003721 ORTHO05D004303 1.8e-147 527.3 783 48.1
Medtr8g028445 Medicago truncatula HOM05D003721 ORTHO05D004303 3.5e-143 513.1 710 48.3
Eucgr.D02329 Eucalyptus grandis HOM05D003721 ORTHO05D004303 7.7e-143 511.9 745 48.6
Sp5g01840 Schrenkiella parvula HOM05D003721 ORTHO05D004303 7.7e-143 511.9 739 46.8
Gorai.007G104100 Gossypium raimondii HOM05D003721 ORTHO05D004303 2.2e-142 510.4 753 46.3
Gorai.008G119300 Gossypium raimondii HOM05D003721 ORTHO05D004303 1.1e-141 508.1 785 46.8
Nitab4.5_0003501g0020 Nicotiana tabacum HOM05D003721 ORTHO05D004303 1.5e-141 507.7 772 46.5
TPR.G18168 Trifolium pratense HOM05D003721 ORTHO05D004303 2.5e-141 506.9 743 48.5
ClCG06G003380 Citrullus lanatus HOM05D003721 ORTHO05D004303 7.2e-141 505.4 861 44.3
Ca_03491_v3 Cicer arietinum L. HOM05D003721 ORTHO05D004303 9.4e-141 505.0 705 50.1
Thhalv10005812m.g Eutrema salsugineum HOM05D003721 ORTHO05D004303 2.1e-140 503.8 739 45.5
AT2G46180 Arabidopsis thaliana HOM05D003721 ORTHO05D004303 1.4e-139 501.1 750 46.7
MBI07_g11740_MAGBIO Magnolia biondii HOM05D003721 ORTHO05D004303 2.8e-137 493.4 803 46.3
A09p53630 Brassica napus HOM05D003721 ORTHO05D004303 1.1e-136 491.5 738 46.3
BcaC07g40669 Brassica carinata HOM05D003721 ORTHO05D004303 2.4e-136 490.3 741 46.7
C08p36410 Brassica napus HOM05D003721 ORTHO05D004303 2.4e-136 490.3 741 46.6
BolC8t51224H Brassica oleracea HOM05D003721 ORTHO05D004303 4.1e-136 489.6 741 46.6
Migut.B01806 Erythranthe guttata HOM05D003721 ORTHO05D004303 9.1e-136 488.4 782 45.5
Ah.05g180090 Amaranthus hybridus HOM05D003721 ORTHO05D004303 2.0e-135 487.3 695 49.4
BraA09t40785Z Brassica rapa HOM05D003721 ORTHO05D004303 1.3e-134 484.6 742 46.8
MELO3C021177.2 Cucumis melo HOM05D003721 ORTHO05D004303 9.5e-133 478.4 688 47.4
Aqoxy5G04062 Aquilegia oxysepala HOM05D003721 ORTHO05D004303 1.4e-131 474.6 813 44.8
C06p27570 Brassica napus HOM05D003721 ORTHO05D004303 1.4e-131 474.6 734 44.1
AL4G45430 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 1.8e-131 474.2 761 46.3
Haze_15575 Corylus avellana HOM05D003721 ORTHO05D004303 5.7e-130 469.2 611 53.5
SalBow3G1665 Salvia bowleyana HOM05D003721 ORTHO05D004303 1.3e-129 468.0 771 45.1
A07p25580 Brassica napus HOM05D003721 ORTHO05D004303 1.7e-129 467.6 741 43.6
Psat3g105680 Pisum sativum HOM05D003721 ORTHO05D004303 1.1e-128 464.9 622 49.7
Haze_15580 Corylus avellana HOM05D003721 ORTHO05D004303 1.4e-128 464.5 611 53.0
AT3G61570 Arabidopsis thaliana HOM05D003721 ORTHO05D004303 1.2e-127 461.5 739 44.1
VMungo1383G3272 Vigna mungo HOM05D003721 ORTHO05D004303 3.5e-127 459.9 726 45.0
