Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA240G0703 Erigeron canadensis HOM05D005311 ORTHO05D006160 8.6e-114 413.7 213 100.0
HanXRQChr15g0495651 Helianthus annuus HOM05D005311 ORTHO05D006160 1.8e-90 336.3 217 82.9
Lsat_1_v5_gn_9_113920 Lactuca sativa HOM05D005311 ORTHO05D006160 1.4e-87 326.6 217 81.1
Lsat_1_v5_gn_7_84560 Lactuca sativa HOM05D005311 ORTHO05D006160 7.9e-75 284.3 216 65.7
HanXRQChr03g0073011 Helianthus annuus HOM05D005311 ORTHO05D006160 7.4e-65 251.1 218 67.0
Solyc01g106790.3 Solanum lycopersicum HOM05D005311 ORTHO05D006160 5.9e-62 241.5 219 61.6
Rhsim11G0150000 Rhododendron simsii HOM05D005311 ORTHO05D006160 7.7e-62 241.1 219 62.1
CSS0009611 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 2.9e-61 239.2 220 62.3
Sopen01g049100 Solanum pennellii HOM05D005311 ORTHO05D006160 1.1e-60 237.3 221 62.0
ECA236G2995 Erigeron canadensis HOM05D000211 ORTHO05D002517 1.9e-60 236.5 175 68.0
PGSC0003DMG400025735 Solanum tuberosum HOM05D005311 ORTHO05D006160 9.4e-60 234.2 219 61.6
CAN.G606.76 Capsicum annuum HOM05D005311 ORTHO05D006160 3.6e-59 232.3 222 59.9
Nitab4.5_0009103g0020 Nicotiana tabacum HOM05D005311 ORTHO05D006160 6.1e-59 231.5 221 61.5
FvH4_2g03130 Fragaria vesca HOM05D005311 ORTHO05D006160 1.8e-58 229.9 219 60.3
CiPaw.05G021200 Carya illinoinensis HOM05D005311 ORTHO05D006160 2.3e-58 229.6 225 57.8
CANSAT25G3378 Cannabis sativa HOM05D005311 ORTHO05D006160 3.0e-58 229.2 224 59.4
Nitab4.5_0000772g0050 Nicotiana tabacum HOM05D005311 ORTHO05D006160 3.9e-58 228.8 221 61.1
DCAR_021939 Daucus carota HOM05D005311 ORTHO05D006160 8.8e-58 227.6 152 76.3
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 1.1e-57 227.3 172 69.2
Atru.chr5.2262 Acer truncatum HOM05D005311 ORTHO05D006160 1.5e-57 226.9 218 59.6
COL.COLO4_32478 Corchorus olitorius HOM05D005311 ORTHO05D006160 1.5e-57 226.9 224 58.9
TAR628G1269 Trochodendron aralioides HOM05D005311 ORTHO05D006160 1.5e-57 226.9 228 56.6
Actinidia00352 Actinidia chinensis HOM05D005311 ORTHO05D006160 2.0e-57 226.5 225 57.3
TAR376G1236 Trochodendron aralioides HOM05D000442 ORTHO05D006160 2.0e-57 226.5 219 58.4
QL11p029204 Quercus lobata HOM05D005311 ORTHO05D006160 2.6e-57 226.1 239 55.2
Potri.009G084800 Populus trichocarpa HOM05D005311 ORTHO05D006160 5.7e-57 224.9 222 58.1
Cc02_g20120 Coffea canephora HOM05D005311 ORTHO05D006160 7.4e-57 224.6 224 57.1
FAN24G0492 Fragaria x ananassa HOM05D005311 ORTHO05D006160 1.7e-56 223.4 221 58.4
MD05G1106900 Malus domestica HOM05D005311 ORTHO05D006160 1.7e-56 223.4 225 56.4
Peaxi162Scf00016g03127 Petunia axillaris HOM05D005311 ORTHO05D006160 2.2e-56 223.0 218 60.6
