Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA240G1164 Erigeron canadensis HOM05D002160 ORTHO05D002012 1.6e-28 129.0 71 100.0
HanXRQChr03g0070901 Helianthus annuus HOM05D002160 ORTHO05D002012 2.0e-10 68.9 72 69.4
Lj3g0021630 Lotus japonicus HOM05D002160 ORTHO05D002012 3.4e-10 68.2 68 72.1
CiPaw.10G145500 Carya illinoinensis HOM05D002160 ORTHO05D002012 9.9e-10 66.6 67 67.2
Solyc09g010800.5.1 Solanum lycopersicum HOM05D002160 ORTHO05D002012 2.2e-09 65.5 76 59.2
Sopen09g005530 Solanum pennellii HOM05D002160 ORTHO05D002012 2.2e-09 65.5 76 59.2
PGSC0003DMG402008909 Solanum tuberosum HOM05D002160 ORTHO05D002012 3.7e-09 64.7 76 59.2
A03p00650 Brassica napus HOM05D002160 ORTHO05D002012 6.4e-09 63.9 68 51.5
BraA03t09455Z Brassica rapa HOM05D002160 ORTHO05D002012 6.4e-09 63.9 68 51.5
THA.LOC104816271 Tarenaya hassleriana HOM05D002160 ORTHO05D002012 6.4e-09 63.9 68 66.2
BcaC06g31984 Brassica carinata HOM05D002160 ORTHO05D002012 8.3e-09 63.5 68 51.5
Sp6g40100 Schrenkiella parvula HOM05D002160 ORTHO05D002012 8.3e-09 63.5 68 50.0
QL07p048278 Quercus lobata HOM05D002160 ORTHO05D002012 1.1e-08 63.2 67 65.7
arahy.Tifrunner.gnm1.ann1.EU8JQM Arachis hypogaea HOM05D002160 ORTHO05D002012 1.4e-08 62.8 67 65.7
arahy.Tifrunner.gnm1.ann1.FFQQ4A Arachis hypogaea HOM05D002160 ORTHO05D002012 1.4e-08 62.8 67 65.7
C03p00920 Brassica napus HOM05D002160 ORTHO05D002012 1.4e-08 62.8 68 50.0
BolC3t12655H Brassica oleracea HOM05D002160 ORTHO05D002012 1.4e-08 62.8 68 50.0
Potri.006G085200 Populus trichocarpa HOM05D002160 ORTHO05D002012 1.4e-08 62.8 67 67.2
THA.LOC104823261 Tarenaya hassleriana HOM05D002160 ORTHO05D002012 1.9e-08 62.4 68 63.2
BcaNung02128 Brassica carinata HOM05D002160 ORTHO05D002012 2.4e-08 62.0 68 50.0
A10p33280 Brassica napus HOM05D002160 ORTHO05D002012 2.4e-08 62.0 68 50.0
C09p74190 Brassica napus HOM05D002160 ORTHO05D002012 2.4e-08 62.0 68 50.0
BolC9t60152H Brassica oleracea HOM05D002160 ORTHO05D002012 2.4e-08 62.0 68 50.0
Thhalv10015167m.g Eutrema salsugineum HOM05D002160 ORTHO05D002012 2.4e-08 62.0 68 50.0
MBI14_g20106_MAGBIO Magnolia biondii HOM05D002160 ORTHO05D002012 2.4e-08 62.0 66 62.1
QL07p048273 Quercus lobata HOM05D002160 ORTHO05D002012 2.4e-08 62.0 67 70.1
BcaB01g06159 Brassica carinata HOM05D002160 ORTHO05D002012 4.1e-08 61.2 68 50.0
Cc06_g02650 Coffea canephora HOM05D002160 ORTHO05D002012 4.1e-08 61.2 70 65.7
arahy.Tifrunner.gnm1.ann1.02J1VT Arachis hypogaea HOM05D002160 ORTHO05D002012 5.4e-08 60.8 70 61.4
