Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA240G0809 Erigeron canadensis HOM05D006914 ORTHO05D008583 2.9e-51 204.9 103 100.0
Lsat_1_v5_gn_7_49520 Lactuca sativa HOM05D006914 ORTHO05D008583 3.1e-48 194.9 103 93.2
HanXRQChr03g0066101 Helianthus annuus HOM05D006914 ORTHO05D008583 5.2e-48 194.1 103 93.2
Nn8g40004 Nelumbo nucifera HOM05D006914 ORTHO05D008583 7.0e-45 183.7 103 88.3
CSS0049762 Camellia sinensis var. sinensis HOM05D006914 ORTHO05D008583 6.0e-44 180.6 103 87.4
Hund04582 Selenicereus undatus HOM05D000185 ORTHO05D000105 1.3e-43 179.5 103 85.4
Hma1.2p1_2085F.1_g313670 Hydrangea macrophylla HOM05D006914 ORTHO05D008583 3.9e-43 177.9 102 84.3
FAN23G1758 Fragaria x ananassa HOM05D006914 ORTHO05D008583 1.9e-42 175.6 103 85.4
Thecc.09G152600 Theobroma cacao HOM05D006914 ORTHO05D008583 1.9e-42 175.6 103 85.4
MD15G1149500 Malus domestica HOM05D006914 ORTHO05D008583 2.5e-42 175.3 103 85.4
Ciclev10009995m.g Citrus clementina HOM05D006914 ORTHO05D008583 3.3e-42 174.9 103 84.5
Nitab4.5_0001448g0020 Nicotiana tabacum HOM05D006914 ORTHO05D008583 3.3e-42 174.9 103 83.5
PGR102G2895 Punica granatum HOM05D006914 ORTHO05D008583 4.3e-42 174.5 103 83.5
GSVIVG01008452001 Vitis vinifera HOM05D006914 ORTHO05D008583 7.3e-42 173.7 104 85.6
FAN26G2758 Fragaria x ananassa HOM05D006914 ORTHO05D008583 9.5e-42 173.3 103 84.5
Potri.006G181400 Populus trichocarpa HOM05D006914 ORTHO05D008583 9.5e-42 173.3 103 85.4
Nitab4.5_0009003g0040 Nicotiana tabacum HOM05D006914 ORTHO05D008583 1.2e-41 172.9 103 81.6
RcHm_v2.0_Chr2g0085261 Rosa chinensis HOM05D006914 ORTHO05D008583 1.6e-41 172.6 103 84.5
Prupe.7G265800 Prunus persica HOM05D006914 ORTHO05D008583 2.1e-41 172.2 103 84.5
AUR62015440 Chenopodium quinoa HOM05D006914 ORTHO05D008583 2.8e-41 171.8 103 80.6
EL10Ac3g05865 Beta vulgaris HOM05D006914 ORTHO05D008583 3.6e-41 171.4 103 80.6
COL.COLO4_23940 Corchorus olitorius HOM05D006914 ORTHO05D008583 3.6e-41 171.4 103 84.5
Dinv41349 Davidia involucrata HOM05D006914 ORTHO05D008583 3.6e-41 171.4 97 87.6
Gohir.D08G256600 Gossypium hirsutum HOM05D006914 ORTHO05D008583 3.6e-41 171.4 103 81.6
Gorai.004G273700 Gossypium raimondii HOM05D006914 ORTHO05D008583 3.6e-41 171.4 103 81.6
Atru.chr7.325 Acer truncatum HOM05D006914 ORTHO05D008583 1.1e-40 169.9 103 81.6
AUR62002229 Chenopodium quinoa HOM05D006914 ORTHO05D008583 1.4e-40 169.5 103 78.6
MD02G1005200 Malus domestica HOM05D006914 ORTHO05D008583 1.4e-40 169.5 103 82.5
FvH4_1g00640 Fragaria vesca HOM05D006914 ORTHO05D008583 2.3e-40 168.7 103 82.5