Lalb_Chr21g0307981 Lupinus albus HOM05D005311 ORTHO05D006160 2.8e-56 222.6 223 58.7
MSTRG.16668 Avicennia marina HOM05D005311 ORTHO05D006160 3.7e-56 222.2 231 57.6
Migut.B00474 Erythranthe guttata HOM05D005311 ORTHO05D006160 6.3e-56 221.5 225 59.6
MD10G1111900 Malus domestica HOM05D005311 ORTHO05D006160 8.2e-56 221.1 225 57.8
Lj9A337G44 Lonicera japonica HOM05D005311 ORTHO05D006160 1.4e-55 220.3 153 73.9
Phvul.007G047500 Phaseolus vulgaris HOM05D005311 ORTHO05D006160 2.4e-55 219.5 192 63.5
Gohir.D12G019000 Gossypium hirsutum HOM05D005311 ORTHO05D006160 3.1e-55 219.2 223 57.8
TWI14G0308 Tripterygium wilfordii HOM05D005311 ORTHO05D006160 3.1e-55 219.2 220 57.7
GSVIVG01037044001 Vitis vinifera HOM05D005311 ORTHO05D006160 3.1e-55 219.2 221 60.2
arahy.Tifrunner.gnm1.ann1.KVB0K0 Arachis hypogaea HOM05D005311 ORTHO05D006160 5.3e-55 218.4 232 56.9
FAN27G0024 Fragaria x ananassa HOM05D005311 ORTHO05D006160 7.0e-55 218.0 221 57.9
Gorai.008G019300 Gossypium raimondii HOM05D005311 ORTHO05D006160 9.1e-55 217.6 222 58.1
Ciclev10029272m.g Citrus clementina HOM05D005311 ORTHO05D006160 1.2e-54 217.2 216 60.2
Duzib052G0370 Durio zibethinus HOM05D005311 ORTHO05D006160 1.2e-54 217.2 221 57.5
Thecc.02G120600 Theobroma cacao HOM05D005311 ORTHO05D006160 1.2e-54 217.2 223 57.4
Actinidia02445 Actinidia chinensis HOM05D005311 ORTHO05D006160 1.6e-54 216.9 225 55.1
Gohir.A12G018400 Gossypium hirsutum HOM05D005311 ORTHO05D006160 1.6e-54 216.9 223 57.4
Manes.07G056400 Manihot esculenta HOM05D005311 ORTHO05D006160 1.6e-54 216.9 221 57.5
Ca_11020_v3 Cicer arietinum L. HOM05D005311 ORTHO05D006160 4.5e-54 215.3 218 59.2
FAN20G1889 Fragaria x ananassa HOM05D005311 ORTHO05D006160 7.7e-54 214.5 221 57.0
Medtr1g105970 Medicago truncatula HOM05D005311 ORTHO05D006160 1.0e-53 214.2 218 57.3
Lalb_Chr16g0376301 Lupinus albus HOM05D005311 ORTHO05D006160 1.3e-53 213.8 215 58.1
Glyma.10G255200 Glycine max HOM05D005311 ORTHO05D006160 1.7e-53 213.4 220 56.8
Eucgr.I02500 Eucalyptus grandis HOM05D005311 ORTHO05D006160 3.8e-53 212.2 168 66.7
Gohir.A03G180600 Gossypium hirsutum HOM05D005311 ORTHO05D006160 5.0e-53 211.8 222 55.9
TWI59G0049 Tripterygium wilfordii HOM05D005311 ORTHO05D006160 6.5e-53 211.5 213 55.4
FAN15G1540 Fragaria x ananassa HOM05D005311 ORTHO05D006160 1.1e-52 210.7 213 58.2
Gohir.D02G203104 Gossypium hirsutum HOM05D005311 ORTHO05D006160 1.1e-52 210.7 222 55.9
Lj5g0014269 Lotus japonicus HOM05D005311 ORTHO05D006160 1.1e-52 210.7 217 56.7
TAR625G0307 Trochodendron aralioides HOM05D005311 ORTHO05D006160 1.5e-52 210.3 228 54.4