arahy.Tifrunner.gnm1.ann1.8X9BUY Arachis hypogaea HOM05D002160 ORTHO05D002012 5.4e-08 60.8 70 61.4
Phvul.008G101800 Phaseolus vulgaris HOM05D002160 ORTHO05D002012 5.4e-08 60.8 67 67.2
Prupe.6G255100 Prunus persica HOM05D002160 ORTHO05D002012 5.4e-08 60.8 67 65.7
BcaC03g18434 Brassica carinata HOM05D002160 ORTHO05D002012 7.1e-08 60.5 68 50.0
Oeu036147.1 Olea europaea HOM05D002160 ORTHO05D002012 7.1e-08 60.5 66 60.6
CiPaw.09G192500 Carya illinoinensis HOM05D002160 ORTHO05D002012 9.2e-08 60.1 66 66.7
DCAR_014852 Daucus carota HOM05D002160 ORTHO05D002012 9.2e-08 60.1 68 55.9
Dinv37174 Davidia involucrata HOM05D002160 ORTHO05D002012 9.2e-08 60.1 67 67.2
Manes.08G079200 Manihot esculenta HOM05D002160 ORTHO05D002012 9.2e-08 60.1 67 64.2
Nitab4.5_0006455g0010 Nicotiana tabacum HOM05D002160 ORTHO05D002012 9.2e-08 60.1 76 61.8
GSVIVG01034174001 Vitis vinifera HOM05D002160 ORTHO05D002012 9.2e-08 60.1 66 63.6
CANSAT35G0429 Cannabis sativa HOM05D002160 ORTHO05D002012 1.2e-07 59.7 74 60.8
Duzib093G1046 Durio zibethinus HOM05D002160 ORTHO05D002012 1.2e-07 59.7 66 65.2
Thhalv10022195m.g Eutrema salsugineum HOM05D002160 ORTHO05D002012 1.2e-07 59.7 71 59.2
Actinidia26465 Actinidia chinensis HOM05D002160 ORTHO05D002012 1.6e-07 59.3 66 68.2
CARHR211040 Cardamine hirsuta HOM05D002160 ORTHO05D002012 1.6e-07 59.3 68 61.8
ECA236G5071 Erigeron canadensis HOM05D002160 ORTHO05D002012 1.6e-07 59.3 72 55.6
Glyma.07G132000 Glycine max HOM05D002160 ORTHO05D002012 1.6e-07 59.3 67 67.2
Rhsim05G0192600 Rhododendron simsii HOM05D002160 ORTHO05D002012 1.6e-07 59.3 66 65.2
BcaNung06991 Brassica carinata HOM05D002160 ORTHO05D002012 2.1e-07 58.9 68 47.1
C02p00440 Brassica napus HOM05D002160 ORTHO05D002012 2.1e-07 58.9 68 47.1
BolC2t06044H Brassica oleracea HOM05D002160 ORTHO05D002012 2.1e-07 58.9 68 47.1
BraA02t04716Z Brassica rapa HOM05D002160 ORTHO05D002012 2.1e-07 58.9 68 47.1
CiPaw.03G262000 Carya illinoinensis HOM05D002160 ORTHO05D002012 2.7e-07 58.5 69 53.6
A05p39590 Brassica napus HOM05D002160 ORTHO05D002012 3.5e-07 58.2 67 61.2
BraA05t22740Z Brassica rapa HOM05D002160 ORTHO05D002012 3.5e-07 58.2 67 61.2
CSS0042900 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 3.5e-07 58.2 66 65.2
CAN.G326.9 Capsicum annuum HOM05D002160 ORTHO05D002012 3.5e-07 58.2 76 57.9
CARHR083780 Cardamine hirsuta HOM05D002160 ORTHO05D002012 3.5e-07 58.2 67 61.2
Medtr7g061018 Medicago truncatula HOM05D002160 ORTHO05D002012 3.5e-07 58.2 68 63.2
PGSC0003DMG401008909 Solanum tuberosum HOM05D002160 ORTHO05D002012 3.5e-07 58.2 68 61.8
