Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA240G1010 Erigeron canadensis HOM05D003895 ORTHO05D004723 0.0e+00 1474.5 721 100.0
HanXRQChr03g0083671 Helianthus annuus HOM05D003895 ORTHO05D004723 0.0e+00 1426.4 721 96.0
HanXRQChr06g0166321 Helianthus annuus HOM05D003895 ORTHO05D004723 0.0e+00 1382.5 722 92.9
Migut.E00651 Erythranthe guttata HOM05D003895 ORTHO05D004723 0.0e+00 1332.8 732 87.2
Lsat_1_v5_gn_6_83601 Lactuca sativa HOM05D003895 ORTHO05D004723 0.0e+00 1327.4 724 91.0
Oeu009988.1 Olea europaea HOM05D003895 ORTHO05D004723 0.0e+00 1324.7 730 86.7
MSTRG.13762 Avicennia marina HOM05D003895 ORTHO05D004723 0.0e+00 1322.8 732 86.6
CSS0003453 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 0.0e+00 1322.8 733 87.4
Cpa.g.sc15.11 Carica papaya HOM05D003895 ORTHO05D004723 0.0e+00 1320.8 738 86.0
Potri.001G087400 Populus trichocarpa HOM05D003895 ORTHO05D004723 0.0e+00 1318.1 732 87.7
Thecc.03G303200 Theobroma cacao HOM05D003895 ORTHO05D004723 0.0e+00 1317.0 734 86.4
Potri.003G143700 Populus trichocarpa HOM05D003895 ORTHO05D004723 0.0e+00 1316.6 732 87.0
CSS0024936 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 0.0e+00 1312.7 733 87.0
Actinidia04389 Actinidia chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1311.6 723 87.4
Cc05_g02370 Coffea canephora HOM05D003895 ORTHO05D004723 0.0e+00 1311.6 733 85.9
Manes.02G005900 Manihot esculenta HOM05D003895 ORTHO05D004723 0.0e+00 1310.8 732 86.2
Sabra01G0063700 Salix brachista HOM05D003895 ORTHO05D004723 0.0e+00 1308.9 729 87.2
Gorai.004G131300 Gossypium raimondii HOM05D003895 ORTHO05D004723 0.0e+00 1308.5 732 86.2
PGR042G2513 Punica granatum HOM05D003895 ORTHO05D004723 0.0e+00 1308.1 735 85.4
Ciclev10019024m.g Citrus clementina HOM05D003895 ORTHO05D004723 0.0e+00 1307.4 733 85.4
Duzib068G0704 Durio zibethinus HOM05D003895 ORTHO05D004723 0.0e+00 1305.4 734 86.0
Nn3g20296 Nelumbo nucifera HOM05D003895 ORTHO05D004723 0.0e+00 1304.3 721 86.5
Prupe.5G126000 Prunus persica HOM05D003895 ORTHO05D004723 0.0e+00 1304.3 735 85.6
Gohir.D08G124600 Gossypium hirsutum HOM05D003895 ORTHO05D004723 0.0e+00 1303.1 732 85.8
SalBow2G2362 Salvia bowleyana HOM05D003895 ORTHO05D004723 0.0e+00 1302.3 729 85.5
Rhsim07G0079800 Rhododendron simsii HOM05D003895 ORTHO05D004723 0.0e+00 1302.0 733 86.1
Ciclev10024991m.g Citrus clementina HOM05D003895 ORTHO05D004723 0.0e+00 1301.6 733 85.4
TWI60G1173 Tripterygium wilfordii HOM05D003895 ORTHO05D004723 0.0e+00 1301.6 732 86.3
Cc08_g16460 Coffea canephora HOM05D003895 ORTHO05D004723 0.0e+00 1301.2 727 85.6
Nitab4.5_0002439g0120 Nicotiana tabacum HOM05D003895 ORTHO05D004723 0.0e+00 1301.2 733 85.8
RcHm_v2.0_Chr7g0186311 Rosa chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1300.4 731 84.8
Solyc08g082830.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 0.0e+00 1300.4 733 85.3
PGSC0003DMG400012128 Solanum tuberosum HOM05D003895 ORTHO05D004723 0.0e+00 1299.6 733 85.1
COL.COLO4_10753 Corchorus olitorius HOM05D003895 ORTHO05D004723 0.0e+00 1298.5 728 86.1
MELO3C005756.2 Cucumis melo HOM05D003895 ORTHO05D004723 0.0e+00 1298.5 722 86.6
