Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA240G1264 Erigeron canadensis HOM05D006098 ORTHO05D007470 4.9e-241 837.4 429 100.0
HanXRQChr13g0411151 Helianthus annuus HOM05D006098 ORTHO05D007470 3.5e-199 698.4 447 81.0
HanXRQChr03g0081041 Helianthus annuus HOM05D006098 ORTHO05D007470 1.1e-192 676.8 436 80.7
Lsat_1_v5_gn_5_57121 Lactuca sativa HOM05D006098 ORTHO05D007470 1.5e-189 666.4 461 76.6
ECA246G0847 Erigeron canadensis HOM05D006098 ORTHO05D007470 9.4e-176 620.5 423 75.7
Lsat_1_v5_gn_3_19721 Lactuca sativa HOM05D006098 ORTHO05D007470 2.3e-174 615.9 442 73.5
HanXRQChr17g0537231 Helianthus annuus HOM05D006098 ORTHO05D007470 1.4e-168 596.7 431 72.2
Dinv41811 Davidia involucrata HOM05D006098 ORTHO05D007470 4.7e-167 591.7 412 75.5
Actinidia14735 Actinidia chinensis HOM05D006098 ORTHO05D007470 3.5e-162 575.5 417 73.1
CSS0030969 Camellia sinensis var. sinensis HOM05D006098 ORTHO05D007470 1.5e-160 570.1 449 68.8
Nn1g09368 Nelumbo nucifera HOM05D006098 ORTHO05D007470 1.6e-159 566.6 399 74.2
Oeu057164.1 Olea europaea HOM05D006098 ORTHO05D007470 2.1e-159 566.2 401 72.8
GSVIVG01036872001 Vitis vinifera HOM05D006098 ORTHO05D007470 4.0e-158 562.0 418 72.5
DCAR_028369 Daucus carota HOM05D006098 ORTHO05D007470 6.7e-158 561.2 430 70.2
Actinidia18166 Actinidia chinensis HOM05D006098 ORTHO05D007470 1.5e-157 560.1 393 74.8
Cc08_g05440 Coffea canephora HOM05D006098 ORTHO05D007470 2.0e-157 559.7 424 68.6
COL.COLO4_10360 Corchorus olitorius HOM05D006098 ORTHO05D007470 3.3e-157 558.9 406 72.7
Peaxi162Scf00045g00071 Petunia axillaris HOM05D006098 ORTHO05D007470 5.7e-157 558.1 397 71.3
Rhsim11G0034900 Rhododendron simsii HOM05D006098 ORTHO05D007470 5.7e-157 558.1 418 71.1
Oeu042192.1 Olea europaea HOM05D006098 ORTHO05D007470 2.2e-156 556.2 439 67.7
Lj8A337G13 Lonicera japonica HOM05D006098 ORTHO05D007470 4.8e-156 555.1 357 78.4
Oeu042191.1 Olea europaea HOM05D006098 ORTHO05D007470 4.8e-156 555.1 439 67.7
Peaxi162Scf00053g00062 Petunia axillaris HOM05D006098 ORTHO05D007470 1.4e-155 553.5 398 71.9
CAN.G1026.8 Capsicum annuum HOM05D006098 ORTHO05D007470 1.8e-155 553.1 398 71.6
Nitab4.5_0011712g0010 Nicotiana tabacum HOM05D006098 ORTHO05D007470 2.4e-155 552.7 406 70.9
Duzib205G1615 Durio zibethinus HOM05D006098 ORTHO05D007470 3.1e-155 552.4 388 74.5
Thecc.03G318000 Theobroma cacao HOM05D006098 ORTHO05D007470 3.1e-155 552.4 385 74.5
TAR629G3250 Trochodendron aralioides HOM05D006098 ORTHO05D007470 4.1e-155 552.0 403 72.2
vmacro00080 Vaccinium macrocarpon HOM05D006098 ORTHO05D007470 7.0e-155 551.2 420 70.2
Gorai.008G220000 Gossypium raimondii HOM05D006098 ORTHO05D007470 2.0e-154 549.7 385 74.5
CAN.G884.9 Capsicum annuum HOM05D006098 ORTHO05D007470 3.5e-154 548.9 401 71.3
Solyc08g075520.4 Solanum lycopersicum HOM05D006098 ORTHO05D007470 3.5e-154 548.9 409 70.2
