Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA240G0221 Erigeron canadensis HOM05D004076 ORTHO05D004606 0.0e+00 1501.1 774 100.0
HanXRQChr03g0090111 Helianthus annuus HOM05D004076 ORTHO05D004606 7.0e-246 854.4 814 59.5
Lsat_1_v5_gn_3_110821 Lactuca sativa HOM05D004076 ORTHO05D004606 1.2e-192 677.6 796 53.0
Hma1.2p1_0639F.1_g194000 Hydrangea macrophylla HOM05D004076 ORTHO05D004606 3.5e-112 410.2 783 39.7
Actinidia39854 Actinidia chinensis HOM05D004076 ORTHO05D004606 2.2e-106 391.0 793 37.1
Dinv44195 Davidia involucrata HOM05D004076 ORTHO05D004606 2.9e-103 380.6 754 39.0
Actinidia11304 Actinidia chinensis HOM05D004076 ORTHO05D004606 7.3e-102 375.9 784 36.4
MD04G1007700 Malus domestica HOM05D004076 ORTHO05D004606 1.6e-101 374.8 795 36.2
GSVIVG01010749001 Vitis vinifera HOM05D004076 ORTHO05D004606 4.4e-99 366.7 779 35.7
Cfa015154 Carpinus fangiana HOM05D004076 ORTHO05D004606 1.3e-98 365.2 792 34.7
EL10Ac3g05923 Beta vulgaris HOM05D004076 ORTHO05D004606 2.9e-98 364.0 817 35.4
Lj3g0002927 Lotus japonicus HOM05D004076 ORTHO05D004606 7.0e-97 359.4 797 34.6
Manes.04G041450 Manihot esculenta HOM05D004076 ORTHO05D004606 2.3e-95 354.4 778 34.8
RcHm_v2.0_Chr4g0407011 Rosa chinensis HOM05D004076 ORTHO05D004606 6.6e-95 352.8 779 35.3
Lalb_Chr14g0372441 Lupinus albus HOM05D004076 ORTHO05D004606 5.6e-94 349.7 779 35.0
Rhsim02G0076700 Rhododendron simsii HOM05D004076 ORTHO05D004606 1.4e-92 345.1 821 33.0
Duzib212G0448 Durio zibethinus HOM05D004076 ORTHO05D004606 1.8e-92 344.7 773 35.7
MELO3C011646.2 Cucumis melo HOM05D004076 ORTHO05D004606 7.5e-91 339.3 779 34.1
QL10p048538 Quercus lobata HOM05D004076 ORTHO05D004606 4.9e-90 336.7 784 34.6
Sed0018268 Sechium edule HOM05D004076 ORTHO05D004606 8.3e-90 335.9 771 33.7
TAR633G1822 Trochodendron aralioides HOM05D004076 ORTHO05D004606 7.0e-89 332.8 733 36.2
Lj3A198G30 Lonicera japonica HOM05D004076 ORTHO05D004606 2.7e-88 330.9 801 33.8
Ca_01262_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 7.8e-88 329.3 773 34.4
Lalb_Chr01g0003201 Lupinus albus HOM05D004076 ORTHO05D004606 1.9e-86 324.7 775 32.9
FvH4_4g10700 Fragaria vesca HOM05D004076 ORTHO05D004606 1.2e-85 322.0 804 34.1
FAN07G2191 Fragaria x ananassa HOM05D004076 ORTHO05D004606 1.2e-85 322.0 803 34.0
Phvul.011G055000 Phaseolus vulgaris HOM05D004076 ORTHO05D004606 3.6e-85 320.5 802 32.4
VMungo1127G1790 Vigna mungo HOM05D004076 ORTHO05D004606 6.2e-85 319.7 804 32.1
Psat1g007120 Pisum sativum HOM05D004076 ORTHO05D004606 8.1e-85 319.3 871 32.4
AUR62002294 Chenopodium quinoa HOM05D004076 ORTHO05D004606 1.1e-84 318.9 867 32.3