Nitab4.5_0000233g0040 Nicotiana tabacum HOM05D006914 ORTHO05D008583 3.1e-40 168.3 101 83.2
Duzib187G0910 Durio zibethinus HOM05D006914 ORTHO05D008583 4.0e-40 167.9 103 81.6
Duzib150G1072 Durio zibethinus HOM05D006914 ORTHO05D008583 6.8e-40 167.2 103 81.6
CiPaw.15G165400 Carya illinoinensis HOM05D006914 ORTHO05D008583 8.9e-40 166.8 103 83.5
Ah.13g066550 Amaranthus hybridus HOM05D006914 ORTHO05D008583 2.0e-39 165.6 103 76.7
Cpa.g.sc46.184 Carica papaya HOM05D006914 ORTHO05D008583 2.0e-39 165.6 99 83.8
Cfa020795 Carpinus fangiana HOM05D006914 ORTHO05D008583 4.4e-39 164.5 103 78.6
QL02p093962 Quercus lobata HOM05D006914 ORTHO05D008583 4.4e-39 164.5 102 81.4
TPR.G25932 Trifolium pratense HOM05D006914 ORTHO05D008583 1.7e-38 162.5 103 77.7
TWI34G0278 Tripterygium wilfordii HOM05D006914 ORTHO05D008583 2.2e-38 162.2 97 83.5
TWI63G1652 Tripterygium wilfordii HOM05D006914 ORTHO05D008583 2.2e-38 162.2 103 81.6
Glyma.04G155300 Glycine max HOM05D006914 ORTHO05D008583 4.9e-38 161.0 103 77.7
CANSAT56G0295 Cannabis sativa HOM05D006914 ORTHO05D008583 6.4e-38 160.6 103 77.7
DCAR_019414 Daucus carota HOM05D006346 ORTHO05D007910 8.3e-38 160.2 101 77.2
Actinidia23563 Actinidia chinensis HOM05D006914 ORTHO05D008583 1.4e-37 159.5 93 84.9
MELO3C004120.2 Cucumis melo HOM05D006914 ORTHO05D008583 3.2e-37 158.3 103 75.7
Manes.14G142700 Manihot esculenta HOM05D006914 ORTHO05D008583 3.2e-37 158.3 95 81.1
Phvul.007G242700 Phaseolus vulgaris HOM05D006914 ORTHO05D008583 3.2e-37 158.3 103 75.7
TAR383G0505 Trochodendron aralioides HOM05D006914 ORTHO05D008583 4.1e-37 157.9 90 88.9
Lalb_Chr11g0072501 Lupinus albus HOM05D006914 ORTHO05D008583 5.4e-37 157.5 103 76.7
VMungo0720G1978 Vigna mungo HOM05D006914 ORTHO05D008583 5.4e-37 157.5 102 73.5
Actinidia28379 Actinidia chinensis HOM05D006914 ORTHO05D008583 7.0e-37 157.1 94 86.2
Aqoxy5G02159 Aquilegia oxysepala HOM05D006914 ORTHO05D008583 7.0e-37 157.1 98 80.6
Peaxi162Scf00156g01316 Petunia axillaris HOM05D006914 ORTHO05D008583 7.0e-37 157.1 103 76.7
ClCG02G014340 Citrullus lanatus HOM05D006914 ORTHO05D008583 1.2e-36 156.4 103 74.8
Medtr2g046160 Medicago truncatula HOM05D006914 ORTHO05D008583 2.1e-36 155.6 103 73.8
Sed0012601 Sechium edule HOM05D006914 ORTHO05D008583 2.7e-36 155.2 103 76.7
Glyma.06G225000 Glycine max HOM05D006914 ORTHO05D008583 4.6e-36 154.5 103 75.7
Cc06_g14590 Coffea canephora HOM05D006914 ORTHO05D008583 1.0e-35 153.3 103 77.7
Sed0026010 Sechium edule HOM05D006914 ORTHO05D008583 1.3e-35 152.9 103 76.7