Sc18g0007330 Simmondsia chinensis HOM05D005311 ORTHO05D006160 1.9e-52 209.9 216 56.0
RcHm_v2.0_Chr6g0248001 Rosa chinensis HOM05D005311 ORTHO05D006160 3.2e-52 209.1 248 50.8
SGA_v2.0_scaffold32G12981 Striga asiatica HOM05D005311 ORTHO05D006160 4.2e-52 208.8 220 56.4
Aqoxy5G01939 Aquilegia oxysepala HOM05D005311 ORTHO05D006160 5.5e-52 208.4 203 59.1
Sed0009957 Sechium edule HOM05D005311 ORTHO05D006160 5.5e-52 208.4 226 56.6
Gorai.005G229500 Gossypium raimondii HOM05D005311 ORTHO05D006160 7.2e-52 208.0 222 55.0
SalBow6G1857 Salvia bowleyana HOM05D005311 ORTHO05D006160 7.2e-52 208.0 222 55.0
Nn6g32054 Nelumbo nucifera HOM05D005311 ORTHO05D006160 9.4e-52 207.6 154 68.8
arahy.Tifrunner.gnm1.ann1.QK2693 Arachis hypogaea HOM05D005311 ORTHO05D006160 1.6e-51 206.8 159 67.9
VMungo0720G0066 Vigna mungo HOM05D005311 ORTHO05D006160 6.1e-51 204.9 154 70.8
Potri.001G289400 Populus trichocarpa HOM05D005311 ORTHO05D006160 1.0e-50 204.1 217 54.4
PSO210G6612 Papaver somniferum HOM05D005311 ORTHO05D006160 2.3e-50 203.0 222 53.6
vmacro01940 Vaccinium macrocarpon HOM05D000211 ORTHO05D002517 2.3e-50 203.0 179 62.0
THA.LOC104815219 Tarenaya hassleriana HOM05D005311 ORTHO05D006160 5.2e-50 201.8 216 54.6
AUR62027028 Chenopodium quinoa HOM05D005311 ORTHO05D006160 6.7e-50 201.4 206 57.3
AUR62030871 Chenopodium quinoa HOM05D005311 ORTHO05D006160 6.7e-50 201.4 210 56.2
MELO3C018026.2 Cucumis melo HOM05D005311 ORTHO05D006160 1.5e-49 200.3 224 54.5
Glyma.20G136100 Glycine max HOM05D005311 ORTHO05D006160 3.3e-49 199.1 151 69.5
Lalb_Chr02g0144871 Lupinus albus HOM05D005311 ORTHO05D006160 7.5e-49 198.0 222 52.3
Ah.01g024570 Amaranthus hybridus HOM05D005311 ORTHO05D006160 9.7e-49 197.6 219 52.5
ATR0767G087 Amborella trichopoda HOM05D005311 ORTHO05D006160 9.7e-49 197.6 219 53.4
Hund00418 Selenicereus undatus HOM05D005311 ORTHO05D006160 1.7e-48 196.8 217 53.5
PSO447G0012 Papaver somniferum HOM05D005311 ORTHO05D006160 3.7e-48 195.7 218 54.6
Lj5A221T62 Lonicera japonica HOM05D005311 ORTHO05D006160 8.2e-48 194.5 145 69.7
Oeu037294.1 Olea europaea HOM05D005311 ORTHO05D006160 1.2e-46 190.7 144 69.4
CARHR040130 Cardamine hirsuta HOM05D005311 ORTHO05D006160 1.6e-46 190.3 159 62.9
Cpa.g.sc106.28 Carica papaya HOM05D005311 ORTHO05D006160 2.7e-46 189.5 276 46.0
Sabra16G0181000 Salix brachista HOM05D002370 ORTHO05D003878 4.5e-46 188.7 154 64.3
AL1G57590 Arabidopsis lyrata HOM05D005311 ORTHO05D006160 1.3e-45 187.2 157 61.8
AT1G50020 Arabidopsis thaliana HOM05D005311 ORTHO05D006160 3.8e-45 185.7 214 53.7