CANSAT54G0301 Cannabis sativa HOM05D003895 ORTHO05D004723 0.0e+00 1297.7 734 84.9
FvH4_5g11490 Fragaria vesca HOM05D003895 ORTHO05D004723 0.0e+00 1297.7 729 84.9
PSO170G0459 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1297.3 736 84.4
FAN08G0955 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1297.0 731 84.5
FAN18G2619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1296.6 729 84.8
FAN18G3428 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1296.6 729 84.8
FAN04G2440 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1295.4 731 84.5
TAR629G1064 Trochodendron aralioides HOM05D003895 ORTHO05D004723 0.0e+00 1295.0 735 84.8
Aqoxy2G01051 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 0.0e+00 1294.3 734 84.1
Cfa011961 Carpinus fangiana HOM05D003895 ORTHO05D004723 0.0e+00 1293.9 735 85.2
Sabra03G0104100 Salix brachista HOM05D003895 ORTHO05D004723 0.0e+00 1293.5 774 82.0
MD14G1134200 Malus domestica HOM05D003895 ORTHO05D004723 0.0e+00 1292.7 735 84.6
Nitab4.5_0002367g0210 Nicotiana tabacum HOM05D003895 ORTHO05D004723 0.0e+00 1292.7 725 86.1
CAN.G567.61 Capsicum annuum HOM05D003895 ORTHO05D004723 0.0e+00 1291.6 733 84.7
Lalb_Chr16g0390761 Lupinus albus HOM05D003895 ORTHO05D004723 0.0e+00 1291.6 733 84.9
DCAR_006502 Daucus carota HOM05D003895 ORTHO05D004723 0.0e+00 1290.0 733 83.5
Eucgr.E01025 Eucalyptus grandis HOM05D003895 ORTHO05D004723 0.0e+00 1290.0 729 85.2
Aa31LG2G1550 Aethionema arabicum HOM05D003895 ORTHO05D004723 0.0e+00 1288.5 726 84.7
QL02p029300 Quercus lobata HOM05D003895 ORTHO05D004723 0.0e+00 1288.1 732 84.7
MD06G1113100 Malus domestica HOM05D003895 ORTHO05D004723 0.0e+00 1287.7 735 84.5
Sopen08g031060 Solanum pennellii HOM05D003895 ORTHO05D004723 0.0e+00 1287.3 698 87.8
Phvul.002G328900 Phaseolus vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1286.6 733 84.3
CiPaw.11G115900 Carya illinoinensis HOM05D003895 ORTHO05D004723 0.0e+00 1282.3 734 83.9
Thhalv10011266m.g Eutrema salsugineum HOM05D003895 ORTHO05D004723 0.0e+00 1282.3 727 83.6
arahy.Tifrunner.gnm1.ann1.68E5M7 Arachis hypogaea HOM05D003895 ORTHO05D004723 0.0e+00 1281.2 731 84.3
Glyma.05G219500 Glycine max HOM05D003895 ORTHO05D004723 0.0e+00 1280.8 733 84.4
Lj4g0018300 Lotus japonicus HOM05D003895 ORTHO05D004723 0.0e+00 1280.8 735 83.8
Psat7g023560 Pisum sativum HOM05D003895 ORTHO05D004723 0.0e+00 1280.4 733 84.0
Ca_17453_v3 Cicer arietinum L. HOM05D003895 ORTHO05D004723 0.0e+00 1279.6 732 84.3
THA.LOC104823616 Tarenaya hassleriana HOM05D003895 ORTHO05D004723 0.0e+00 1279.6 724 85.1
Oeu059576.4 Olea europaea HOM05D003895 ORTHO05D004723 0.0e+00 1275.4 782 79.7
Sp1g40750 Schrenkiella parvula HOM05D003895 ORTHO05D004723 0.0e+00 1273.8 727 83.5
Hund14202 Selenicereus undatus HOM05D003895 ORTHO05D004723 0.0e+00 1273.1 734 83.4
Medtr8g099885 Medicago truncatula HOM05D003895 ORTHO05D004723 0.0e+00 1272.7 733 83.1
TPR.G3395 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1271.5 734 83.2
vmacro13870 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1270.8 775 80.5
Haze_09120 Corylus avellana HOM05D003895 ORTHO05D004723 0.0e+00 1270.0 750 82.9