MSTRG.10711 Avicennia marina HOM05D006914 ORTHO05D008583 1.7e-35 152.5 103 75.7
Ca_02367_v3 Cicer arietinum L. HOM05D006914 ORTHO05D008583 1.7e-35 152.5 97 76.3
Migut.K00305 Erythranthe guttata HOM05D006914 ORTHO05D008583 1.1e-34 149.8 98 76.5
Lj6g0027463 Lotus japonicus HOM05D006914 ORTHO05D008583 1.9e-34 149.1 103 70.9
CsaV3_2G007660 Cucumis sativus L. HOM05D006914 ORTHO05D008583 2.5e-34 148.7 93 77.4
PSO111G0010 Papaver somniferum HOM05D006914 ORTHO05D008583 4.3e-34 147.9 97 74.2
Oeu055276.1 Olea europaea HOM05D006914 ORTHO05D008583 3.6e-33 144.8 103 75.7
Oeu021334.1 Olea europaea HOM05D006914 ORTHO05D008583 8.1e-33 143.7 103 73.8
Sopen05g034470 Solanum pennellii HOM05D006914 ORTHO05D008583 8.1e-33 143.7 89 77.5
CDE05G0490 Ceratophyllum demersum HOM05D006914 ORTHO05D008583 1.8e-32 142.5 103 69.9
Psat1g017920 Pisum sativum HOM05D006914 ORTHO05D008583 3.1e-32 141.7 92 73.9
ATR0763G197 Amborella trichopoda HOM05D006914 ORTHO05D008583 4.0e-32 141.4 98 68.4
AL8G33910 Arabidopsis lyrata HOM05D006914 ORTHO05D008583 8.9e-32 140.2 90 76.7
AT5G57860 Arabidopsis thaliana HOM05D006914 ORTHO05D008583 8.9e-32 140.2 90 75.6
Sp6g19550 Schrenkiella parvula HOM05D006914 ORTHO05D008583 1.5e-31 139.4 90 75.6
Os03g0364000 Oryza sativa ssp. japonica HOM05D006914 ORTHO05D008583 2.6e-31 138.7 94 75.5
Carub.0008s1839 Capsella rubella HOM05D006914 ORTHO05D008583 5.8e-31 137.5 90 74.4
CARHR271600 Cardamine hirsuta HOM05D006914 ORTHO05D008583 5.8e-31 137.5 90 75.6
C02p13800 Brassica napus HOM05D006914 ORTHO05D008583 1.7e-30 136.0 90 73.3
BolC2t07499H Brassica oleracea HOM05D006914 ORTHO05D008583 1.7e-30 136.0 90 73.3
Thhalv10015128m.g Eutrema salsugineum HOM05D006914 ORTHO05D008583 1.7e-30 136.0 90 73.3
unitig_748.g7196 Utricularia gibba HOM05D006914 ORTHO05D008583 2.9e-30 135.2 89 76.4
Aa31LG3G13700 Aethionema arabicum HOM05D006914 ORTHO05D008583 8.3e-30 133.7 90 72.2
A02p08150 Brassica napus HOM05D006914 ORTHO05D008583 2.4e-29 132.1 90 72.2
TAR626G0439 Trochodendron aralioides HOM05D006914 ORTHO05D008583 4.1e-29 131.3 74 90.5
A03p12500 Brassica napus HOM05D006914 ORTHO05D008583 7.1e-29 130.6 90 70.0
BraA03t10565Z Brassica rapa HOM05D006914 ORTHO05D008583 7.1e-29 130.6 90 70.0
BolC3t13912H Brassica oleracea HOM05D006914 ORTHO05D008583 9.2e-29 130.2 90 70.0
HPP92_020604 Vanilla planifolia HOM05D006914 ORTHO05D008583 1.2e-28 129.8 90 70.0
Zm00001eb329210 Zea mays HOM05D006914 ORTHO05D008583 1.6e-28 129.4 93 66.7