Gorai.006G227200 Gossypium raimondii HOM05D004076 ORTHO05D004606 1.1e-84 318.9 763 33.7
Potri.007G127800 Populus trichocarpa HOM05D004076 ORTHO05D004606 1.4e-84 318.5 798 32.8
Thecc.04G186100 Theobroma cacao HOM05D004076 ORTHO05D004606 3.1e-84 317.4 779 33.0
Medtr4g067090 Medicago truncatula HOM05D004076 ORTHO05D004606 5.2e-84 316.6 771 31.4
DCAR_031879 Daucus carota HOM05D004076 ORTHO05D004606 8.9e-84 315.8 763 34.3
Medtr2g098830 Medicago truncatula HOM05D004076 ORTHO05D004606 2.6e-83 314.3 772 33.8
Gohir.A09G209900 Gossypium hirsutum HOM05D004076 ORTHO05D004606 3.4e-83 313.9 763 33.6
Nn1g09697 Nelumbo nucifera HOM05D004076 ORTHO05D004606 5.8e-83 313.2 763 33.6
Sabra17G0020100 Salix brachista HOM05D004076 ORTHO05D004606 2.9e-82 310.8 833 32.4
TPR.G35423 Trifolium pratense HOM05D004076 ORTHO05D004606 1.1e-81 308.9 773 33.4
Atru.chr3.1528 Acer truncatum HOM05D004076 ORTHO05D004606 3.2e-81 307.4 707 35.6
Aqoxy7G02132 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 2.7e-80 304.3 811 33.4
PGR031G3172 Punica granatum HOM05D004076 ORTHO05D004606 2.7e-80 304.3 781 32.7
Eucgr.H00375 Eucalyptus grandis HOM05D004076 ORTHO05D004606 3.5e-80 303.9 776 32.1
Nitab4.5_0000313g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 1.0e-79 302.4 778 34.2
Aqoxy7G03601 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 1.7e-79 301.6 799 34.5
FAN17G1176 Fragaria x ananassa HOM05D004076 ORTHO05D004606 3.0e-79 300.8 780 34.0
Prupe.1G191700 Prunus persica HOM05D004076 ORTHO05D004606 5.1e-79 300.1 714 34.9
Glyma.15G030500 Glycine max HOM05D004076 ORTHO05D004606 2.5e-78 297.7 790 30.6
CANSAT78G1401 Cannabis sativa HOM05D004076 ORTHO05D004606 2.1e-77 294.7 779 33.2
Oeu032957.2 Olea europaea HOM05D004076 ORTHO05D004606 1.8e-76 291.6 781 32.3
TWI63G0993 Tripterygium wilfordii HOM05D004076 ORTHO05D004606 3.4e-75 287.3 735 34.3
Peaxi162Scf00297g01124 Petunia axillaris HOM05D004076 ORTHO05D004606 4.4e-75 287.0 825 31.5
THA.LOC104826195 Tarenaya hassleriana HOM05D004076 ORTHO05D004606 1.3e-74 285.4 769 31.5
MSTRG.28249 Avicennia marina HOM05D004076 ORTHO05D004606 2.2e-74 284.6 837 31.5
arahy.Tifrunner.gnm1.ann1.68X0LC Arachis hypogaea HOM05D004076 ORTHO05D004606 3.2e-73 280.8 772 31.9
Aa31LG1G8350 Aethionema arabicum HOM05D004076 ORTHO05D004606 4.1e-73 280.4 755 31.0
DCAR_027539 Daucus carota HOM05D004076 ORTHO05D004606 1.6e-72 278.5 784 31.2
AL1G15900 Arabidopsis lyrata HOM05D004076 ORTHO05D004606 5.1e-71 273.5 761 31.3
CiPaw.01G101100 Carya illinoinensis HOM05D004076 ORTHO05D004606 8.7e-71 272.7 330 47.0
CsaV3_6G003850 Cucumis sativus L. HOM05D004076 ORTHO05D004606 1.1e-70 272.3 640 34.1
