Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA240G1127 Erigeron canadensis HOM05D005115 ORTHO05D005703 3.4e-104 381.7 200 100.0
ECA240G3401 Erigeron canadensis HOM05D000003 ORTHO05D000004 2.7e-93 345.5 200 91.0
HanXRQChr03g0083441 Helianthus annuus HOM05D005115 ORTHO05D005703 2.9e-63 245.7 192 69.8
HanXRQChr13g0415351 Helianthus annuus HOM05D005115 ORTHO05D005703 3.3e-59 232.3 189 69.3
Lsat_1_v5_gn_6_83921 Lactuca sativa HOM05D005115 ORTHO05D005703 5.2e-52 208.4 204 61.8
Dinv37526 Davidia involucrata HOM05D005115 ORTHO05D005703 1.1e-49 200.7 189 60.8
Cc08_g16140 Coffea canephora HOM05D005115 ORTHO05D005703 1.5e-46 190.3 201 56.2
Dinv38826 Davidia involucrata HOM05D007126 ORTHO05D008974 1.9e-46 189.9 179 60.3
Hma1.2p1_0440F.1_g153350 Hydrangea macrophylla HOM05D005115 ORTHO05D005703 3.3e-46 189.1 180 60.0
Cfa011998 Carpinus fangiana HOM05D005115 ORTHO05D005703 2.1e-45 186.4 203 56.2
Gohir.D09G185000 Gossypium hirsutum HOM05D005115 ORTHO05D005703 2.8e-45 186.0 205 56.1
Rhsim02G0244500 Rhododendron simsii HOM05D005115 ORTHO05D005703 3.6e-45 185.7 202 55.4
Solyc08g008350.3 Solanum lycopersicum HOM05D005115 ORTHO05D005703 4.7e-45 185.3 198 59.1
Gohir.A09G190300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 6.1e-45 184.9 207 54.6
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 8.0e-45 184.5 199 57.3
Gorai.006G207500 Gossypium raimondii HOM05D005115 ORTHO05D005703 1.8e-44 183.3 206 54.9
Glyma.11G017800 Glycine max HOM05D005115 ORTHO05D005703 2.0e-43 179.9 208 53.4
Duzib205G0660 Durio zibethinus HOM05D005115 ORTHO05D005703 4.4e-43 178.7 203 53.7
Thecc.03G298900 Theobroma cacao HOM05D005115 ORTHO05D005703 1.3e-42 177.2 210 52.4
Peaxi162Scf00102g01844 Petunia axillaris HOM05D005115 ORTHO05D005703 1.7e-42 176.8 198 57.6
Glyma.01G225300 Glycine max HOM05D005115 ORTHO05D005703 2.8e-42 176.0 208 52.9
arahy.Tifrunner.gnm1.ann1.V4I9JE Arachis hypogaea HOM05D005115 ORTHO05D005703 3.7e-42 175.6 197 53.8
Potri.003G140700 Populus trichocarpa HOM05D005115 ORTHO05D005703 4.9e-42 175.3 206 54.4
Phvul.002G164100 Phaseolus vulgaris HOM05D005115 ORTHO05D005703 6.3e-42 174.9 208 52.9
Cpa.g.sc79.29 Carica papaya HOM05D005115 ORTHO05D005703 8.3e-42 174.5 202 54.5
arahy.Tifrunner.gnm1.ann1.M14U5A Arachis hypogaea HOM05D005115 ORTHO05D005703 1.4e-41 173.7 201 53.7
TWI15G1136 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 1.4e-41 173.7 200 51.5
TWI81G0084 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 1.8e-41 173.3 199 51.3
Duzib084G1297 Durio zibethinus HOM05D005115 ORTHO05D005703 3.1e-41 172.6 202 51.0
Prupe.5G120800 Prunus persica HOM05D005115 ORTHO05D005703 3.1e-41 172.6 207 54.6
Potri.001G090900 Populus trichocarpa HOM05D005115 ORTHO05D005703 1.6e-40 170.2 206 53.4
VMungo1215G1874 Vigna mungo HOM05D005115 ORTHO05D005703 1.6e-40 170.2 203 53.2
FAN18G1353 Fragaria x ananassa HOM05D005115 ORTHO05D005703 2.7e-40 169.5 203 55.7
CiPaw.11G120600 Carya illinoinensis HOM05D005115 ORTHO05D005703 3.5e-40 169.1 200 54.5