C09p49750 Brassica napus HOM05D006914 ORTHO05D008583 3.5e-28 128.3 90 68.9
Rhsim03G0258700 Rhododendron simsii HOM05D000079 ORTHO05D000211 6.0e-28 127.5 74 87.8
Haze_19153 Corylus avellana HOM05D006914 ORTHO05D008583 9.5e-26 120.2 74 79.7
Eucgr.C02509 Eucalyptus grandis HOM05D006914 ORTHO05D008583 2.1e-25 119.0 74 79.7
CAN.G694.81 Capsicum annuum HOM05D006914 ORTHO05D008583 2.8e-25 118.6 79 75.9
PGSC0003DMG400023462 Solanum tuberosum HOM05D006914 ORTHO05D008583 2.8e-25 118.6 74 78.4
PSO782G4630 Papaver somniferum HOM05D006914 ORTHO05D008583 8.1e-25 117.1 97 60.8
vmacro06059 Vaccinium macrocarpon HOM05D000079 ORTHO05D000211 8.1e-25 117.1 74 78.4
arahy.Tifrunner.gnm1.ann1.6E7PQ4 Arachis hypogaea HOM05D006914 ORTHO05D008583 3.1e-24 115.2 74 77.0
arahy.Tifrunner.gnm1.ann1.S2MTQV Arachis hypogaea HOM05D006914 ORTHO05D008583 8.9e-24 113.6 74 75.7
BcaB05g22379 Brassica carinata HOM05D006914 ORTHO05D008583 8.9e-24 113.6 90 66.7
BraA02t05889Z Brassica rapa HOM05D006914 ORTHO05D008583 4.4e-23 111.3 79 68.4
SGA_v2.0_scaffold222G42803 Striga asiatica HOM05D006914 ORTHO05D008583 1.7e-22 109.4 74 77.0
Pp3c19_17380 Physcomitrium patens HOM05D006914 ORTHO05D008583 1.4e-21 106.3 98 58.2
Gohir.A08G236100 Gossypium hirsutum HOM05D006914 ORTHO05D008583 7.1e-21 104.0 62 79.0
AagrBONN_evm.TU.Sc2ySwM_362.2477 Anthoceros agrestis HOM05D006914 ORTHO05D008583 4.6e-20 101.3 90 62.2
Mapoly0004s0198 Marchantia polymorpha HOM05D006914 ORTHO05D008583 5.1e-19 97.8 76 64.5
SMO304G0019 Selaginella moellendorffii HOM05D006914 ORTHO05D008583 2.5e-18 95.5 73 64.4
Sc13g0007320 Simmondsia chinensis HOM05D006914 ORTHO05D008583 6.2e-17 90.9 62 75.8
CBR_g51779 Chara braunii HOM05D006914 ORTHO05D008583 2.4e-16 89.0 96 50.0
Haze_19154 Corylus avellana HOM05D002983 ORTHO05D003451 3.1e-16 88.6 62 75.8
Pp3c17_5060 Physcomitrium patens HOM05D006914 ORTHO05D008583 5.8e-15 84.3 97 51.5
Aa31LG1G14450 Aethionema arabicum HOM05D006914 ORTHO05D008583 4.9e-14 81.3 73 57.5
AagrBONN_evm.TU.Sc2ySwM_228.3148 Anthoceros agrestis HOM05D006914 ORTHO05D008583 8.4e-14 80.5 77 50.6
SHI02838 Sapria himalayana HOM05D006914 ORTHO05D008583 8.4e-14 80.5 87 50.6
Cre12.g554750 Chlamydomonas reinhardtii HOM05D006914 ORTHO05D008583 1.9e-13 79.3 84 48.8
BcaC04g19922 Brassica carinata HOM05D006914 ORTHO05D008583 2.1e-12 75.9 52 71.2
PRCOL_00002080 Prasinoderma coloniale HOM05D006914 ORTHO05D008583 1.7e-11 72.8 83 51.8


User provided reference genes

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