arahy.Tifrunner.gnm1.ann1.33ZKBH Arachis hypogaea HOM05D004076 ORTHO05D004606 1.5e-70 271.9 754 31.8
CARHR005480 Cardamine hirsuta HOM05D004076 ORTHO05D004606 7.3e-70 269.6 756 30.2
Thhalv10007042m.g Eutrema salsugineum HOM05D004076 ORTHO05D004606 1.2e-69 268.9 771 30.6
Sabra07G0104100 Salix brachista HOM05D004076 ORTHO05D004606 1.6e-69 268.5 759 31.1
ClCG08G004480 Citrullus lanatus HOM05D004076 ORTHO05D004606 1.4e-68 265.4 937 29.0
FAN12G1510 Fragaria x ananassa HOM05D004076 ORTHO05D004606 2.4e-68 264.6 791 31.5
arahy.Tifrunner.gnm1.ann1.KU5ADZ Arachis hypogaea HOM05D004076 ORTHO05D004606 4.0e-68 263.8 727 31.4
Ciclev10020610m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.2e-67 262.3 306 50.3
Sopen07g034480 Solanum pennellii HOM05D004076 ORTHO05D004606 2.2e-66 258.1 857 29.5
FAN12G0055 Fragaria x ananassa HOM05D004076 ORTHO05D004606 2.9e-66 257.7 784 31.5
Lj3g0000298 Lotus japonicus HOM05D004076 ORTHO05D004606 2.9e-66 257.7 732 30.7
Solyc03g121850.3 Solanum lycopersicum HOM05D004076 ORTHO05D004606 2.9e-66 257.7 760 29.6
Carub.0001s0531 Capsella rubella HOM05D004076 ORTHO05D004606 4.9e-66 256.9 754 29.0
Ciclev10020801m.g Citrus clementina HOM05D004076 ORTHO05D004606 4.9e-66 256.9 306 50.0
Sopen03g040670 Solanum pennellii HOM05D004076 ORTHO05D004606 4.9e-66 256.9 763 29.6
Psat7g213720 Pisum sativum HOM05D004076 ORTHO05D004606 6.4e-66 256.5 492 35.4
C08p51520 Brassica napus HOM05D004076 ORTHO05D004606 1.1e-65 255.8 767 29.5
BcaC07g42099 Brassica carinata HOM05D004076 ORTHO05D004606 1.4e-65 255.4 741 30.6
Cc03_g11440 Coffea canephora HOM05D004076 ORTHO05D004606 1.4e-65 255.4 301 50.2
TPR.G34235 Trifolium pratense HOM05D004076 ORTHO05D004606 5.4e-65 253.4 681 30.2
Ca_20781_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 2.7e-64 251.1 437 40.7
BolC8t52680H Brassica oleracea HOM05D004076 ORTHO05D004606 3.5e-64 250.8 767 29.3
Eucgr.G00183 Eucalyptus grandis HOM05D004076 ORTHO05D004606 6.0e-64 250.0 317 46.1
BraA09t42056Z Brassica rapa HOM05D004076 ORTHO05D004606 1.0e-63 249.2 751 29.3
arahy.Tifrunner.gnm1.ann1.ZR8I8Y Arachis hypogaea HOM05D004076 ORTHO05D004606 5.1e-63 246.9 764 29.8
Nitab4.5_0002475g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 5.1e-63 246.9 750 32.1
A09p67230 Brassica napus HOM05D004076 ORTHO05D004606 6.6e-63 246.5 762 29.5
Migut.B01848 Erythranthe guttata HOM05D004076 ORTHO05D004606 6.6e-63 246.5 773 29.9
Peaxi162Scf00297g01121 Petunia axillaris HOM05D004076 ORTHO05D004606 1.9e-62 245.0 305 46.2
PSO832G3772 Papaver somniferum HOM05D004076 ORTHO05D004606 9.6e-62 242.7 779 29.8
