Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA240G0244 Erigeron canadensis HOM05D005570 ORTHO05D007368 1.1e-75 286.6 142 100.0
HanXRQChr03g0075001 Helianthus annuus HOM05D005570 ORTHO05D007368 7.1e-72 273.9 141 94.3
Lsat_1_v5_gn_9_102501 Lactuca sativa HOM05D005570 ORTHO05D007368 8.2e-68 260.4 141 89.4
Duzib213G1053 Durio zibethinus HOM05D005570 ORTHO05D007368 8.5e-57 223.8 137 78.1
Gohir.D01G037900 Gossypium hirsutum HOM05D005570 ORTHO05D007368 1.4e-56 223.0 136 77.9
Gorai.002G046300 Gossypium raimondii HOM05D005570 ORTHO05D007368 1.4e-56 223.0 136 77.9
Ciclev10016955m.g Citrus clementina HOM05D005570 ORTHO05D007368 2.5e-56 222.2 139 77.0
Cc02_g29600 Coffea canephora HOM05D005570 ORTHO05D007368 2.5e-56 222.2 137 77.4
Gohir.A01G047200 Gossypium hirsutum HOM05D005570 ORTHO05D007368 9.3e-56 220.3 136 77.2
Hma1.2p1_0599F.1_g187020 Hydrangea macrophylla HOM05D005570 ORTHO05D007368 2.1e-55 219.2 142 76.1
CSS0001120 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 3.6e-55 218.4 141 75.2
TWI18G0239 Tripterygium wilfordii HOM05D005570 ORTHO05D007368 3.6e-55 218.4 141 73.0
Peaxi162Scf00612g00133 Petunia axillaris HOM05D005570 ORTHO05D007368 6.1e-55 217.6 142 73.9
COL.COLO4_17467 Corchorus olitorius HOM05D005570 ORTHO05D007368 7.9e-55 217.2 136 77.9
Thecc.07G134300 Theobroma cacao HOM05D005570 ORTHO05D007368 1.0e-54 216.9 137 75.2
Solyc07g042710.3 Solanum lycopersicum HOM05D005570 ORTHO05D007368 1.8e-54 216.1 141 73.0
Sopen07g023810 Solanum pennellii HOM05D005570 ORTHO05D007368 1.8e-54 216.1 141 73.0
Cfa018716 Carpinus fangiana HOM05D005570 ORTHO05D007368 1.1e-53 213.4 142 74.6
Haze_07109 Corylus avellana HOM05D005570 ORTHO05D007368 1.1e-53 213.4 142 74.6
Nitab4.5_0005354g0010 Nicotiana tabacum HOM05D005570 ORTHO05D007368 1.1e-53 213.4 141 70.9
Lj9C217G3 Lonicera japonica HOM05D005570 ORTHO05D007368 1.9e-53 212.6 141 73.8
Nitab4.5_0005376g0020 Nicotiana tabacum HOM05D005570 ORTHO05D007368 4.3e-53 211.5 140 70.7
Atru.chr6.3424 Acer truncatum HOM05D005570 ORTHO05D007368 5.7e-53 211.1 141 74.5
MSTRG.12255 Avicennia marina HOM05D005570 ORTHO05D007368 7.4e-53 210.7 142 69.7
Potri.014G169500 Populus trichocarpa HOM05D005570 ORTHO05D007368 9.7e-53 210.3 141 73.8
Manes.13G060500 Manihot esculenta HOM05D005570 ORTHO05D007368 2.2e-52 209.1 140 74.3
CSS0020937 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 6.3e-52 207.6 141 71.6
DCAR_008745 Daucus carota HOM05D005570 ORTHO05D007368 6.3e-52 207.6 135 73.3
Carub.0003s2602 Capsella rubella HOM05D005570 ORTHO05D007368 1.1e-51 206.8 141 68.8
Sc21g0000460 Simmondsia chinensis HOM05D005570 ORTHO05D007368 1.1e-51 206.8 141 70.9
CiPaw.01G284700 Carya illinoinensis HOM05D005570 ORTHO05D007368 1.4e-51 206.5 140 73.6
CARHR102200 Cardamine hirsuta HOM05D005570 ORTHO05D007368 1.8e-51 206.1 141 69.5