ClCG10G010010 Citrullus lanatus HOM05D005311 ORTHO05D006160 8.5e-45 184.5 155 63.9
A06p03410 Brassica napus HOM05D005311 ORTHO05D006160 1.9e-44 183.3 216 49.5
Carub.0001s3920 Capsella rubella HOM05D005311 ORTHO05D006160 2.5e-44 183.0 214 51.4
Thhalv10011774m.g Eutrema salsugineum HOM05D005311 ORTHO05D006160 2.5e-44 183.0 159 61.6
Sp1g36880 Schrenkiella parvula HOM05D005311 ORTHO05D006160 2.5e-44 183.0 213 52.1
BraA06t23549Z Brassica rapa HOM05D005311 ORTHO05D006160 3.2e-44 182.6 216 50.0
C06p04800 Brassica napus HOM05D005311 ORTHO05D006160 7.2e-44 181.4 216 49.5
BcaC08g43180 Brassica carinata HOM05D005311 ORTHO05D006160 9.4e-44 181.0 215 50.2
BolC6t35609H Brassica oleracea HOM05D005311 ORTHO05D006160 9.4e-44 181.0 215 50.2
BcaB07g33454 Brassica carinata HOM05D005311 ORTHO05D006160 1.6e-43 180.3 216 50.0
CsaV3_4G000050 Cucumis sativus L. HOM05D005311 ORTHO05D006160 1.6e-43 180.3 152 62.5
A08p03390 Brassica napus HOM05D005311 ORTHO05D006160 3.6e-43 179.1 217 50.2
BolC3t21257H Brassica oleracea HOM05D005311 ORTHO05D006160 8.0e-43 177.9 190 54.2
Aa31LG10G4090 Aethionema arabicum HOM05D002370 ORTHO05D003878 2.3e-42 176.4 154 62.3
BraA08t32371Z Brassica rapa HOM05D005311 ORTHO05D006160 2.3e-42 176.4 217 49.3
C03p89430 Brassica napus HOM05D005311 ORTHO05D006160 6.8e-42 174.9 158 59.5
Prupe.8G151000 Prunus persica HOM05D005311 ORTHO05D006160 9.8e-41 171.0 182 57.7
unitig_61.g26039 Utricularia gibba HOM05D005311 ORTHO05D006160 3.7e-40 169.1 164 56.1
EL10Ac9g22172 Beta vulgaris HOM05D005311 ORTHO05D006160 7.7e-38 161.4 177 55.4
GSVIVG01009264001 Vitis vinifera HOM05D005311 ORTHO05D006160 7.7e-38 161.4 175 49.1
CDE02G2678 Ceratophyllum demersum HOM05D005427 ORTHO05D006160 2.2e-37 159.8 184 48.4
BcaB04g17278 Brassica carinata HOM05D005311 ORTHO05D006160 1.1e-36 157.5 144 59.7
TPR.G21150 Trifolium pratense HOM05D005311 ORTHO05D006160 1.5e-36 157.1 130 67.7
Dinv09534 Davidia involucrata HOM05D000211 ORTHO05D002517 2.7e-35 152.9 188 50.5
Sabra09G0065400 Salix brachista HOM05D000308 ORTHO05D002517 8.0e-35 151.4 111 73.9
arahy.Tifrunner.gnm1.ann1.YXS8EF Arachis hypogaea HOM05D005311 ORTHO05D006160 2.6e-33 146.4 145 57.2
Duzib132G0391 Durio zibethinus HOM05D005311 ORTHO05D006160 3.4e-33 146.0 223 45.7
Psat6g210680 Pisum sativum HOM05D005311 ORTHO05D006160 9.8e-33 144.4 130 63.8
Zm00001eb201730 Zea mays HOM05D005311 ORTHO05D006160 2.2e-32 143.3 166 51.2
unitig_60.g25463 Utricularia gibba HOM05D005311 ORTHO05D006160 1.0e-29 134.4 149 53.7
PGR142G3492 Punica granatum HOM05D005311 ORTHO05D006160 1.1e-28 131.0 217 41.9
Os11g0549900 Oryza sativa ssp. japonica HOM05D005311 ORTHO05D006160 2.5e-28 129.8 149 50.3