Eucgr.G00179 Eucalyptus grandis HOM05D004076 ORTHO05D004606 1.3e-61 242.3 325 44.6
MBI08_g23493_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D004606 6.9e-60 236.5 317 46.1
Gohir.D09G203332 Gossypium hirsutum HOM05D004076 ORTHO05D004606 2.6e-59 234.6 307 46.6
SalBow5G1086 Salvia bowleyana HOM05D004076 ORTHO05D004606 2.7e-56 224.6 300 44.0
Medtr2g098710 Medicago truncatula HOM05D004076 ORTHO05D004606 3.5e-56 224.2 418 36.8
ATR0686G221 Amborella trichopoda HOM05D004076 ORTHO05D004606 6.0e-56 223.4 859 26.8
SGA_v2.0_scaffold24G10696 Striga asiatica HOM05D004076 ORTHO05D004606 1.0e-55 222.6 771 27.8
AT1G05950 Arabidopsis thaliana HOM05D004076 ORTHO05D004606 1.3e-55 222.2 670 31.0
Eucgr.G00184 Eucalyptus grandis HOM05D004076 ORTHO05D004606 6.7e-55 219.9 305 43.6
Aqoxy7G02134 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 2.5e-54 218.0 357 40.9
Haze_01517 Corylus avellana HOM05D004076 ORTHO05D004606 5.6e-54 216.9 276 47.5
Medtr2g098730 Medicago truncatula HOM05D004076 ORTHO05D004606 8.1e-53 213.0 308 41.9
Ciclev10023338m.g Citrus clementina HOM05D004076 ORTHO05D004606 2.4e-52 211.5 266 47.0
Lj6A56T29 Lonicera japonica HOM05D004076 ORTHO05D004606 1.2e-51 209.1 389 37.5
Medtr2g098720 Medicago truncatula HOM05D004076 ORTHO05D004606 2.0e-51 208.4 308 41.9
SalBow3G0974 Salvia bowleyana HOM05D004076 ORTHO05D004606 5.8e-51 206.8 771 28.5
Eucgr.G00188 Eucalyptus grandis HOM05D004076 ORTHO05D004606 4.9e-50 203.8 286 43.4
Sp1g04770 Schrenkiella parvula HOM05D004076 ORTHO05D004606 6.4e-50 203.4 779 28.4
Nitab4.5_0009641g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 7.1e-49 199.9 269 45.7
COL.COLO4_33468 Corchorus olitorius HOM05D004076 ORTHO05D004606 2.7e-48 198.0 297 43.8
Migut.N01559 Erythranthe guttata HOM05D004076 ORTHO05D004606 3.5e-48 197.6 300 38.3
Nitab4.5_0005003g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 1.8e-47 195.3 268 45.9
Medtr0002s1280 Medicago truncatula HOM05D004076 ORTHO05D004606 1.5e-46 192.2 301 40.2
PGSC0003DMG400002575 Solanum tuberosum HOM05D004076 ORTHO05D004606 3.3e-46 191.0 273 43.2
Glyma.12G053033 Glycine max HOM05D004076 ORTHO05D004606 1.4e-44 185.7 285 40.4
CDE08G1584 Ceratophyllum demersum HOM05D004076 ORTHO05D004606 4.5e-43 180.6 829 26.9
Sc11g0003780 Simmondsia chinensis HOM05D004076 ORTHO05D004606 4.6e-40 170.6 219 47.0
Eucgr.G00171 Eucalyptus grandis HOM05D004076 ORTHO05D004606 5.1e-39 167.2 221 44.8
Zm00001eb318340 Zea mays HOM05D004076 ORTHO05D004606 8.7e-39 166.4 769 25.9
Glyma.11G128400 Glycine max HOM05D004076 ORTHO05D004606 2.0e-35 155.2 505 29.5
Medtr2g098770 Medicago truncatula HOM05D004076 ORTHO05D004606 5.0e-34 150.6 262 38.9