SalBow4G1396 Salvia bowleyana HOM05D006098 ORTHO05D007470 5.9e-154 548.1 400 71.0
Nitab4.5_0000985g0060 Nicotiana tabacum HOM05D006098 ORTHO05D007470 1.0e-153 547.4 406 69.7
PGSC0003DMG400018483 Solanum tuberosum HOM05D006098 ORTHO05D007470 1.7e-153 546.6 410 69.3
Nn7g37397 Nelumbo nucifera HOM05D006098 ORTHO05D007470 5.0e-153 545.0 404 72.3
Actinidia01257 Actinidia chinensis HOM05D006098 ORTHO05D007470 8.5e-153 544.3 417 70.7
Atru.chr8.2640 Acer truncatum HOM05D006098 ORTHO05D007470 1.9e-152 543.1 423 69.0
Manes.15G184300 Manihot esculenta HOM05D006098 ORTHO05D007470 2.1e-151 539.7 413 68.3
Nitab4.5_0000898g0120 Nicotiana tabacum HOM05D006098 ORTHO05D007470 4.7e-151 538.5 396 70.2
Sopen08g001580 Solanum pennellii HOM05D006098 ORTHO05D007470 8.0e-151 537.7 410 68.0
MSTRG.1762 Avicennia marina HOM05D006098 ORTHO05D007470 1.0e-150 537.3 395 70.4
Potri.003G033300 Populus trichocarpa HOM05D006098 ORTHO05D007470 1.4e-150 537.0 376 72.9
PGR031G3371 Punica granatum HOM05D006098 ORTHO05D007470 1.4e-150 537.0 404 70.8
Rhsim11G0035500 Rhododendron simsii HOM05D006098 ORTHO05D007470 3.0e-150 535.8 460 64.3
CAN.G884.14 Capsicum annuum HOM05D006098 ORTHO05D007470 5.2e-150 535.0 401 69.6
Cpa.g.sc71.63 Carica papaya HOM05D006098 ORTHO05D007470 5.2e-150 535.0 393 72.3
AUR62010477 Chenopodium quinoa HOM05D006098 ORTHO05D007470 1.2e-149 533.9 390 71.5
Sabra01G0135500 Salix brachista HOM05D006098 ORTHO05D007470 5.7e-149 531.6 380 72.4
EL10Ac5g12579 Beta vulgaris HOM05D006098 ORTHO05D007470 1.3e-148 530.4 390 70.8
Solyc08g005560.3 Solanum lycopersicum HOM05D006098 ORTHO05D007470 1.7e-148 530.0 410 67.3
Oeu046790.1 Olea europaea HOM05D006098 ORTHO05D007470 2.8e-148 529.3 407 67.3
Ah.12g058500 Amaranthus hybridus HOM05D006098 ORTHO05D007470 6.3e-148 528.1 424 67.0
Potri.001G193400 Populus trichocarpa HOM05D006098 ORTHO05D007470 8.3e-148 527.7 397 69.8
Nitab4.5_0001175g0140 Nicotiana tabacum HOM05D006098 ORTHO05D007470 1.1e-147 527.3 453 63.6
RcHm_v2.0_Chr6g0304491 Rosa chinensis HOM05D006098 ORTHO05D007470 1.8e-147 526.6 413 69.2
FvH4_2g37220 Fragaria vesca HOM05D006098 ORTHO05D007470 7.0e-147 524.6 409 68.0
Nitab4.5_0000030g0370 Nicotiana tabacum HOM05D006098 ORTHO05D007470 4.5e-146 521.9 421 66.0
Gorai.004G178500 Gossypium raimondii HOM05D006098 ORTHO05D007470 5.9e-146 521.5 392 71.2
Migut.A00537 Erythranthe guttata HOM05D006098 ORTHO05D007470 1.0e-145 520.8 391 68.8
Gohir.A08G150000 Gossypium hirsutum HOM05D006098 ORTHO05D007470 1.0e-145 520.8 391 70.8
FAN20G1855 Fragaria x ananassa HOM05D006098 ORTHO05D007470 1.3e-145 520.4 409 68.0
FAN27G2650 Fragaria x ananassa HOM05D006098 ORTHO05D007470 1.3e-145 520.4 413 66.8
MBI15_g33454_MAGBIO Magnolia biondii HOM05D006098 ORTHO05D007470 6.6e-145 518.1 373 72.7