ClCG06G018310 Citrullus lanatus HOM05D005570 ORTHO05D007368 1.8e-51 206.1 140 72.1
Thhalv10002687m.g Eutrema salsugineum HOM05D005570 ORTHO05D007368 3.1e-51 205.3 141 68.8
Sabra14G0129400 Salix brachista HOM05D005570 ORTHO05D007368 4.1e-51 204.9 140 72.1
PGR044G2338 Punica granatum HOM05D005570 ORTHO05D007368 5.3e-51 204.5 136 72.8
Sp3g23170 Schrenkiella parvula HOM05D005570 ORTHO05D007368 5.3e-51 204.5 141 68.1
CsaV3_1G000130 Cucumis sativus L. HOM05D005570 ORTHO05D007368 6.9e-51 204.1 140 70.7
MD06G1132000 Malus domestica HOM05D005570 ORTHO05D007368 6.9e-51 204.1 143 71.3
MD14G1148400 Malus domestica HOM05D005570 ORTHO05D007368 6.9e-51 204.1 143 70.6
FAN13G2066 Fragaria x ananassa HOM05D005570 ORTHO05D007368 9.1e-51 203.8 145 69.7
FAN18G0853 Fragaria x ananassa HOM05D005570 ORTHO05D007368 9.1e-51 203.8 145 69.7
PGR031G1532 Punica granatum HOM05D005570 ORTHO05D007368 9.1e-51 203.8 135 73.3
RcHm_v2.0_Chr7g0188821 Rosa chinensis HOM05D005570 ORTHO05D007368 9.1e-51 203.8 143 70.6
FvH4_5g09330 Fragaria vesca HOM05D005570 ORTHO05D007368 1.2e-50 203.4 144 69.4
Prupe.5G143000 Prunus persica HOM05D005570 ORTHO05D007368 1.2e-50 203.4 143 70.6
TAR374G1095 Trochodendron aralioides HOM05D005570 ORTHO05D007368 1.5e-50 203.0 137 70.1
Aa31LG7G6130 Aethionema arabicum HOM05D005570 ORTHO05D007368 2.0e-50 202.6 133 72.2
MBI14_g24038_MAGBIO Magnolia biondii HOM05D005570 ORTHO05D007368 2.6e-50 202.2 140 68.6
BcaB06g26780 Brassica carinata HOM05D005570 ORTHO05D007368 4.5e-50 201.4 141 67.4
AUR62019308 Chenopodium quinoa HOM05D005570 ORTHO05D007368 4.5e-50 201.4 136 72.1
C07p10300 Brassica napus HOM05D005570 ORTHO05D007368 5.9e-50 201.1 138 68.1
Nn4g22113 Nelumbo nucifera HOM05D005570 ORTHO05D007368 5.9e-50 201.1 136 71.3
AT2G04340 Arabidopsis thaliana HOM05D005570 ORTHO05D007368 7.7e-50 200.7 141 67.4
BcaC06g35864 Brassica carinata HOM05D005570 ORTHO05D007368 7.7e-50 200.7 138 68.1
A07p06720 Brassica napus HOM05D005570 ORTHO05D007368 7.7e-50 200.7 138 68.1
BolC7t41480H Brassica oleracea HOM05D005570 ORTHO05D007368 7.7e-50 200.7 138 68.1
BraA07t28466Z Brassica rapa HOM05D005570 ORTHO05D007368 7.7e-50 200.7 138 68.1
FAN04G1041 Fragaria x ananassa HOM05D005570 ORTHO05D007368 7.7e-50 200.7 145 69.0
AUR62000128 Chenopodium quinoa HOM05D005570 ORTHO05D007368 1.3e-49 199.9 141 68.8
Rhsim04G0030600 Rhododendron simsii HOM05D005570 ORTHO05D007368 1.3e-49 199.9 141 69.5
Migut.H01280 Erythranthe guttata HOM05D005570 ORTHO05D007368 2.2e-49 199.1 141 66.0
Eucgr.K01395 Eucalyptus grandis HOM05D005570 ORTHO05D007368 2.2e-49 199.1 135 70.4
Sed0027705 Sechium edule HOM05D005570 ORTHO05D007368 2.2e-49 199.1 140 69.3
GSVIVG01018573001 Vitis vinifera HOM05D005570 ORTHO05D007368 3.8e-49 198.4 140 67.9
AL3G42010 Arabidopsis lyrata HOM05D005570 ORTHO05D007368 1.1e-48 196.8 137 67.2