arahy.Tifrunner.gnm1.ann1.M62N24 Arachis hypogaea HOM05D003895 ORTHO05D004723 0.0e+00 1268.4 726 83.6
BcaB07g33238 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1267.7 729 83.4
Lj4g0016220 Lotus japonicus HOM05D003895 ORTHO05D004723 0.0e+00 1267.7 735 82.6
Carub.0001s4358 Capsella rubella HOM05D003895 ORTHO05D004723 0.0e+00 1267.3 727 83.5
GSVIVG01019608001 Vitis vinifera HOM05D003895 ORTHO05D004723 0.0e+00 1266.5 726 83.7
A06p00400 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1264.2 730 82.9
TPR.G18245 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1264.2 734 83.1
AL1G63080 Arabidopsis lyrata HOM05D003895 ORTHO05D004723 0.0e+00 1263.8 727 82.9
AT1G55090 Arabidopsis thaliana HOM05D003895 ORTHO05D004723 0.0e+00 1263.1 727 82.8
BcaB04g17002 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1263.1 727 83.2
BraA06t23255Z Brassica rapa HOM05D003895 ORTHO05D004723 0.0e+00 1263.1 730 82.7
CARHR044680 Cardamine hirsuta HOM05D003895 ORTHO05D004723 0.0e+00 1263.1 728 82.8
vmacro10679 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1263.1 780 79.4
vmacro22441 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1263.1 780 79.4
BolC6t36080H Brassica oleracea HOM05D003895 ORTHO05D004723 0.0e+00 1261.1 729 82.4
BcaC01g01456 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1260.0 727 82.9
VMungo0251G3777 Vigna mungo HOM05D003895 ORTHO05D004723 0.0e+00 1258.8 730 83.4
A08p01020 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1258.0 727 82.5
C06p10070 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1254.6 729 82.2
BcaC08g43605 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1253.8 729 82.3
ClCG01G001820 Citrullus lanatus HOM05D003895 ORTHO05D004723 0.0e+00 1245.3 820 76.1
Lj2C160T5 Lonicera japonica HOM05D003895 ORTHO05D004723 0.0e+00 1236.5 733 82.9
Peaxi162Scf00074g00431 Petunia axillaris HOM05D003895 ORTHO05D004723 0.0e+00 1234.6 733 82.8
Psat7g023520 Pisum sativum HOM05D003895 ORTHO05D004723 0.0e+00 1227.2 725 81.0
Sc01g0010470 Simmondsia chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1226.5 664 87.8
EL10Ac5g12963 Beta vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1221.8 698 83.1
BraA08t32154Z Brassica rapa HOM05D003895 ORTHO05D004723 0.0e+00 1221.5 738 80.4
AUR62029097 Chenopodium quinoa HOM05D003895 ORTHO05D004723 0.0e+00 1220.7 735 80.1
BolC3t21537H Brassica oleracea HOM05D003895 ORTHO05D004723 0.0e+00 1220.3 739 80.4
C03p92220 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1219.5 739 80.2
PSO339G2482 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1219.1 734 79.4
AUR62015016 Chenopodium quinoa HOM05D003895 ORTHO05D004723 0.0e+00 1208.0 750 78.3
PSO017G1958 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1203.7 736 80.0
unitig_21.g20891 Utricularia gibba HOM05D003895 ORTHO05D004723 0.0e+00 1201.4 736 79.5
SGA_v2.0_scaffold295G47513 Striga asiatica HOM05D003895 ORTHO05D004723 0.0e+00 1197.6 728 79.7
Glyma.08G025800 Glycine max HOM05D003895 ORTHO05D004723 0.0e+00 1195.3 660 86.5
TPR.G3413 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1179.1 721 78.4
