Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA240G0419 Erigeron canadensis HOM05D005332 ORTHO05D006861 2.8e-180 635.2 321 100.0
Lsat_1_v5_gn_3_136741 Lactuca sativa HOM05D005332 ORTHO05D006861 5.4e-144 514.6 316 82.6
HanXRQChr03g0093511 Helianthus annuus HOM05D005332 ORTHO05D006861 5.1e-142 508.1 314 80.6
Sopen01g037990 Solanum pennellii HOM05D005332 ORTHO05D006861 1.1e-128 463.8 316 71.5
Nitab4.5_0001251g0070 Nicotiana tabacum HOM05D005332 ORTHO05D006861 2.4e-128 462.6 313 72.2
Solyc01g094190.3 Solanum lycopersicum HOM05D005332 ORTHO05D006861 5.4e-128 461.5 316 71.2
PGSC0003DMG402000019 Solanum tuberosum HOM05D005332 ORTHO05D006861 2.1e-127 459.5 316 70.9
Lj9A579T30 Lonicera japonica HOM05D005332 ORTHO05D006861 4.6e-127 458.4 321 70.1
Actinidia09995 Actinidia chinensis HOM05D000602 ORTHO05D002573 7.9e-127 457.6 314 70.1
vmacro13319 Vaccinium macrocarpon HOM05D005332 ORTHO05D006861 3.0e-126 455.7 314 70.7
CSS0028869 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 1.1e-125 453.8 320 69.7
CAN.G78.17 Capsicum annuum HOM05D005332 ORTHO05D006861 1.9e-125 453.0 316 69.9
Haze_15198 Corylus avellana HOM05D005332 ORTHO05D006861 2.5e-125 452.6 312 71.2
CSS0045846 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 3.3e-125 452.2 320 69.4
FvH4_7g13560 Fragaria vesca HOM05D005332 ORTHO05D006861 2.1e-124 449.5 315 70.5
Cc02_g37460 Coffea canephora HOM05D005332 ORTHO05D006861 2.8e-124 449.1 319 68.7
TAR374G0257 Trochodendron aralioides HOM05D005332 ORTHO05D006861 8.1e-124 447.6 313 70.9
FAN06G1647 Fragaria x ananassa HOM05D005332 ORTHO05D006861 1.4e-123 446.8 315 70.2
FAN06G0948 Fragaria x ananassa HOM05D005332 ORTHO05D006861 1.8e-123 446.4 315 69.8
Manes.01G260300 Manihot esculenta HOM05D005332 ORTHO05D006861 1.8e-123 446.4 316 69.9
Peaxi162Scf00397g00521 Petunia axillaris HOM05D005332 ORTHO05D006861 1.8e-123 446.4 316 69.0
Rhsim07G0018900 Rhododendron simsii HOM05D005332 ORTHO05D006861 2.4e-123 446.0 314 70.4
Gohir.D11G091000 Gossypium hirsutum HOM05D005332 ORTHO05D006861 3.1e-123 445.7 314 70.1
FAN01G1890 Fragaria x ananassa HOM05D005332 ORTHO05D006861 9.0e-123 444.1 315 69.5
Gorai.007G097000 Gossypium raimondii HOM05D005332 ORTHO05D006861 9.0e-123 444.1 314 69.7
RcHm_v2.0_Chr1g0353111 Rosa chinensis HOM05D005332 ORTHO05D006861 9.0e-123 444.1 315 69.5
MSTRG.28212 Avicennia marina HOM05D005332 ORTHO05D006861 1.2e-122 443.7 321 65.4
FAN03G0731 Fragaria x ananassa HOM05D005332 ORTHO05D006861 1.5e-122 443.4 315 69.5
Hund27309 Selenicereus undatus HOM05D005332 ORTHO05D006861 1.5e-122 443.4 314 69.7
TWI59G1218 Tripterygium wilfordii HOM05D005332 ORTHO05D006861 1.5e-122 443.4 315 68.9
Thecc.01G365300 Theobroma cacao HOM05D005332 ORTHO05D006861 3.4e-122 442.2 314 69.1
CANSAT56G3547 Cannabis sativa HOM05D005332 ORTHO05D006861 5.8e-122 441.4 315 69.8
Oeu014686.1 Olea europaea HOM05D005332 ORTHO05D006861 7.6e-122 441.0 321 68.5
FAN10G1762 Fragaria x ananassa HOM05D005332 ORTHO05D006861 9.9e-122 440.7 315 69.8
