Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA240G1422 Erigeron canadensis HOM05D004002 ORTHO05D004668 1.7e-241 839.0 443 100.0
Lsat_1_v5_gn_7_43900 Lactuca sativa HOM05D004002 ORTHO05D004668 3.3e-168 595.5 418 74.2
HanXRQChr09g0241521 Helianthus annuus HOM05D004002 ORTHO05D004668 2.8e-167 592.4 418 74.2
Lsat_1_v5_gn_8_62220 Lactuca sativa HOM05D004002 ORTHO05D004668 8.3e-151 537.7 410 67.6
HanXRQChr05g0143441 Helianthus annuus HOM05D004002 ORTHO05D004668 7.0e-150 534.6 410 67.6
ECA236G2336 Erigeron canadensis HOM05D004002 ORTHO05D004668 1.6e-146 523.5 417 64.7
Dinv36495 Davidia involucrata HOM05D004002 ORTHO05D004668 9.5e-139 497.7 407 65.1
Actinidia21966 Actinidia chinensis HOM05D004002 ORTHO05D004668 2.6e-136 489.6 413 63.7
DCAR_014896 Daucus carota HOM05D004002 ORTHO05D004668 4.1e-134 482.3 403 63.3
vmacro20578 Vaccinium macrocarpon HOM05D004002 ORTHO05D004668 6.6e-132 474.9 406 61.8
CiPaw.03G246900 Carya illinoinensis HOM05D004002 ORTHO05D004668 4.3e-131 472.2 401 60.3
Sopen07g003960 Solanum pennellii HOM05D004002 ORTHO05D004668 7.3e-131 471.5 398 61.1
MD02G1028100 Malus domestica HOM05D004002 ORTHO05D004668 8.0e-130 468.0 403 62.5
TWI32G0682 Tripterygium wilfordii HOM05D004002 ORTHO05D004668 4.0e-129 465.7 405 61.2
Prupe.7G246700 Prunus persica HOM05D004002 ORTHO05D004668 2.0e-128 463.4 402 61.4
MD15G1169800 Malus domestica HOM05D004002 ORTHO05D004668 7.5e-128 461.5 403 61.5
Nitab4.5_0001776g0030 Nicotiana tabacum HOM05D004002 ORTHO05D004668 2.9e-127 459.5 404 59.7
TAR636G2372 Trochodendron aralioides HOM05D004002 ORTHO05D004668 2.9e-127 459.5 408 60.3
QL02p089511 Quercus lobata HOM05D004002 ORTHO05D004668 8.3e-127 458.0 407 60.4
Rhsim01G0066800 Rhododendron simsii HOM05D004002 ORTHO05D004668 1.9e-126 456.8 409 59.2
Nitab4.5_0000028g0120 Nicotiana tabacum HOM05D004002 ORTHO05D004668 4.1e-126 455.7 404 59.4
COL.COLO4_35123 Corchorus olitorius HOM05D004002 ORTHO05D004668 1.6e-125 453.8 418 56.9
ClCG06G011370 Citrullus lanatus HOM05D004002 ORTHO05D004668 4.6e-125 452.2 404 60.6
Gorai.001G043400 Gossypium raimondii HOM05D004002 ORTHO05D004668 1.7e-124 450.3 402 58.5
Atru.chr7.1118 Acer truncatum HOM05D004002 ORTHO05D004668 3.9e-124 449.1 397 58.2
Cc06_g08210 Coffea canephora HOM05D004002 ORTHO05D004668 6.6e-124 448.4 408 59.3
Gohir.D07G040800 Gossypium hirsutum HOM05D004002 ORTHO05D004668 1.1e-123 447.6 402 58.0
Potri.018G128400 Populus trichocarpa HOM05D004002 ORTHO05D004668 1.9e-123 446.8 410 59.8
Cfa003405 Carpinus fangiana HOM05D004002 ORTHO05D004668 5.6e-123 445.3 400 59.2
Thecc.09G129800 Theobroma cacao HOM05D004002 ORTHO05D004668 2.8e-122 443.0 417 55.9
THA.LOC104811026 Tarenaya hassleriana HOM05D004002 ORTHO05D004668 4.7e-122 442.2 403 60.0
Haze_25542 Corylus avellana HOM05D004002 ORTHO05D004668 6.2e-122 441.8 409 58.7
CAN.G138.14 Capsicum annuum HOM05D004002 ORTHO05D004668 1.1e-121 441.0 397 56.7
Duzib168G0398 Durio zibethinus HOM05D004002 ORTHO05D004668 1.1e-121 441.0 414 56.0