CsaV3_5G001970 Cucumis sativus L. HOM05D003895 ORTHO05D004723 0.0e+00 1175.6 657 86.5
Zm00001eb094700 Zea mays HOM05D003895 ORTHO05D004723 0.0e+00 1170.2 734 76.7
MBI02_g10555_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 0.0e+00 1151.0 742 75.1
HPP92_025338 Vanilla planifolia HOM05D003895 ORTHO05D004723 0.0e+00 1142.1 705 77.2
EL10Ac5g12472 Beta vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1137.1 699 78.4
Sed0021355 Sechium edule HOM05D003895 ORTHO05D004723 0.0e+00 1132.9 617 88.3
Hma1.2p1_1835F.1_g304665 Hydrangea macrophylla HOM05D003895 ORTHO05D004723 0.0e+00 1129.0 617 88.0
ATR1098G082 Amborella trichopoda HOM05D003895 ORTHO05D004723 0.0e+00 1109.7 735 73.7
Dinv34692 Davidia involucrata HOM05D003895 ORTHO05D004723 0.0e+00 1092.4 586 89.4
SEGI_31460 Sequoiadendron giganteum HOM05D003895 ORTHO05D004723 3.5e-311 1071.2 734 70.3
FAN13G0619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 7.0e-309 1063.5 731 72.4
Manes.02G005800 Manihot esculenta HOM05D003895 ORTHO05D004723 1.5e-303 1045.8 705 72.6
Ah.12g052950 Amaranthus hybridus HOM05D003895 ORTHO05D004723 4.9e-302 1040.8 752 70.9
AUR62019884 Chenopodium quinoa HOM05D003895 ORTHO05D004723 5.1e-283 977.6 700 70.3
SMO174G0028 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 8.1e-281 970.3 734 63.9
Mapoly0035s0052 Marchantia polymorpha HOM05D003895 ORTHO05D004723 2.9e-278 961.8 734 64.0
CBR_g19728 Chara braunii HOM05D003895 ORTHO05D004723 3.8e-278 961.4 715 64.9
Os07g0167100 Oryza sativa ssp. japonica HOM05D003895 ORTHO05D004723 6.2e-257 891.0 570 76.8
MCO17G006 Micromonas commoda HOM05D003895 ORTHO05D004723 8.2e-257 890.6 691 62.4
Pp3c17_21910 Physcomitrium patens HOM05D003895 ORTHO05D004723 1.7e-254 882.9 669 63.8
Gohir.A08G111660 Gossypium hirsutum HOM05D003895 ORTHO05D004723 5.0e-254 881.3 506 85.6
AagrBONN_evm.TU.Sc2ySwM_228.4970 Anthoceros agrestis HOM05D003895 ORTHO05D004723 1.9e-253 879.4 654 65.0
SMO358G0326 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 5.1e-251 871.3 695 61.2
Migut.E01630 Erythranthe guttata HOM05D003895 ORTHO05D004723 3.9e-235 818.5 503 80.3
PRCOL_00000896 Prasinoderma coloniale HOM05D003895 ORTHO05D004723 9.7e-234 813.9 717 56.1
Cre10.g435250 Chlamydomonas reinhardtii HOM05D003895 ORTHO05D004723 3.2e-229 798.9 783 53.4
Hma1.2p1_0077F.1_g039630 Hydrangea macrophylla HOM05D003895 ORTHO05D004723 1.3e-217 760.4 419 87.1
Cfa024512 Carpinus fangiana HOM05D003895 ORTHO05D004723 3.3e-205 719.2 710 52.7
MBI02_g43672_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 4.6e-183 645.6 423 74.7
PSO210G1536 Papaver somniferum HOM05D003895 ORTHO05D004723 1.7e-161 573.9 377 72.7
Aqoxy456s001 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 1.1e-152 544.7 297 88.6
ECA246G1101 Erigeron canadensis HOM05D003895 ORTHO05D004723 3.2e-152 543.1 486 61.5
MBI05_g40947_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 1.1e-144 518.1 357 71.1
AUR62007020 Chenopodium quinoa HOM05D003895 ORTHO05D004723 1.6e-143 514.2 317 80.1
Haze_09105 Corylus avellana HOM05D003895 ORTHO05D004723 1.1e-136 491.5 350 74.9
MBI15_g06349_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 9.7e-125 451.8 336 67.0