Glyma.07G075200 Glycine max HOM05D005332 ORTHO05D006861 9.9e-122 440.7 320 67.2
Cpa.g.sc704.3 Carica papaya HOM05D005332 ORTHO05D006861 1.3e-121 440.3 317 68.5
THA.LOC104801453 Tarenaya hassleriana HOM05D005332 ORTHO05D006861 1.7e-121 439.9 317 67.8
Duzib138G1089 Durio zibethinus HOM05D005332 ORTHO05D006861 2.2e-121 439.5 315 68.9
Gohir.A11G082100 Gossypium hirsutum HOM05D005332 ORTHO05D006861 2.2e-121 439.5 314 69.4
Prupe.2G159800 Prunus persica HOM05D005332 ORTHO05D006861 2.2e-121 439.5 317 67.8
Nn6g33539 Nelumbo nucifera HOM05D005332 ORTHO05D006861 2.9e-121 439.1 314 69.7
arahy.Tifrunner.gnm1.ann1.CH4HI7 Arachis hypogaea HOM05D005332 ORTHO05D006861 3.8e-121 438.7 323 66.3
Eucgr.E00187 Eucalyptus grandis HOM05D005332 ORTHO05D006861 3.8e-121 438.7 312 67.9
SalBow5G4657 Salvia bowleyana HOM05D005332 ORTHO05D006861 3.8e-121 438.7 314 68.5
Phvul.010G093900 Phaseolus vulgaris HOM05D005332 ORTHO05D006861 6.4e-121 438.0 322 67.1
arahy.Tifrunner.gnm1.ann1.W4LYDN Arachis hypogaea HOM05D005332 ORTHO05D006861 8.4e-121 437.6 323 66.6
Ah.05g176380 Amaranthus hybridus HOM05D005332 ORTHO05D006861 1.1e-120 437.2 316 67.7
QL08p049836 Quercus lobata HOM05D005332 ORTHO05D006861 1.1e-120 437.2 353 63.5
Nitab4.5_0006669g0040 Nicotiana tabacum HOM05D005332 ORTHO05D006861 1.4e-120 436.8 371 59.8
Ciclev10021196m.g Citrus clementina HOM05D005332 ORTHO05D006861 1.9e-120 436.4 314 68.2
MD07G1128800 Malus domestica HOM05D005332 ORTHO05D006861 2.5e-120 436.0 321 66.7
PSO782G1310 Papaver somniferum HOM05D005332 ORTHO05D006861 2.5e-120 436.0 318 68.2
Sed0022570 Sechium edule HOM05D005332 ORTHO05D006861 3.2e-120 435.6 314 67.5
Medtr8g032270 Medicago truncatula HOM05D005332 ORTHO05D006861 9.3e-120 434.1 313 67.4
GSVIVG01026821001 Vitis vinifera HOM05D005332 ORTHO05D006861 9.3e-120 434.1 315 67.0
SGA_v2.0_scaffold43G16446 Striga asiatica HOM05D005332 ORTHO05D006861 1.2e-119 433.7 326 66.6
EL10Ac1g00521 Beta vulgaris HOM05D005332 ORTHO05D006861 6.0e-119 431.4 313 66.8
DCAR_006914 Daucus carota HOM05D005332 ORTHO05D006861 7.9e-119 431.0 310 67.7
Aqoxy5G03955 Aquilegia oxysepala HOM05D005332 ORTHO05D006861 1.3e-118 430.3 316 67.1
VMungo0331G0206 Vigna mungo HOM05D005332 ORTHO05D006861 1.3e-118 430.3 315 67.0
Lalb_Chr04g0256681 Lupinus albus HOM05D005332 ORTHO05D006861 2.3e-118 429.5 317 66.2
RcHm_v2.0_Chr0c39g0503341 Rosa chinensis HOM05D005332 ORTHO05D006861 3.9e-118 428.7 317 67.5
TPR.G9802 Trifolium pratense HOM05D005332 ORTHO05D006861 5.1e-118 428.3 320 66.6
Potri.014G079700 Populus trichocarpa HOM05D005332 ORTHO05D006861 8.7e-118 427.6 315 67.3
PSO478G0627 Papaver somniferum HOM05D005332 ORTHO05D006861 1.1e-117 427.2 337 65.6
CsaV3_6G005760 Cucumis sativus L. HOM05D005332 ORTHO05D006861 3.3e-117 425.6 314 66.2
Sabra14G0057900 Salix brachista HOM05D005332 ORTHO05D006861 4.3e-117 425.2 315 67.0
MELO3C022535.2 Cucumis melo HOM05D005332 ORTHO05D006861 7.4e-117 424.5 314 66.2
Lj3g0013979 Lotus japonicus HOM05D005332 ORTHO05D006861 2.1e-116 422.9 320 64.7