Lalb_Chr04g0259321 Lupinus albus HOM05D003721 ORTHO05D004303 5.9e-127 459.1 482 56.6
CDE02G2110 Ceratophyllum demersum HOM05D003721 ORTHO05D004303 2.3e-126 457.2 747 44.0
BraA07t30199Z Brassica rapa HOM05D003721 ORTHO05D004303 1.1e-125 454.9 753 42.6
BolC6t37925H Brassica oleracea HOM05D003721 ORTHO05D004303 2.5e-125 453.8 755 42.6
unitig_52.g17061 Utricularia gibba HOM05D003721 ORTHO05D004303 5.6e-125 452.6 692 47.4
HPP92_023080 Vanilla planifolia HOM05D003721 ORTHO05D004303 7.3e-125 452.2 780 43.7
ATR1093G009 Amborella trichopoda HOM05D003721 ORTHO05D004303 1.6e-124 451.1 796 42.1
BcaC07g40653 Brassica carinata HOM05D003721 ORTHO05D004303 1.6e-124 451.1 749 44.9
AL5G43940 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 3.6e-124 449.9 736 43.6
Sp5g32820 Schrenkiella parvula HOM05D003721 ORTHO05D004303 3.6e-124 449.9 759 44.9
Phvul.008G057500 Phaseolus vulgaris HOM05D003721 ORTHO05D004303 6.1e-124 449.1 778 43.8
Thhalv10001332m.g Eutrema salsugineum HOM05D003721 ORTHO05D004303 4.0e-123 446.4 757 44.0
BcaC08g45136 Brassica carinata HOM05D003721 ORTHO05D004303 1.2e-122 444.9 744 42.7
Gohir.D11G097866 Gossypium hirsutum HOM05D003721 ORTHO05D004303 1.1e-120 438.3 602 49.7
BcaB02g07370 Brassica carinata HOM05D003721 ORTHO05D004303 7.0e-120 435.6 739 43.0
MD01G1072600 Malus domestica HOM05D003721 ORTHO05D004303 1.3e-118 431.4 787 42.9
MSTRG.20868 Avicennia marina HOM05D003721 ORTHO05D004303 1.1e-117 428.3 772 42.6
CDE08G1001 Ceratophyllum demersum HOM05D003721 ORTHO05D004303 1.9e-117 427.6 753 42.4
Zm00001eb042060 Zea mays HOM05D003721 ORTHO05D004303 1.2e-116 424.9 665 44.2
BcaC07g42682 Brassica carinata HOM05D003721 ORTHO05D004303 8.9e-115 418.7 654 45.9
Aa31LG1G27570 Aethionema arabicum HOM05D003721 ORTHO05D004303 2.6e-114 417.2 760 42.9
THA.LOC104817323 Tarenaya hassleriana HOM05D003721 ORTHO05D004303 3.4e-114 416.8 763 42.7
Carub.0004s2886 Capsella rubella HOM05D003721 ORTHO05D004303 6.0e-111 406.0 746 42.1
CARHR141460 Cardamine hirsuta HOM05D003721 ORTHO05D004303 2.0e-106 391.0 460 53.7
Oeu010635.1 Olea europaea HOM05D003721 ORTHO05D004303 7.5e-106 389.0 839 37.7
BcaC07g42673 Brassica carinata HOM05D003721 ORTHO05D004303 8.4e-97 359.0 695 39.7
PGSC0003DMG400000197 Solanum tuberosum HOM05D003721 ORTHO05D004303 8.4e-97 359.0 375 59.2
SEGI_16602 Sequoiadendron giganteum HOM05D003721 ORTHO05D004303 9.2e-96 355.5 339 61.4
Os08g0386900 Oryza sativa ssp. japonica HOM05D003721 ORTHO05D004303 2.1e-92 344.4 374 57.0