Oeu025305.1 Olea europaea HOM05D005311 ORTHO05D006160 4.3e-28 129.0 111 65.8
Oeu037691.1 Olea europaea HOM05D005311 ORTHO05D006160 1.2e-27 127.5 95 71.6
TAR365G0893 Trochodendron aralioides HOM05D005311 ORTHO05D006160 8.0e-27 124.8 150 51.3
CSS0025480 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 4.0e-26 122.5 151 55.0
SMO118G0105 Selaginella moellendorffii HOM05D005311 ORTHO05D006160 6.8e-26 121.7 182 41.2
CDE04G0288 Ceratophyllum demersum HOM05D005311 ORTHO05D006160 2.9e-24 116.3 85 63.5
arahy.Tifrunner.gnm1.ann1.YSC4AN Arachis hypogaea HOM05D005311 ORTHO05D006160 6.4e-24 115.2 145 48.3
Pp3c9_20640 Physcomitrium patens HOM05D005311 ORTHO05D006160 1.6e-22 110.5 155 43.9
vmacro22259 Vaccinium macrocarpon HOM05D005311 ORTHO05D006160 1.6e-22 110.5 158 50.0
Haze_10287 Corylus avellana HOM05D005311 ORTHO05D006160 1.3e-21 107.5 79 74.7
SGA_v2.0_scaffold225G43064 Striga asiatica HOM05D005311 ORTHO05D006160 1.3e-21 107.5 142 53.5
Mapoly0159s0003 Marchantia polymorpha HOM05D005311 ORTHO05D006160 2.3e-21 106.7 170 41.2
Cfa004693 Carpinus fangiana HOM05D005311 ORTHO05D006160 1.1e-20 104.4 78 75.6
arahy.Tifrunner.gnm1.ann1.6ZTX4G Arachis hypogaea HOM05D005311 ORTHO05D006160 3.3e-20 102.8 142 45.8
Rhsim05G0093200 Rhododendron simsii HOM05D005311 ORTHO05D006160 1.2e-19 100.9 199 40.2
AagrBONN_evm.TU.Sc2ySwM_340.346 Anthoceros agrestis HOM05D005311 ORTHO05D006160 5.2e-18 95.5 167 38.9
CDE02G0336 Ceratophyllum demersum HOM05D005311 ORTHO05D006160 3.4e-17 92.8 148 45.3
Dinv44912 Davidia involucrata HOM05D005311 ORTHO05D006160 2.2e-16 90.1 96 58.3
Dinv16067 Davidia involucrata HOM05D005311 ORTHO05D006160 2.7e-14 83.2 118 49.2
HPP92_006035 Vanilla planifolia HOM05D005311 ORTHO05D006160 4.6e-14 82.4 162 42.0
arahy.Tifrunner.gnm1.ann1.TC5M0Q Arachis hypogaea HOM05D005311 ORTHO05D006160 2.5e-12 76.6 130 39.2
CARHR113150 Cardamine hirsuta HOM05D005311 ORTHO05D006160 2.5e-12 76.6 51 68.6
arahy.Tifrunner.gnm1.ann1.HG6PX3 Arachis hypogaea HOM05D005311 ORTHO05D006160 4.0e-10 69.3 136 37.5
Cre14.g614000 Chlamydomonas reinhardtii HOM05D005311 ORTHO05D006160 4.0e-10 69.3 88 44.3
CBR_g12748 Chara braunii HOM05D000019 ORTHO05D000048 5.2e-10 68.9 75 46.7
SEGI_31449 Sequoiadendron giganteum HOM05D005311 ORTHO05D006160 1.7e-08 63.9 103 48.5
CSS0010436 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 2.1e-06 57.0 42 64.3
arahy.Tifrunner.gnm1.ann1.HI4HR4 Arachis hypogaea HOM05D000211 ORTHO05D002517 6.0e-06 55.5 74 43.2


User provided reference genes

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