Migut.O00555 Erythranthe guttata HOM05D005332 ORTHO05D006861 3.7e-116 422.2 316 65.8
BcaB01g02194 Brassica carinata HOM05D005332 ORTHO05D006861 6.2e-116 421.4 328 66.8
A02p24170 Brassica napus HOM05D005332 ORTHO05D006861 4.0e-115 418.7 318 67.6
AL6G52870 Arabidopsis lyrata HOM05D005332 ORTHO05D006861 9.0e-115 417.5 321 65.4
BraA02t07408Z Brassica rapa HOM05D005332 ORTHO05D006861 9.0e-115 417.5 318 67.3
AT4G00560 Arabidopsis thaliana HOM05D005332 ORTHO05D006861 1.2e-114 417.2 324 64.8
Os02g0826200 Oryza sativa ssp. japonica HOM05D005332 ORTHO05D006861 1.2e-114 417.2 312 64.4
HPP92_025722 Vanilla planifolia HOM05D005332 ORTHO05D006861 3.4e-114 415.6 318 65.1
COL.COLO4_12599 Corchorus olitorius HOM05D005332 ORTHO05D006861 5.8e-114 414.8 314 66.2
Aa31LG5G430 Aethionema arabicum HOM05D005332 ORTHO05D006861 7.6e-114 414.5 317 64.0
BcaC03g16043 Brassica carinata HOM05D005332 ORTHO05D006861 7.6e-114 414.5 318 66.7
MBI18_g09781_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 1.0e-113 414.1 315 65.4
Sp6g00600 Schrenkiella parvula HOM05D005332 ORTHO05D006861 1.3e-113 413.7 316 65.5
C02p38040 Brassica napus HOM05D005332 ORTHO05D006861 2.2e-113 412.9 318 66.4
Ca_18844_v3 Cicer arietinum L. HOM05D005332 ORTHO05D006861 2.9e-113 412.5 310 67.4
ClCG06G000030 Citrullus lanatus HOM05D005332 ORTHO05D006861 6.5e-113 411.4 339 62.2
Thhalv10028798m.g Eutrema salsugineum HOM05D005332 ORTHO05D006861 8.4e-113 411.0 318 64.2
Carub.0006s3668 Capsella rubella HOM05D005332 ORTHO05D006861 2.5e-112 409.5 317 64.4
Zm00001eb259270 Zea mays HOM05D005332 ORTHO05D006861 3.2e-112 409.1 315 64.1
BolC2t09820H Brassica oleracea HOM05D005332 ORTHO05D006861 1.0e-110 404.1 330 63.9
AUR62004310 Chenopodium quinoa HOM05D005332 ORTHO05D006861 5.1e-110 401.7 314 62.4
SalBow5G2488 Salvia bowleyana HOM05D005332 ORTHO05D006861 1.5e-109 400.2 284 68.7
ATR0680G024 Amborella trichopoda HOM05D005332 ORTHO05D006861 1.4e-107 393.7 311 62.1
Atru.chr5.441 Acer truncatum HOM05D005332 ORTHO05D006861 3.4e-106 389.0 277 67.5
CDE09G0818 Ceratophyllum demersum HOM05D005332 ORTHO05D006861 6.5e-105 384.8 297 64.3
RcHm_v2.0_Chr1g0353281 Rosa chinensis HOM05D005332 ORTHO05D006861 8.5e-105 384.4 261 70.9
Migut.N01426 Erythranthe guttata HOM05D005332 ORTHO05D006861 1.6e-103 380.2 280 66.4
SEGI_02313 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 1.4e-102 377.1 316 59.8
CiPaw.01G056200 Carya illinoinensis HOM05D005332 ORTHO05D006861 9.7e-101 370.9 241 73.9
PGR042G0753 Punica granatum HOM05D005332 ORTHO05D006861 9.7e-101 370.9 278 65.1
Mapoly0113s0013 Marchantia polymorpha HOM05D005332 ORTHO05D006861 3.2e-96 355.9 310 57.1
RcHm_v2.0_Chr1g0353141 Rosa chinensis HOM05D005332 ORTHO05D006861 7.2e-96 354.8 242 72.3
CARHR248730 Cardamine hirsuta HOM05D005332 ORTHO05D006861 7.4e-93 344.7 239 70.3
RcHm_v2.0_Chr1g0353331 Rosa chinensis HOM05D005332 ORTHO05D006861 1.4e-91 340.5 234 72.6
Dinv43779 Davidia involucrata HOM05D005332 ORTHO05D006861 5.9e-90 335.1 202 79.7
Pp3c6_20490 Physcomitrium patens HOM05D005332 ORTHO05D006861 2.1e-87 326.6 319 51.4