Mapoly0053s0042 Marchantia polymorpha HOM05D003721 ORTHO05D004303 5.2e-91 339.7 734 37.3
Sabra02G0146000 Salix brachista HOM05D003721 ORTHO05D004303 3.2e-88 330.5 592 41.4
TPR.G35781 Trifolium pratense HOM05D003721 ORTHO05D004303 2.8e-68 264.2 343 49.0
Actinidia37722 Actinidia chinensis HOM05D003721 ORTHO05D004074 1.1e-64 252.3 403 47.9
Pp3c12_14500 Physcomitrium patens HOM05D003721 ORTHO05D004303 2.7e-63 247.7 311 49.5
Hma1.2p1_0623F.1_g191170 Hydrangea macrophylla HOM05D003721 ORTHO05D004303 4.8e-60 236.9 357 49.3
Pp3c3_18730 Physcomitrium patens HOM05D003721 ORTHO05D004303 4.1e-59 233.8 727 32.5
BcaC07g40657 Brassica carinata HOM05D003721 ORTHO05D004303 5.5e-56 223.4 250 55.2
QL01p002178 Quercus lobata HOM05D003721 ORTHO05D004303 1.2e-55 222.2 327 48.3
Actinidia10078 Actinidia chinensis HOM05D003721 ORTHO05D004303 3.8e-49 200.7 399 41.6
AagrBONN_evm.TU.Sc2ySwM_369.3 Anthoceros agrestis HOM05D003721 ORTHO05D004303 8.5e-49 199.5 324 39.5
Haze_15579 Corylus avellana HOM05D003721 ORTHO05D004303 2.0e-42 178.3 191 55.0
arahy.Tifrunner.gnm1.ann1.LL4IHI Arachis hypogaea HOM05D003721 ORTHO05D004303 3.0e-38 164.5 145 61.4
Haze_15574 Corylus avellana HOM05D003721 ORTHO05D004303 2.1e-31 141.7 170 50.0
BcaC08g45231 Brassica carinata HOM05D003721 ORTHO05D004303 4.0e-30 137.5 145 55.2
SGA_v2.0_scaffold4G02274 Striga asiatica HOM05D003721 ORTHO05D004303 2.7e-26 124.8 183 49.2
SHI13345 Sapria himalayana HOM05D003721 ORTHO05D004303 2.7e-23 114.8 120 52.5
SEGI_39264 Sequoiadendron giganteum HOM05D003721 ORTHO05D004303 5.7e-21 107.1 346 29.5
MCO16G164 Micromonas commoda HOM05D003721 ORTHO05D004303 1.6e-18 99.0 283 33.2
Actinidia37723 Actinidia chinensis HOM05D003721 ORTHO05D004303 8.6e-17 93.2 176 41.5
Lalb_Chr04g0259331 Lupinus albus HOM05D003721 ORTHO05D004303 4.2e-16 90.9 247 34.8
CBR_g40304 Chara braunii HOM05D001539 ORTHO05D000937 9.5e-16 89.7 80 55.0
Actinidia21288 Actinidia chinensis HOM05D003721 ORTHO05D004303 1.0e-14 86.3 62 71.0
Cpa.g.sc11.56 Carica papaya HOM05D003721 ORTHO05D004303 1.2e-13 82.8 107 54.2
BcaC08g45137 Brassica carinata HOM05D003721 ORTHO05D004303 3.4e-13 81.3 283 33.2
Cre12.g495800 Chlamydomonas reinhardtii HOM05D003721 ORTHO05D004303 1.3e-12 79.3 203 33.0
AL5G44110 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 5.0e-09 67.4 73 52.1
Actinidia10079 Actinidia chinensis HOM05D003721 ORTHO05D004303 8.0e-07 60.1 85 52.9
arahy.Tifrunner.gnm1.ann1.W0C6E5 Arachis hypogaea HOM05D000200 ORTHO05D000262 1.8e-06 58.9 95 45.3


User provided reference genes

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