MBI05_g43497_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 8.5e-113 412.1 283 70.7
SalBow2G1745 Salvia bowleyana HOM05D003895 ORTHO05D004723 3.7e-108 396.7 315 63.8
Gohir.A08G111640 Gossypium hirsutum HOM05D003895 ORTHO05D004723 1.7e-92 344.7 183 84.7
MBI05_g40946_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 1.4e-91 341.7 220 73.2
Psat7g023400 Pisum sativum HOM05D003895 ORTHO05D004723 1.1e-83 315.5 418 47.1
arahy.Tifrunner.gnm1.ann1.RT27P1 Arachis hypogaea HOM05D003895 ORTHO05D004723 2.7e-74 284.3 354 48.0
BcaB04g17000 Brassica carinata HOM05D003895 ORTHO05D004723 3.0e-73 280.8 215 66.0
SalBow2G0791 Salvia bowleyana HOM05D003895 ORTHO05D004723 2.6e-69 267.7 168 70.8
BcaB04g16999 Brassica carinata HOM05D003895 ORTHO05D004723 1.2e-66 258.8 198 66.7
SalBow2G2695 Salvia bowleyana HOM05D003895 ORTHO05D004723 6.0e-66 256.5 216 61.1
BcaB04g17001 Brassica carinata HOM05D003895 ORTHO05D004723 3.6e-47 194.1 201 54.7
BcaB05g22068 Brassica carinata HOM05D003895 ORTHO05D004723 1.5e-45 188.7 131 66.4
AagrBONN_evm.TU.Sc2ySwM_228.4951 Anthoceros agrestis HOM05D003895 ORTHO05D004723 5.8e-45 186.8 219 43.4
BcaB01g00975 Brassica carinata HOM05D003895 ORTHO05D004723 5.4e-43 180.3 101 81.2
DCAR_006503 Daucus carota HOM05D001368 ORTHO05D003846 3.9e-41 174.1 209 49.8
BcaB01g02352 Brassica carinata HOM05D003895 ORTHO05D004723 3.9e-33 147.5 131 55.7
BcaC01g01457 Brassica carinata HOM05D003895 ORTHO05D004723 4.0e-30 137.5 141 53.9
Sopen06g027550 Solanum pennellii HOM05D003895 ORTHO05D004723 2.5e-27 128.3 161 49.1
Nitab4.5_0000974g0050 Nicotiana tabacum HOM05D003895 ORTHO05D285369 9.7e-24 116.3 101 58.4
CARHR106400 Cardamine hirsuta HOM05D003895 ORTHO05D004723 2.8e-23 114.8 181 38.7
MBI15_g06350_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D000018 3.1e-22 111.3 63 74.6
CARHR260480 Cardamine hirsuta HOM05D003895 ORTHO05D004723 5.3e-22 110.5 181 37.6
Lj4g0022111 Lotus japonicus HOM05D019175 ORTHO05D018974 4.5e-21 107.5 60 83.3
Solyc06g071240.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 2.2e-20 105.1 127 51.2
CAN.G628.62 Capsicum annuum HOM05D003895 ORTHO05D004723 1.2e-18 99.4 110 52.7
Nitab4.5_0001308g0060 Nicotiana tabacum HOM05D003895 ORTHO05D282403 1.6e-18 99.0 111 48.6
BcaB04g16998 Brassica carinata HOM05D003895 ORTHO05D004723 1.5e-16 92.4 51 82.4
BcaC01g01459 Brassica carinata HOM05D003895 ORTHO05D004723 1.3e-12 79.3 68 58.8
BcaC01g01463 Brassica carinata HOM05D003895 ORTHO05D004723 1.7e-12 79.0 67 59.7
Atru.chr9.1960 Acer truncatum HOM05D003895 ORTHO05D004723 4.2e-11 74.3 45 82.2
Nitab4.5_0004376g0060 Nicotiana tabacum HOM05D003895 ORTHO05D286866 7.2e-11 73.6 49 75.5
Glyma.17G110701 Glycine max HOM05D003895 ORTHO05D004723 3.3e-08 64.7 34 91.2
PGSC0003DMG400033059 Solanum tuberosum HOM05D003895 ORTHO05D004723 4.4e-08 64.3 40 72.5
Medtr3g108170 Medicago truncatula HOM05D003895 ORTHO05D260611 2.4e-06 58.5 107 41.1
Nitab4.5_0000050g0220 Nicotiana tabacum HOM05D003895 ORTHO05D285100 2.4e-06 58.5 43 74.4


User provided reference genes

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