unitig_0.g1508 Utricularia gibba HOM05D005332 ORTHO05D006861 4.4e-85 318.9 241 66.0
Sc23g0003120 Simmondsia chinensis HOM05D005332 ORTHO05D006861 7.0e-83 311.6 232 64.7
RcHm_v2.0_Chr1g0353241 Rosa chinensis HOM05D005332 ORTHO05D006861 9.1e-83 311.2 239 66.1
SMO137G0161 Selaginella moellendorffii HOM05D005332 ORTHO05D006861 4.2e-80 302.4 310 50.6
AUR62022761 Chenopodium quinoa HOM05D005332 ORTHO05D006861 4.8e-76 288.9 232 62.1
RcHm_v2.0_Chr0c39g0503281 Rosa chinensis HOM05D005332 ORTHO05D006861 3.8e-73 279.3 242 62.8
AagrBONN_evm.TU.Sc2ySwM_117.1953 Anthoceros agrestis HOM05D005332 ORTHO05D006861 1.9e-72 276.9 309 46.3
RcHm_v2.0_Chr0c39g0503211 Rosa chinensis HOM05D005332 ORTHO05D006861 5.5e-72 275.4 239 61.1
Psat4g153040 Pisum sativum HOM05D005332 ORTHO05D006861 1.5e-64 250.8 189 65.1
MBI18_g10614_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 1.4e-62 244.2 190 63.2
MD01G1052200 Malus domestica HOM05D005332 ORTHO05D006861 1.4e-54 217.6 181 62.4
PRCOL_00000453 Prasinoderma coloniale HOM05D005332 ORTHO05D006861 1.9e-51 207.2 312 41.0
MCO04G198 Micromonas commoda HOM05D005332 ORTHO05D006861 5.6e-48 195.7 322 41.0
Glyma.03G015066 Glycine max HOM05D005332 ORTHO05D006861 1.1e-46 191.4 132 68.2
CAN.G960.12 Capsicum annuum HOM05D005332 ORTHO05D006861 1.4e-43 181.0 123 73.2
Cre17.g718250 Chlamydomonas reinhardtii HOM05D005332 ORTHO05D006861 2.0e-37 160.6 321 35.2
QL02p088489 Quercus lobata HOM05D005332 ORTHO05D006861 2.4e-35 153.7 112 66.1
QL03p011361 Quercus lobata HOM05D005332 ORTHO05D006861 2.4e-35 153.7 112 66.1
QL07p038896 Quercus lobata HOM05D005332 ORTHO05D006861 2.4e-35 153.7 112 66.1
QL02p088470 Quercus lobata HOM05D005332 ORTHO05D006861 4.1e-35 152.9 107 70.1
RcHm_v2.0_Chr1g0353211 Rosa chinensis HOM05D005332 ORTHO05D006861 3.5e-34 149.8 108 69.4
SEGI_30707 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 4.6e-34 149.4 124 56.5
Psat4g153000 Pisum sativum HOM05D005332 ORTHO05D006861 1.1e-27 128.3 79 79.7
MD01G1052100 Malus domestica HOM05D005332 ORTHO05D006861 4.2e-27 126.3 128 52.3
arahy.Tifrunner.gnm1.ann1.FSVT9P Arachis hypogaea HOM05D005332 ORTHO05D006861 1.3e-25 121.3 90 63.3
arahy.Tifrunner.gnm1.ann1.F84KN2 Arachis hypogaea HOM05D005332 ORTHO05D006861 1.7e-25 120.9 98 58.2
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 1.4e-22 111.3 82 68.3
RcHm_v2.0_Chr3g0477641 Rosa chinensis HOM05D005332 ORTHO05D006861 4.3e-16 89.7 54 72.2
RcHm_v2.0_Chr1g0353321 Rosa chinensis HOM05D005332 ORTHO05D006861 2.8e-15 87.0 75 58.7
arahy.Tifrunner.gnm1.ann1.6Z7PRK Arachis hypogaea HOM05D005332 ORTHO05D006861 1.3e-12 78.2 57 63.2
Glyma.03G015132 Glycine max HOM05D005332 ORTHO05D006861 2.4e-11 73.9 85 48.2
arahy.Tifrunner.gnm1.ann1.SQV5XE Arachis hypogaea HOM05D005332 ORTHO05D004201 5.6e-08 62.8 47 66.0
RcHm_v2.0_Chr0c39g0503291 Rosa chinensis HOM05D005332 ORTHO05D006861 5.6e-08 62.8 60 55.0
RcHm_v2.0_Chr1g0353131 Rosa chinensis HOM05D005332 ORTHO05D006861 5.6e-08 62.8 60 55.0


User provided reference genes

Program Settings