FvH4_5g04680 Fragaria vesca HOM05D005115 ORTHO05D005703 3.5e-40 169.1 203 55.7
FAN13G0546 Fragaria x ananassa HOM05D005115 ORTHO05D005703 3.5e-40 169.1 203 55.2
FAN13G3196 Fragaria x ananassa HOM05D005115 ORTHO05D005703 3.5e-40 169.1 203 55.2
TAR375G0477 Trochodendron aralioides HOM05D005115 ORTHO05D005703 3.5e-40 169.1 200 53.5
Nitab4.5_0002231g0060 Nicotiana tabacum HOM05D005115 ORTHO05D005703 4.5e-40 168.7 225 50.2
Carub.0006s2972 Capsella rubella HOM05D005115 ORTHO05D005703 5.9e-40 168.3 205 51.2
vmacro11350 Vaccinium macrocarpon HOM05D005115 ORTHO05D005703 5.9e-40 168.3 234 48.7
CsaV3_4G006640 Cucumis sativus L. HOM05D005115 ORTHO05D005703 1.0e-39 167.5 199 52.8
Gorai.007G026700 Gossypium raimondii HOM05D005115 ORTHO05D005703 1.0e-39 167.5 202 52.5
Duzib068G0330 Durio zibethinus HOM05D005115 ORTHO05D005703 1.3e-39 167.2 205 50.2
Gohir.D11G024900 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.3e-39 167.2 202 52.5
Gohir.A11G025300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 2.9e-39 166.0 202 52.0
Sabra01G0067300 Salix brachista HOM05D005115 ORTHO05D005703 2.9e-39 166.0 206 51.9
Atru.chr9.1972 Acer truncatum HOM05D005115 ORTHO05D005703 3.8e-39 165.6 184 54.9
Atru.chr9.1986 Acer truncatum HOM05D005115 ORTHO05D005703 3.8e-39 165.6 184 54.9
Actinidia22166 Actinidia chinensis HOM05D005115 ORTHO05D005703 3.8e-39 165.6 188 55.3
LjContig00312_ERROPOS870357g0004531 Lotus japonicus HOM05D005115 ORTHO05D005703 6.6e-39 164.9 205 50.2
PGR042G1877 Punica granatum HOM05D005115 ORTHO05D005703 1.1e-38 164.1 200 49.5
TAR375G0257 Trochodendron aralioides HOM05D005115 ORTHO05D005703 1.1e-38 164.1 203 52.7
Nitab4.5_0007367g0090 Nicotiana tabacum HOM05D005115 ORTHO05D005703 2.5e-38 162.9 225 48.9
Sc22g0004980 Simmondsia chinensis HOM05D005115 ORTHO05D005703 7.3e-38 161.4 196 53.1
CANSAT21G0870 Cannabis sativa HOM05D005115 ORTHO05D005703 8.0e-37 157.9 230 49.6
Oeu055028.2 Olea europaea HOM05D005115 ORTHO05D005703 8.0e-37 157.9 245 45.7
Thhalv10028955m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 1.0e-36 157.5 210 49.0
Manes.02G009400 Manihot esculenta HOM05D005115 ORTHO05D005703 1.4e-36 157.1 206 50.0
ClCG07G011580 Citrullus lanatus HOM05D005115 ORTHO05D005703 1.8e-36 156.8 202 51.0
Sed0016945 Sechium edule HOM05D005115 ORTHO05D005703 1.8e-36 156.8 202 51.0
CiPaw.12G082200 Carya illinoinensis HOM05D005115 ORTHO05D005703 2.3e-36 156.4 199 51.8
Medtr8g099425 Medicago truncatula HOM05D005115 ORTHO05D005703 3.0e-36 156.0 219 48.9
Aqoxy7G00093 Aquilegia oxysepala HOM05D005115 ORTHO05D005703 4.0e-36 155.6 192 53.1
Eucgr.D01748 Eucalyptus grandis HOM05D005115 ORTHO05D005703 6.8e-36 154.8 200 49.0
AT4G10970 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 3.4e-35 152.5 211 47.4
AUR62010847 Chenopodium quinoa HOM05D000034 ORTHO05D005703 3.4e-35 152.5 197 51.8
TPR.G3414 Trifolium pratense HOM05D005115 ORTHO05D005703 5.8e-35 151.8 210 47.6
AL6G45070 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 6.4e-34 148.3 215 47.4
SalBow6G1704 Salvia bowleyana HOM05D005115 ORTHO05D005703 8.3e-34 147.9 267 40.8