AUR62015396 Chenopodium quinoa HOM05D004076 ORTHO05D004606 7.4e-30 136.7 629 26.7
Cpa.g.sc9.266 Carica papaya HOM05D004076 ORTHO05D004606 2.8e-29 134.8 185 42.7
Ciclev10024150m.g Citrus clementina HOM05D004076 ORTHO05D004606 5.3e-28 130.6 188 46.8
Ciclev10024444m.g Citrus clementina HOM05D004076 ORTHO05D004606 5.3e-28 130.6 188 46.8
Gohir.D09G203266 Gossypium hirsutum HOM05D004076 ORTHO05D004606 5.9e-27 127.1 173 44.5
COL.COLO4_20907 Corchorus olitorius HOM05D004076 ORTHO05D004606 6.5e-26 123.6 688 25.7
Lj6A56G23 Lonicera japonica HOM05D004076 ORTHO05D004606 2.7e-24 118.2 368 30.2
Sed0002856 Sechium edule HOM05D004076 ORTHO05D004606 3.3e-22 111.3 216 32.9
Lj8A15T44 Lonicera japonica HOM05D004076 ORTHO05D004606 7.4e-22 110.2 126 46.8
BolC8t52678H Brassica oleracea HOM05D004076 ORTHO05D004606 5.3e-20 104.0 203 35.5
BraA09t42055Z Brassica rapa HOM05D004076 ORTHO05D004606 9.1e-20 103.2 193 36.8
C08p51510 Brassica napus HOM05D004076 ORTHO05D004606 1.2e-19 102.8 203 35.5
BraA09t42054Z Brassica rapa HOM05D004076 ORTHO05D004606 2.0e-19 102.1 203 35.0
SEGI_36759 Sequoiadendron giganteum HOM05D004076 ORTHO05D004606 2.6e-19 101.7 168 38.7
BolC8t52679H Brassica oleracea HOM05D004076 ORTHO05D004606 3.4e-19 101.3 175 37.1
Lj3g0024562 Lotus japonicus HOM05D004076 ORTHO05D004606 1.3e-18 99.4 151 37.1
BcaC07g42097 Brassica carinata HOM05D004076 ORTHO05D004606 1.7e-18 99.0 167 40.1
Lj8A15T42 Lonicera japonica HOM05D004076 ORTHO05D004606 1.9e-17 95.5 141 40.4
A09p67220 Brassica napus HOM05D004076 ORTHO05D004606 2.5e-17 95.1 224 32.1
Glyma.13G343800 Glycine max HOM05D004076 ORTHO05D004606 3.2e-17 94.7 113 42.5
Ciclev10022885m.g Citrus clementina HOM05D004076 ORTHO05D004606 2.7e-16 91.7 84 52.4
Hund12007 Selenicereus undatus HOM05D004076 ORTHO05D004606 2.7e-16 91.7 128 41.4
Os09g0514500 Oryza sativa ssp. japonica HOM05D004076 ORTHO05D004606 3.0e-15 88.2 171 36.3
FAN22G1497 Fragaria x ananassa HOM05D004076 ORTHO05D004606 8.2e-13 80.1 139 36.7
Lj3g0014411 Lotus japonicus HOM05D004076 ORTHO05D004606 3.1e-12 78.2 187 33.2
Haze_01516 Corylus avellana HOM05D004076 ORTHO05D004606 1.0e-10 73.2 257 28.4
MBI08_g23495_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D003073 1.5e-09 69.3 127 36.2
Peaxi162Scf00297g01127 Petunia axillaris HOM05D004076 ORTHO05D004606 4.2e-09 67.8 132 33.3
SHI23539 Sapria himalayana HOM05D004076 ORTHO05D004606 1.6e-08 65.9 79 53.2
BcaC07g42096 Brassica carinata HOM05D000961 ORTHO05D000841 2.6e-06 58.5 190 31.1
Cc03_g11430 Coffea canephora HOM05D004076 ORTHO05D004606 4.4e-06 57.8 207 27.5


User provided reference genes

Program Settings