THA.LOC104811082 Tarenaya hassleriana HOM05D006098 ORTHO05D007470 7.2e-144 514.6 406 67.0
AUR62030416 Chenopodium quinoa HOM05D006098 ORTHO05D007470 9.5e-144 514.2 422 65.2
FAN15G0890 Fragaria x ananassa HOM05D006098 ORTHO05D007470 8.0e-143 511.1 386 70.7
SGA_v2.0_scaffold111G31352 Striga asiatica HOM05D006098 ORTHO05D007470 1.8e-142 510.0 399 67.4
Dinv37422 Davidia involucrata HOM05D006098 ORTHO05D007470 2.0e-141 506.5 366 73.8
Actinidia32783 Actinidia chinensis HOM05D006098 ORTHO05D007470 4.4e-141 505.4 413 67.6
Duzib068G0239 Durio zibethinus HOM05D006098 ORTHO05D007470 1.8e-139 500.0 383 69.2
Gohir.D12G205100 Gossypium hirsutum HOM05D006098 ORTHO05D007470 2.0e-138 496.5 333 77.2
Gohir.A12G202400 Gossypium hirsutum HOM05D006098 ORTHO05D007470 3.5e-138 495.7 333 76.9
ATR0568G039 Amborella trichopoda HOM05D006098 ORTHO05D007470 1.2e-135 487.3 374 69.0
PSO541G2197 Papaver somniferum HOM05D006098 ORTHO05D007470 4.7e-135 485.3 432 62.7
PSO675G7908 Papaver somniferum HOM05D006098 ORTHO05D007470 6.1e-135 485.0 435 62.5
Sabra03G0019100 Salix brachista HOM05D006098 ORTHO05D007470 3.1e-134 482.6 465 57.6
CDE01G0744 Ceratophyllum demersum HOM05D006098 ORTHO05D007470 7.5e-133 478.0 377 66.0
SalBow8G2199 Salvia bowleyana HOM05D006098 ORTHO05D007470 1.3e-129 467.2 442 60.0
AT4G19160 Arabidopsis thaliana HOM05D006098 ORTHO05D007470 2.5e-128 463.0 422 60.0
unitig_37.g12121 Utricularia gibba HOM05D006098 ORTHO05D007470 4.0e-126 455.7 366 66.1
AL7G34930 Arabidopsis lyrata HOM05D006098 ORTHO05D007470 5.2e-126 455.3 439 57.4
Aa31LG6G1850 Aethionema arabicum HOM05D006098 ORTHO05D007470 1.1e-123 447.6 368 63.9
Carub.0007s2199 Capsella rubella HOM05D006098 ORTHO05D007470 1.4e-123 447.2 372 62.9
Peaxi162Scf00876g00435 Petunia axillaris HOM05D006098 ORTHO05D007470 3.9e-121 439.1 368 64.4
SEGI_14227 Sequoiadendron giganteum HOM05D006098 ORTHO05D007470 1.1e-120 437.6 366 62.3
Sp7g17860 Schrenkiella parvula HOM05D006098 ORTHO05D007470 8.9e-118 427.9 393 59.8
BraA01t01058Z Brassica rapa HOM05D006098 ORTHO05D007470 3.2e-115 419.5 435 56.1
CARHR226030 Cardamine hirsuta HOM05D006098 ORTHO05D007470 4.1e-115 419.1 408 58.3
BolC1t01289H Brassica oleracea HOM05D006098 ORTHO05D007470 6.0e-114 415.2 383 60.6
Thhalv10025127m.g Eutrema salsugineum HOM05D006098 ORTHO05D007470 1.0e-113 414.5 440 55.0
BcaC09g51434 Brassica carinata HOM05D006098 ORTHO05D007470 1.7e-113 413.7 438 55.7
A01p11120 Brassica napus HOM05D006098 ORTHO05D007470 8.6e-113 411.4 451 54.1
C01p13160 Brassica napus HOM05D006098 ORTHO05D007470 8.6e-113 411.4 439 55.8
BcaNung04007 Brassica carinata HOM05D006098 ORTHO05D007470 9.5e-112 407.9 377 59.7
PGSC0003DMG400016110 Solanum tuberosum HOM05D006098 ORTHO05D007470 2.1e-111 406.8 331 65.9