FvH4_1g02820 Fragaria vesca HOM05D004002 ORTHO05D004668 2.3e-121 439.9 403 60.3
FAN28G1420 Fragaria x ananassa HOM05D004002 ORTHO05D004668 2.3e-121 439.9 403 60.8
Manes.14G114600 Manihot esculenta HOM05D004002 ORTHO05D004668 2.3e-121 439.9 405 58.5
CANSAT11G1469 Cannabis sativa HOM05D004002 ORTHO05D004668 3.1e-121 439.5 405 58.5
Gohir.A07G036800 Gossypium hirsutum HOM05D004002 ORTHO05D004668 3.1e-121 439.5 402 57.2
FAN19G2815 Fragaria x ananassa HOM05D004002 ORTHO05D004668 4.0e-121 439.1 403 60.3
Lalb_Chr13g0301701 Lupinus albus HOM05D004002 ORTHO05D004668 8.9e-121 438.0 405 58.8
Lj4g0004437 Lotus japonicus HOM05D004002 ORTHO05D004668 1.5e-120 437.2 404 57.7
Duzib187G1937 Durio zibethinus HOM05D004002 ORTHO05D004668 2.6e-120 436.4 410 56.6
MELO3C010320.2 Cucumis melo HOM05D004002 ORTHO05D004668 3.4e-120 436.0 402 60.4
Sc18g0000460 Simmondsia chinensis HOM05D004002 ORTHO05D004668 3.4e-120 436.0 409 58.2
Ca_30460_v3 Cicer arietinum L. HOM05D004002 ORTHO05D004668 4.4e-120 435.6 404 58.7
AT3G33530 Arabidopsis thaliana HOM05D004002 ORTHO05D004668 1.7e-119 433.7 402 58.0
FAN23G1361 Fragaria x ananassa HOM05D004002 ORTHO05D004668 2.2e-119 433.3 402 60.0
SalBow1G7082 Salvia bowleyana HOM05D004002 ORTHO05D004668 2.2e-119 433.3 404 57.9
Thhalv10011188m.g Eutrema salsugineum HOM05D004002 ORTHO05D004668 2.9e-119 433.0 402 56.7
Ah.09g225140 Amaranthus hybridus HOM05D004002 ORTHO05D004668 4.9e-119 432.2 406 57.6
Ciclev10007259m.g Citrus clementina HOM05D004002 ORTHO05D004668 4.9e-119 432.2 406 56.4
RcHm_v2.0_Chr2g0087941 Rosa chinensis HOM05D004002 ORTHO05D004668 6.4e-119 431.8 416 57.9
Medtr4g114930 Medicago truncatula HOM05D004002 ORTHO05D004668 1.1e-118 431.0 401 59.9
Carub.0016s0010 Capsella rubella HOM05D004002 ORTHO05D004668 3.2e-118 429.5 399 57.6
Glyma.13G158400 Glycine max HOM05D004002 ORTHO05D004668 4.1e-118 429.1 406 58.1
Sp1g41730 Schrenkiella parvula HOM05D004002 ORTHO05D004668 4.1e-118 429.1 399 57.9
DCAR_010315 Daucus carota HOM05D004002 ORTHO05D004668 7.1e-118 428.3 399 56.6
Psat4g037880 Pisum sativum HOM05D004002 ORTHO05D004668 1.0e-116 424.5 404 58.2
AL5G20770 Arabidopsis lyrata HOM05D004002 ORTHO05D004668 1.7e-116 423.7 405 56.8
arahy.Tifrunner.gnm1.ann1.R22NLQ Arachis hypogaea HOM05D004002 ORTHO05D004668 3.0e-116 422.9 422 53.8
BcaB07g33169 Brassica carinata HOM05D004002 ORTHO05D004668 3.9e-116 422.5 406 56.7
BcaC08g43677 Brassica carinata HOM05D004002 ORTHO05D004668 5.1e-116 422.2 401 56.4
Aa31LG4G12760 Aethionema arabicum HOM05D004002 ORTHO05D004668 6.6e-116 421.8 405 56.3
C06p10960 Brassica napus HOM05D004002 ORTHO05D004668 1.1e-115 421.0 401 56.1
Sed0021658 Sechium edule HOM05D004002 ORTHO05D004668 1.1e-115 421.0 395 59.7
BolC6t36178H Brassica oleracea HOM05D004002 ORTHO05D004668 1.9e-115 420.2 401 56.4
Gohir.A08G238400 Gossypium hirsutum HOM05D004002 ORTHO05D004668 2.5e-115 419.9 410 54.4
BraSC56t46385Z Brassica rapa HOM05D004002 ORTHO05D004668 5.6e-115 418.7 403 55.3