Glyma.07G223300 Glycine max HOM05D005570 ORTHO05D007368 1.1e-48 196.8 143 69.2
QL10p000758 Quercus lobata HOM05D005570 ORTHO05D007368 2.5e-48 195.7 140 67.9
VMungo0251G2804 Vigna mungo HOM05D005570 ORTHO05D007368 9.4e-48 193.7 143 67.1
Actinidia07853 Actinidia chinensis HOM05D005570 ORTHO05D007368 1.2e-47 193.4 136 67.6
HPP92_013643 Vanilla planifolia HOM05D005570 ORTHO05D007368 1.2e-47 193.4 132 68.9
Phvul.002G100000 Phaseolus vulgaris HOM05D005570 ORTHO05D007368 4.6e-47 191.4 143 65.7
arahy.Tifrunner.gnm1.ann1.66C0B7 Arachis hypogaea HOM05D005570 ORTHO05D007368 1.8e-46 189.5 141 63.8
arahy.Tifrunner.gnm1.ann1.TWVE3E Arachis hypogaea HOM05D005570 ORTHO05D007368 1.8e-46 189.5 141 63.8
arahy.Tifrunner.gnm1.ann1.18Q938 Arachis hypogaea HOM05D005570 ORTHO05D007368 2.3e-46 189.1 138 65.9
arahy.Tifrunner.gnm1.ann1.CPK3HX Arachis hypogaea HOM05D005570 ORTHO05D007368 5.1e-46 188.0 138 65.9
CSS0039609 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 6.7e-46 187.6 140 66.4
ATR0751G216 Amborella trichopoda HOM05D005570 ORTHO05D007368 1.5e-45 186.4 136 66.2
Aqoxy2G01347 Aquilegia oxysepala HOM05D005570 ORTHO05D007368 1.5e-45 186.4 141 66.0
unitig_26.g9513 Utricularia gibba HOM05D005570 ORTHO05D007368 1.5e-45 186.4 141 62.4
Zm00001eb101470 Zea mays HOM05D005570 ORTHO05D007368 2.6e-45 185.7 132 66.7
Lj1g0005707 Lotus japonicus HOM05D005570 ORTHO05D007368 3.3e-45 185.3 143 62.9
PSO063G1837 Papaver somniferum HOM05D005570 ORTHO05D007368 3.3e-45 185.3 139 64.7
Aqoxy7G00316 Aquilegia oxysepala HOM05D005570 ORTHO05D007368 4.4e-45 184.9 140 65.7
Ca_18776_v3 Cicer arietinum L. HOM05D005570 ORTHO05D007368 4.4e-45 184.9 143 62.9
Os09g0478400 Oryza sativa ssp. japonica HOM05D005570 ORTHO05D007368 4.4e-45 184.9 138 66.7
PSO357G0372 Papaver somniferum HOM05D005570 ORTHO05D007368 5.7e-45 184.5 144 63.9
Lalb_Chr09g0328771 Lupinus albus HOM05D005570 ORTHO05D007368 7.4e-45 184.1 143 62.9
PSO063G6961 Papaver somniferum HOM05D005570 ORTHO05D007368 2.8e-44 182.2 139 62.6
CANSAT01G1761 Cannabis sativa HOM05D005570 ORTHO05D007368 6.3e-44 181.0 137 68.6
EL10Ac4g10242 Beta vulgaris HOM05D005570 ORTHO05D007368 1.1e-43 180.3 179 53.1
Medtr4g083580 Medicago truncatula HOM05D005570 ORTHO05D007368 1.8e-43 179.5 144 63.2
TPR.G11531 Trifolium pratense HOM05D005570 ORTHO05D007368 1.8e-43 179.5 143 62.9
MELO3C026167.2 Cucumis melo HOM05D005570 ORTHO05D007368 5.3e-43 177.9 204 49.5
PSO421G0324 Papaver somniferum HOM05D005570 ORTHO05D007368 5.3e-43 177.9 140 62.1
Psat7g132520 Pisum sativum HOM05D005570 ORTHO05D007368 5.3e-43 177.9 139 61.2
TPR.G34081 Trifolium pratense HOM05D005570 ORTHO05D007368 3.4e-42 175.3 139 62.6
Cpa.g.sc136.41 Carica papaya HOM05D005570 ORTHO05D007368 7.7e-42 174.1 118 72.0
MBI14_g13534_MAGBIO Magnolia biondii HOM05D005570 ORTHO05D007368 7.7e-42 174.1 109 75.2