SalBow8G0540 Salvia bowleyana HOM05D005115 ORTHO05D005703 8.3e-34 147.9 267 40.8
PGR031G1480 Punica granatum HOM05D005115 ORTHO05D005703 1.1e-33 147.5 198 47.0
Haze_09072 Corylus avellana HOM05D005115 ORTHO05D005703 1.4e-33 147.1 301 38.2
CARHR255630 Cardamine hirsuta HOM05D005115 ORTHO05D005703 1.8e-33 146.7 217 47.9
Ca_17482_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 2.4e-33 146.4 213 46.0
Ca_17506_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 2.4e-33 146.4 213 46.0
RcHm_v2.0_Chr7g0194701 Rosa chinensis HOM05D005115 ORTHO05D005703 4.1e-33 145.6 189 51.9
Sp6g06500 Schrenkiella parvula HOM05D005115 ORTHO05D005703 2.7e-32 142.9 209 47.8
Hund14216 Selenicereus undatus HOM05D005115 ORTHO05D005703 3.5e-32 142.5 198 46.0
BcaC01g04648 Brassica carinata HOM05D005115 ORTHO05D005703 7.8e-32 141.4 207 47.8
Migut.A00633 Erythranthe guttata HOM05D005115 ORTHO05D005703 1.7e-31 140.2 204 47.1
CAN.G792.37 Capsicum annuum HOM05D005115 ORTHO05D005703 3.9e-31 139.0 125 61.6
PSO384G2123 Papaver somniferum HOM05D005115 ORTHO05D005703 8.6e-31 137.9 200 47.5
C03p35310 Brassica napus HOM05D005115 ORTHO05D005703 1.1e-30 137.5 216 46.3
BcaB01g02726 Brassica carinata HOM05D005115 ORTHO05D005703 2.5e-30 136.3 205 45.9
SGA_v2.0_scaffold144G35858 Striga asiatica HOM05D005474 ORTHO05D006551 2.5e-30 136.3 195 49.2
CSS0002161 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 4.3e-30 135.6 121 60.3
CSS0007380 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 4.3e-30 135.6 121 60.3
MBI06_g08472_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 5.6e-30 135.2 185 49.7
Sopen08g004230 Solanum pennellii HOM05D005115 ORTHO05D005703 7.3e-30 134.8 121 61.2
PGSC0003DMG400005793 Solanum tuberosum HOM05D005115 ORTHO05D005703 7.3e-30 134.8 121 62.0
unitig_0.g2839 Utricularia gibba HOM05D005115 ORTHO05D005703 2.1e-29 133.3 144 53.5
Sed0001802 Sechium edule HOM05D005115 ORTHO05D005703 3.6e-29 132.5 197 46.2
THA.LOC104815118 Tarenaya hassleriana HOM05D005115 ORTHO05D005703 1.1e-28 131.0 205 47.3
PSO135G0387 Papaver somniferum HOM05D005115 ORTHO05D005703 1.4e-28 130.6 200 46.5
CDE04G3646 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 3.1e-28 129.4 171 49.7
HPP92_002918 Vanilla planifolia HOM05D005115 ORTHO05D005703 4.0e-28 129.0 190 46.3
MSTRG.25681 Avicennia marina HOM05D005115 ORTHO05D005703 1.5e-27 127.1 110 62.7
EL10Ac5g12921 Beta vulgaris HOM05D005115 ORTHO05D005703 2.6e-27 126.3 254 40.2
Sabra03G0101600 Salix brachista HOM05D000906 ORTHO05D000713 4.4e-27 125.6 296 36.5
AUR62019846 Chenopodium quinoa HOM05D005115 ORTHO05D005703 2.2e-26 123.2 131 56.5
Hund11387 Selenicereus undatus HOM05D005115 ORTHO05D005703 2.2e-26 123.2 304 34.9
GSVIVG01019540001 Vitis vinifera HOM05D005115 ORTHO05D005703 2.2e-26 123.2 113 61.1
Aa31LG9G11140 Aethionema arabicum HOM05D005115 ORTHO05D005703 2.9e-26 122.9 261 37.9
TAR636G3146 Trochodendron aralioides HOM05D005115 ORTHO05D005703 2.9e-26 122.9 122 57.4
COL.COLO4_10710 Corchorus olitorius HOM05D005115 ORTHO05D005703 1.1e-25 120.9 110 60.0