Sopen08g024170 Solanum pennellii HOM05D006098 ORTHO05D007470 6.2e-111 405.2 331 65.3
Manes.17G016300 Manihot esculenta HOM05D006098 ORTHO05D007470 2.1e-106 390.2 303 68.6
A08p14200 Brassica napus HOM05D006098 ORTHO05D007470 1.8e-102 377.1 406 55.9
BraA08t33414Z Brassica rapa HOM05D006098 ORTHO05D007470 1.8e-102 377.1 406 55.9
BcaC01g00601 Brassica carinata HOM05D006098 ORTHO05D007470 9.0e-102 374.8 385 55.8
C03p81800 Brassica napus HOM05D006098 ORTHO05D007470 3.4e-101 372.9 381 57.2
BolC3t20457H Brassica oleracea HOM05D006098 ORTHO05D007470 3.4e-101 372.9 381 57.2
BcaB04g18531 Brassica carinata HOM05D006098 ORTHO05D007470 9.3e-99 364.8 434 50.5
CAN.G947.35 Capsicum annuum HOM05D006098 ORTHO05D007470 9.0e-94 348.2 361 56.8
Gohir.D08G171101 Gossypium hirsutum HOM05D006098 ORTHO05D007470 6.0e-82 308.9 233 71.7
FAN27G0800 Fragaria x ananassa HOM05D006098 ORTHO05D007470 8.7e-81 305.1 239 69.9
MSTRG.13909 Avicennia marina HOM05D006098 ORTHO05D007470 1.9e-75 287.3 270 56.7
HanXRQChr05g0158621 Helianthus annuus HOM05D006098 ORTHO05D007470 1.2e-69 268.1 157 84.1
AagrBONN_evm.TU.Sc2ySwM_368.631 Anthoceros agrestis HOM05D006098 ORTHO05D007470 1.4e-65 254.6 359 40.1
SMO364G0549 Selaginella moellendorffii HOM05D006098 ORTHO05D007470 1.1e-56 224.9 377 40.1
Pp3c12_14620 Physcomitrium patens HOM05D006098 ORTHO05D007470 1.0e-52 211.8 416 36.1
FvH4_2g37180 Fragaria vesca HOM05D006098 ORTHO05D007470 2.7e-50 203.8 139 74.8
HanXRQChr09g0271561 Helianthus annuus HOM05D006098 ORTHO05D007470 1.3e-47 194.9 127 78.0
HanXRQChr11g0344761 Helianthus annuus HOM05D006098 ORTHO05D007470 2.8e-47 193.7 160 65.6
Rhsim11G0035700 Rhododendron simsii HOM05D006098 ORTHO05D007470 6.1e-42 176.0 402 36.1
Eucgr.D02551 Eucalyptus grandis HOM05D006098 ORTHO05D007470 1.2e-40 171.8 117 75.2
Oeu042198.1 Olea europaea HOM05D006098 ORTHO05D007470 2.0e-40 171.0 234 47.0
Oeu015533.1 Olea europaea HOM05D006098 ORTHO05D007470 7.5e-40 169.1 152 59.2
Hund11040 Selenicereus undatus HOM05D006098 ORTHO05D007470 4.8e-39 166.4 403 34.0
Eucgr.D02550 Eucalyptus grandis HOM05D006098 ORTHO05D007470 7.0e-30 136.0 122 57.4
Peaxi162Scf00527g00718 Petunia axillaris HOM05D006098 ORTHO05D007470 4.7e-26 123.2 199 39.2
HanXRQChr11g0344831 Helianthus annuus HOM05D006098 ORTHO05D007470 5.7e-24 116.3 78 75.6
Pp3c4_2130 Physcomitrium patens HOM05D006098 ORTHO05D007470 3.2e-22 110.5 363 29.8
RcHm_v2.0_Chr4g0402301 Rosa chinensis HOM05D006098 ORTHO05D007470 4.1e-22 110.2 98 60.2
Prupe.1G352900 Prunus persica HOM05D006098 ORTHO05D007470 2.0e-21 107.8 79 67.1
Sc11g0006450 Simmondsia chinensis HOM05D007414 ORTHO05D009482 1.1e-11 75.5 262 28.2
Cre14.g621850 Chlamydomonas reinhardtii HOM05D006098 ORTHO05D007470 1.2e-10 72.0 237 27.8
Ah.12g062800 Amaranthus hybridus HOM05D007414 ORTHO05D009482 8.1e-10 69.3 263 27.0