EL10Ac8g18695 Beta vulgaris HOM05D004002 ORTHO05D004668 7.3e-115 418.3 417 56.8
MBI04_g29332_MAGBIO Magnolia biondii HOM05D004002 ORTHO05D004668 8.1e-114 414.8 379 57.3
arahy.Tifrunner.gnm1.ann1.S50ZLM Arachis hypogaea HOM05D004002 ORTHO05D004668 1.4e-113 414.1 435 52.4
Gohir.D08G259100 Gossypium hirsutum HOM05D004002 ORTHO05D004668 3.1e-113 412.9 410 54.1
VMungo1215G0854 Vigna mungo HOM05D004002 ORTHO05D004668 4.0e-113 412.5 406 55.4
Gorai.004G276600 Gossypium raimondii HOM05D004002 ORTHO05D004668 6.8e-113 411.8 410 54.1
Lalb_Chr12g0198051 Lupinus albus HOM05D004002 ORTHO05D004668 6.8e-113 411.8 410 54.4
AUR62013328 Chenopodium quinoa HOM05D004002 ORTHO05D004668 8.9e-113 411.4 413 55.4
Lj7A426T59 Lonicera japonica HOM05D004002 ORTHO05D004668 5.8e-112 408.7 334 62.0
Aqoxy7G02288 Aquilegia oxysepala HOM05D004002 ORTHO05D004668 1.9e-110 403.7 422 54.0
Hund26527 Selenicereus undatus HOM05D004002 ORTHO05D004668 5.4e-110 402.1 406 53.7
Nn2g12080 Nelumbo nucifera HOM05D004002 ORTHO05D004668 1.6e-109 400.6 399 53.6
FAN26G1964 Fragaria x ananassa HOM05D004002 ORTHO05D004668 7.8e-109 398.3 413 55.2
PSO017G4586 Papaver somniferum HOM05D004002 ORTHO05D004668 8.1e-106 388.3 417 51.6
PSO170G6007 Papaver somniferum HOM05D004002 ORTHO05D004668 2.4e-105 386.7 417 51.3
THA.LOC104808973 Tarenaya hassleriana HOM05D004002 ORTHO05D004668 5.8e-104 382.1 403 53.1
MSTRG.26413 Avicennia marina HOM05D004002 ORTHO05D004668 1.3e-103 380.9 352 56.8
Migut.K00437 Erythranthe guttata HOM05D004002 ORTHO05D004668 2.2e-103 380.2 403 51.9
SGA_v2.0_scaffold109G31044 Striga asiatica HOM05D004002 ORTHO05D004668 4.9e-103 379.0 326 58.9
Solyc07g008090.4 Solanum lycopersicum HOM05D004002 ORTHO05D004668 6.4e-103 378.6 336 58.9
Oeu012614.1 Olea europaea HOM05D004002 ORTHO05D004668 3.5e-101 372.9 411 51.3
Aa31LG5G9160 Aethionema arabicum HOM05D004002 ORTHO05D004668 6.0e-101 372.1 395 52.7
CDE03G0124 Ceratophyllum demersum HOM05D004002 ORTHO05D004668 3.9e-100 369.4 380 53.2
AT2G26610 Arabidopsis thaliana HOM05D004002 ORTHO05D004668 1.3e-98 364.4 391 52.2
CsaV3_1G030400 Cucumis sativus L. HOM05D004002 ORTHO05D004668 1.6e-98 364.0 408 54.2
GSVIVG01015557001 Vitis vinifera HOM05D004002 ORTHO05D004668 2.8e-98 363.2 347 55.0
AL4G19600 Arabidopsis lyrata HOM05D004002 ORTHO05D004668 9.0e-97 358.2 408 50.5
Carub.0004s0687 Capsella rubella HOM05D004002 ORTHO05D004668 1.2e-96 357.8 401 51.1
Ca_06930_v3 Cicer arietinum L. HOM05D004002 ORTHO05D004668 2.9e-95 353.2 325 58.8
A03p26850 Brassica napus HOM05D004002 ORTHO05D004668 3.8e-95 352.8 372 53.2
BraA03t11897Z Brassica rapa HOM05D004002 ORTHO05D004668 3.8e-95 352.8 372 53.2
BcaC01g04911 Brassica carinata HOM05D004002 ORTHO05D004668 6.4e-95 352.1 372 53.0
Sabra18G0109300 Salix brachista HOM05D004002 ORTHO05D004668 6.4e-95 352.1 339 56.9
C03p32190 Brassica napus HOM05D004002 ORTHO05D004668 3.2e-94 349.7 372 52.7
BolC3t15561H Brassica oleracea HOM05D004002 ORTHO05D004668 3.2e-94 349.7 372 52.7