A03p29200 Brassica napus HOM05D005115 ORTHO05D005703 7.0e-25 118.2 228 42.1
Thhalv10026287m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 9.2e-25 117.9 199 43.7
Lalb_Chr05g0211561 Lupinus albus HOM05D005115 ORTHO05D005703 1.2e-24 117.5 111 57.7
Psat7g026000 Pisum sativum HOM05D005115 ORTHO05D005703 3.5e-24 115.9 121 55.4
Sp7g21880 Schrenkiella parvula HOM05D005115 ORTHO05D005703 7.8e-24 114.8 202 42.1
CDE03G0211 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 2.3e-23 113.2 153 50.3
MELO3C016298.2 Cucumis melo HOM05D005115 ORTHO05D005703 2.3e-23 113.2 244 38.1
AT4G23910 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 5.0e-23 112.1 198 41.9
Carub.0007s1718 Capsella rubella HOM05D005115 ORTHO05D005703 6.6e-23 111.7 192 42.2
AL7G29420 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 8.6e-23 111.3 203 43.3
MD06G1108200 Malus domestica HOM05D005115 ORTHO05D005703 1.5e-22 110.5 97 67.0
MBI07_g07104_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 5.6e-22 108.6 179 42.5
Zm00001eb178470 Zea mays HOM05D005115 ORTHO05D005703 4.7e-21 105.5 190 42.6
SHI06967 Sapria himalayana HOM05D005115 ORTHO05D005703 1.8e-20 103.6 121 50.4
BolC3t15841H Brassica oleracea HOM05D005115 ORTHO05D005703 8.9e-20 101.3 125 52.0
A01p15220 Brassica napus HOM05D005115 ORTHO05D005703 2.0e-19 100.1 203 39.4
BcaNung01098 Brassica carinata HOM05D005115 ORTHO05D005703 2.2e-18 96.7 208 38.5
Zm00001eb042700 Zea mays HOM05D005115 ORTHO05D005703 4.9e-18 95.5 134 47.8
Os08g0374200 Oryza sativa ssp. japonica HOM05D005115 ORTHO05D005703 2.4e-17 93.2 113 50.4
SEGI_32593 Sequoiadendron giganteum HOM05D005115 ORTHO05D005703 4.1e-17 92.4 182 43.4
arahy.Tifrunner.gnm1.ann1.ULQ1VN Arachis hypogaea HOM05D005115 ORTHO05D005703 4.6e-16 89.0 69 65.2
Gohir.D12G237999 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.5e-14 84.0 110 44.5
Gohir.D12G238133 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.5e-14 84.0 110 44.5
Gorai.008G254900 Gossypium raimondii HOM05D005115 ORTHO05D005703 1.5e-14 84.0 110 44.5
CARHR231320 Cardamine hirsuta HOM05D005115 ORTHO05D005703 1.8e-12 77.0 128 44.5
C01p19150 Brassica napus HOM05D005115 ORTHO05D005703 3.1e-12 76.3 127 40.9
DCAR_029907 Daucus carota HOM05D005115 ORTHO05D005703 3.1e-12 76.3 74 59.5
BolC1t01841H Brassica oleracea HOM05D005115 ORTHO05D005703 1.2e-11 74.3 127 40.2
Lsat_1_v5_gn_1_118201 Lactuca sativa HOM05D009751 ORTHO05D005703 2.0e-11 73.6 126 39.7
ATR0602G161 Amborella trichopoda HOM05D005115 ORTHO05D005703 2.6e-11 73.2 114 45.6
BraA01t01460Z Brassica rapa HOM05D005115 ORTHO05D005703 3.4e-11 72.8 130 38.5
Lsat_1_v5_gn_8_68541 Lactuca sativa HOM05D005115 ORTHO05D018183 9.9e-11 71.2 69 56.5
BcaC09g50931 Brassica carinata HOM05D005115 ORTHO05D005703 2.2e-10 70.1 259 30.1
Lsat_1_v5_gn_5_53240 Lactuca sativa HOM05D004014 ORTHO05D018183 2.4e-09 66.6 70 55.7
FAN04G1053 Fragaria x ananassa HOM05D005115 ORTHO05D005703 1.6e-08 63.9 71 49.3


User provided reference genes

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