Lsat_1_v5_gn_4_24381 Lactuca sativa HOM05D005570 ORTHO05D007368 1.0e-41 173.7 103 82.5
Oeu015172.1 Olea europaea HOM05D005570 ORTHO05D007368 6.5e-41 171.0 112 73.2
PSO421G0119 Papaver somniferum HOM05D005570 ORTHO05D007368 3.2e-40 168.7 141 59.6
Ah.12g059860 Amaranthus hybridus HOM05D005570 ORTHO05D007368 1.6e-39 166.4 108 73.1
Lj8A137G54 Lonicera japonica HOM05D005570 ORTHO05D007368 1.6e-39 166.4 113 71.7
TWI36G1338 Tripterygium wilfordii HOM05D005570 ORTHO05D007368 3.0e-38 162.2 112 67.9
SGA_v2.0_scaffold96G29016 Striga asiatica HOM05D005570 ORTHO05D007368 4.4e-37 158.3 112 68.8
vmacro09474 Vaccinium macrocarpon HOM05D005570 ORTHO05D007368 3.7e-36 155.2 123 65.0
SGA_v2.0_scaffold317G48443 Striga asiatica HOM05D005570 ORTHO05D007368 1.8e-35 152.9 111 67.6
CDE10G0507 Ceratophyllum demersum HOM05D005570 ORTHO05D007368 2.9e-33 145.6 109 64.2
Hund21535 Selenicereus undatus HOM05D005570 ORTHO05D007368 1.5e-32 143.3 91 73.6
SGA_v2.0_scaffold317G48460 Striga asiatica HOM05D005570 ORTHO05D007368 3.2e-32 142.1 113 63.7
SEGI_08222 Sequoiadendron giganteum HOM05D005570 ORTHO05D007368 9.4e-32 140.6 114 57.9
Rhsim04G0030300 Rhododendron simsii HOM05D005570 ORTHO05D007368 1.6e-31 139.8 90 73.3
SGA_v2.0_scaffold28G12060 Striga asiatica HOM05D005570 ORTHO05D007368 2.7e-31 139.0 110 62.7
Rhsim04G0030400 Rhododendron simsii HOM05D005570 ORTHO05D007368 2.0e-29 132.9 82 75.6
SGA_v2.0_scaffold2G00813 Striga asiatica HOM05D005570 ORTHO05D007368 7.0e-27 124.4 120 57.5
SGA_v2.0_scaffold323G48653 Striga asiatica HOM05D005570 ORTHO05D007368 2.0e-26 122.9 112 56.2
Mapoly0084s0063 Marchantia polymorpha HOM05D005570 ORTHO05D007368 1.7e-25 119.8 124 46.0
Gohir.D01G037901 Gossypium hirsutum HOM05D005570 ORTHO05D007368 3.8e-25 118.6 84 65.5
Pp3c22_13450 Physcomitrium patens HOM05D005570 ORTHO05D007368 6.1e-23 111.3 131 43.5
Solyc07g045260.3 Solanum lycopersicum HOM05D005570 ORTHO05D007368 6.1e-23 111.3 66 77.3
Oeu031101.2 Olea europaea HOM05D005570 ORTHO05D007368 2.8e-20 102.4 54 85.2
Lsat_1_v5_gn_4_72161 Lactuca sativa HOM05D005570 ORTHO05D007368 1.1e-19 100.5 53 86.8
Potri.014G169750 Populus trichocarpa HOM05D005570 ORTHO05D007368 4.5e-18 95.1 50 90.0
SGA_v2.0_scaffold317G48459 Striga asiatica HOM05D005570 ORTHO05D007368 7.2e-16 87.8 56 71.4
Glyma.20G022600 Glycine max HOM05D005570 ORTHO05D007368 2.1e-15 86.3 78 56.4
Potri.001G240904 Populus trichocarpa HOM05D005570 ORTHO05D007368 3.0e-14 82.4 49 81.6
Potri.001G241100 Populus trichocarpa HOM05D005570 ORTHO05D007368 8.9e-14 80.9 63 65.1
CBR_g57071 Chara braunii HOM05D001740 ORTHO05D001468 1.8e-11 73.2 85 36.5
Hund30621 Selenicereus undatus HOM05D005570 ORTHO05D007368 1.7e-09 66.6 50 64.0
Hund30622 Selenicereus undatus HOM05D005570 ORTHO05D007368 1.7e-09 66.6 50 64.0


User provided reference genes

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