HPP92_024596 Vanilla planifolia HOM05D004002 ORTHO05D004668 7.1e-94 348.6 395 49.9
TPR.G26484 Trifolium pratense HOM05D004002 ORTHO05D004668 2.7e-93 346.7 402 49.8
BcaB01g03030 Brassica carinata HOM05D004002 ORTHO05D004668 1.3e-92 344.4 371 51.5
Eucgr.C04259 Eucalyptus grandis HOM05D004002 ORTHO05D004668 5.6e-91 339.0 384 50.0
CsaV3_UNG026150 Cucumis sativus L. HOM05D004002 ORTHO05D004668 4.8e-90 335.9 408 51.5
Sp4g09400 Schrenkiella parvula HOM05D004002 ORTHO05D004668 1.1e-89 334.7 397 50.4
SHI03372 Sapria himalayana HOM05D004002 ORTHO05D004668 1.2e-88 331.3 332 54.8
Cpa.g.sc46.23 Carica papaya HOM05D004002 ORTHO05D004668 2.1e-85 320.5 421 48.5
Zm00001eb231770 Zea mays HOM05D004002 ORTHO05D004668 1.4e-81 307.8 394 45.7
ATR1120G180 Amborella trichopoda HOM05D004002 ORTHO05D004668 4.0e-81 306.2 359 46.5
Aqoxy7G02287 Aquilegia oxysepala HOM05D004002 ORTHO05D004668 7.6e-72 275.4 350 46.3
SEGI_36835 Sequoiadendron giganteum HOM05D004002 ORTHO05D004668 1.9e-70 270.8 328 47.0
Pp3c7_2590 Physcomitrium patens HOM05D004002 ORTHO05D004668 5.1e-68 262.7 362 42.0
Haze_13487 Corylus avellana HOM05D004002 ORTHO05D004668 2.2e-66 257.3 248 54.4
Os02g0136933 Oryza sativa ssp. japonica HOM05D004002 ORTHO05D004668 3.7e-66 256.5 333 45.6
Pp3c11_23650 Physcomitrium patens HOM05D004002 ORTHO05D004668 3.7e-66 256.5 363 41.0
AUR62011160 Chenopodium quinoa HOM05D004002 ORTHO05D004668 9.0e-65 251.9 284 50.4
Mapoly0041s0113 Marchantia polymorpha HOM05D004002 ORTHO05D004668 1.4e-60 238.0 389 38.8
FAN23G2019 Fragaria x ananassa HOM05D004002 ORTHO05D004668 8.8e-60 235.3 196 61.7
SEGI_17541 Sequoiadendron giganteum HOM05D004002 ORTHO05D004668 7.4e-59 232.3 250 47.2
Dinv41489 Davidia involucrata HOM05D004002 ORTHO05D004668 1.8e-57 227.6 262 53.4
unitig_748.g7159 Utricularia gibba HOM05D004002 ORTHO05D004668 6.1e-53 212.6 375 37.1
CDE04G2506 Ceratophyllum demersum HOM05D004002 ORTHO05D004668 1.5e-46 191.4 184 50.5
CBR_g41081 Chara braunii HOM05D004002 ORTHO05D004668 2.7e-37 160.6 413 29.1
Haze_18451 Corylus avellana HOM05D004002 ORTHO05D004668 1.2e-32 145.2 141 56.0
Dinv41488 Davidia involucrata HOM05D004002 ORTHO05D004668 7.2e-30 136.0 92 71.7
SMO347G0439 Selaginella moellendorffii HOM05D004002 ORTHO05D004668 3.3e-22 110.5 92 55.4
Peaxi162Scf00891g00220 Petunia axillaris HOM05D004002 ORTHO05D004668 1.7e-18 98.2 71 70.4
Sabra18G0109200 Salix brachista HOM05D004002 ORTHO05D004668 2.4e-17 94.4 71 70.4
Lj7C426G10 Lonicera japonica HOM05D004002 ORTHO05D004668 3.2e-17 94.0 72 73.6
Sed0028143 Sechium edule HOM05D004002 ORTHO05D004668 3.2e-17 94.0 73 67.1
Cre10.g449950 Chlamydomonas reinhardtii HOM05D004002 ORTHO05D004668 5.4e-17 93.2 396 24.7
Nn8g39500 Nelumbo nucifera HOM05D004002 ORTHO05D004668 3.5e-16 90.5 69 69.6
Ca_06931_v3 Cicer arietinum L. HOM05D004002 ORTHO05D004668 2.0e-11 74.7 72 56.9
SHI03370 Sapria himalayana HOM05D004002 ORTHO05D000023 4.6e-08 63.5 77 46.8


User provided reference genes

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