TAR369G0024 Trochodendron aralioides HOM05D002160 ORTHO05D002012 3.5e-07 58.2 67 68.7
VMungo1383G3367 Vigna mungo HOM05D002160 ORTHO05D002012 3.5e-07 58.2 67 67.2
Aa31LG1G22420 Aethionema arabicum HOM05D002160 ORTHO05D002012 4.6e-07 57.8 68 60.3
CSS0038374 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 4.6e-07 57.8 66 65.2
Gohir.D04G121400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 4.6e-07 57.8 66 62.1
Gorai.012G103800 Gossypium raimondii HOM05D002160 ORTHO05D002012 4.6e-07 57.8 66 62.1
MD12G1141500 Malus domestica HOM05D002160 ORTHO05D002012 4.6e-07 57.8 67 64.2
Manes.08G079262 Manihot esculenta HOM05D002160 ORTHO05D002012 4.6e-07 57.8 68 58.8
BcaC05g29516 Brassica carinata HOM05D002160 ORTHO05D002012 6.0e-07 57.4 67 61.2
C05p58620 Brassica napus HOM05D002160 ORTHO05D002012 6.0e-07 57.4 67 61.2
Atru.chr3.3902 Acer truncatum HOM05D002160 ORTHO05D002012 7.8e-07 57.0 67 62.7
PSO339G1859 Papaver somniferum HOM05D002160 ORTHO05D002012 7.8e-07 57.0 63 61.9
AT3G09390 Arabidopsis thaliana HOM05D002160 ORTHO05D002012 1.0e-06 56.6 68 61.8
BcaC05g29670 Brassica carinata HOM05D002160 ORTHO05D002012 1.0e-06 56.6 67 61.2
BolC5t34512H Brassica oleracea HOM05D002160 ORTHO05D002012 1.0e-06 56.6 67 61.2
COL.COLO4_14799 Corchorus olitorius HOM05D002160 ORTHO05D002012 1.0e-06 56.6 66 62.1
Gohir.A04G082400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 1.0e-06 56.6 66 62.1
Manes.08G079000 Manihot esculenta HOM05D002160 ORTHO05D002012 1.0e-06 56.6 67 65.7
Duzib106G1044 Durio zibethinus HOM05D002160 ORTHO05D002012 1.3e-06 56.2 66 63.6
Gohir.D01G211900 Gossypium hirsutum HOM05D002160 ORTHO05D002012 1.3e-06 56.2 70 58.6
BcaB03g11601 Brassica carinata HOM05D002160 ORTHO05D002012 1.7e-06 55.8 69 55.1
Sabra06G0064700 Salix brachista HOM05D002160 ORTHO05D002012 1.7e-06 55.8 66 63.6
THA.LOC104827014 Tarenaya hassleriana HOM05D002160 ORTHO05D002012 1.7e-06 55.8 66 63.6
Carub.0003s0850 Capsella rubella HOM05D002160 ORTHO05D002012 2.3e-06 55.5 68 60.3
Gorai.002G257700 Gossypium raimondii HOM05D002160 ORTHO05D002012 3.0e-06 55.1 66 59.1
MBI17_g25955_MAGBIO Magnolia biondii HOM05D002160 ORTHO05D002012 3.9e-06 54.7 64 46.9
TWI74G0912 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 5.1e-06 54.3 68 58.8
Sp3g07770 Schrenkiella parvula HOM05D002160 ORTHO05D002012 6.6e-06 53.9 67 58.2
TPR.G23304 Trifolium pratense HOM05D002160 ORTHO05D002012 8.6e-06 53.5 66 63.6


User provided reference genes

Program Settings