Aa31sc19G30 Aethionema arabicum HOM05D006098 ORTHO05D007470 2.3e-09 67.8 48 66.7
AUR62032647 Chenopodium quinoa HOM05D007414 ORTHO05D009482 3.1e-09 67.4 268 24.3
AUR62026859 Chenopodium quinoa HOM05D007414 ORTHO05D009482 4.0e-09 67.0 268 23.9
EL10Ac2g02800 Beta vulgaris HOM05D007414 ORTHO05D009482 6.8e-09 66.2 283 25.1
Cc02_g30210 Coffea canephora HOM05D007414 ORTHO05D009482 9.8e-08 62.4 269 26.4
PGSC0003DMG400018334 Solanum tuberosum HOM05D007414 ORTHO05D009482 9.8e-08 62.4 362 24.9
Manes.11G006000 Manihot esculenta HOM05D007414 ORTHO05D009482 1.3e-07 62.0 276 23.6
GSVIVG01013487001 Vitis vinifera HOM05D007414 ORTHO05D009482 1.7e-07 61.6 280 24.6
CAN.G1045.37 Capsicum annuum HOM05D007414 ORTHO05D009482 3.7e-07 60.5 361 23.3
Mapoly0007s0139 Marchantia polymorpha HOM05D007414 ORTHO05D009482 4.9e-07 60.1 411 24.6
Potri.001G027600 Populus trichocarpa HOM05D007414 ORTHO05D009482 4.9e-07 60.1 285 24.9
CSS0022385 Camellia sinensis var. sinensis HOM05D007414 ORTHO05D009482 6.4e-07 59.7 381 23.6
Hma1.2p1_1202F.1_g266840 Hydrangea macrophylla HOM05D007414 ORTHO05D009482 6.4e-07 59.7 275 24.7
Nitab4.5_0004955g0030 Nicotiana tabacum HOM05D007414 ORTHO05D009482 6.4e-07 59.7 362 24.6
Solyc01g096400.4 Solanum lycopersicum HOM05D007414 ORTHO05D009482 6.4e-07 59.7 362 23.8
Sopen01g040130 Solanum pennellii HOM05D007414 ORTHO05D009482 8.3e-07 59.3 362 23.8
Nitab4.5_0000307g0260 Nicotiana tabacum HOM05D007414 ORTHO05D009482 1.4e-06 58.5 274 26.6
FvH4_7g03070 Fragaria vesca HOM05D006097 ORTHO05D008538 2.4e-06 57.8 281 24.6
FAN06G2659 Fragaria x ananassa HOM05D007414 ORTHO05D009482 2.4e-06 57.8 281 24.6
COL.COLO4_20658 Corchorus olitorius HOM05D007414 ORTHO05D009482 4.1e-06 57.0 276 24.6
Duzib114G0511 Durio zibethinus HOM05D007414 ORTHO05D009482 4.1e-06 57.0 273 24.2
Atru.chr12.1333 Acer truncatum HOM05D007414 ORTHO05D009482 5.4e-06 56.6 280 23.2
arahy.Tifrunner.gnm1.ann1.XZAR1L Arachis hypogaea HOM05D007414 ORTHO05D009482 5.4e-06 56.6 239 24.7
Medtr3g014680 Medicago truncatula HOM05D007414 ORTHO05D009482 5.4e-06 56.6 283 23.7
PSO339G0457 Papaver somniferum HOM05D007414 ORTHO05D009482 5.4e-06 56.6 285 23.5
Ciclev10028543m.g Citrus clementina HOM05D007414 ORTHO05D009482 7.1e-06 56.2 281 25.3
RcHm_v2.0_Chr1g0324301 Rosa chinensis HOM05D007414 ORTHO05D009482 7.1e-06 56.2 281 23.8
Actinidia02265 Actinidia chinensis HOM05D007414 ORTHO05D009482 9.2e-06 55.8 279 23.7
AagrBONN_evm.TU.Sc2ySwM_362.1466 Anthoceros agrestis HOM05D007414 ORTHO05D009482 9.2e-06 55.8 410 22.4
Eucgr.G03234 Eucalyptus grandis HOM05D007414 ORTHO05D009482 9.2e-06 55.8 288 24.7
FAN03G2686 Fragaria x ananassa HOM05D007414 ORTHO05D009482 9.2e-06 55.8 281 24.2


User provided reference genes

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