Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA240G0129 Erigeron canadensis HOM05D007001 ORTHO05D005587 0.0e+00 1245.0 660 100.0
HanXRQChr03g0074191 Helianthus annuus HOM05D007001 ORTHO05D005587 3.4e-177 625.9 675 56.0
Lsat_1_v5_gn_9_108461 Lactuca sativa HOM05D007001 ORTHO05D005587 7.3e-127 458.8 675 48.6
Actinidia00536 Actinidia chinensis HOM05D007001 ORTHO05D005587 9.6e-79 298.9 477 40.7
Manes.04G089500 Manihot esculenta HOM05D007001 ORTHO05D005587 2.2e-75 287.7 708 32.5
Oeu029153.2 Olea europaea HOM05D007001 ORTHO05D005587 3.2e-74 283.9 671 31.9
Actinidia36006 Actinidia chinensis HOM05D007001 ORTHO05D005587 4.8e-70 270.0 480 38.8
Cfa004981 Carpinus fangiana HOM05D007001 ORTHO05D005587 1.5e-68 265.0 702 34.9
Haze_02407 Corylus avellana HOM05D007001 ORTHO05D005587 4.5e-68 263.5 566 37.3
vmacro02090 Vaccinium macrocarpon HOM05D007001 ORTHO05D005587 5.8e-68 263.1 683 32.4
CiPaw.05G066600 Carya illinoinensis HOM05D007001 ORTHO05D005587 3.8e-67 260.4 478 38.5
QL11p044451 Quercus lobata HOM05D007001 ORTHO05D005587 3.8e-67 260.4 497 38.6
Rhsim11G0179000 Rhododendron simsii HOM05D007001 ORTHO05D005587 2.5e-66 257.7 674 32.2
Cc02_g17350 Coffea canephora HOM05D007001 ORTHO05D005587 9.3e-66 255.8 701 31.0
CSS0022058 Camellia sinensis var. sinensis HOM05D007001 ORTHO05D005587 1.1e-63 248.8 479 38.8
GSVIVG01023803001 Vitis vinifera HOM05D007001 ORTHO05D005587 1.6e-62 245.0 411 38.7
TAR376G0762 Trochodendron aralioides HOM05D007001 ORTHO05D005587 1.4e-61 241.9 482 37.3
Manes.11G085600 Manihot esculenta HOM05D007001 ORTHO05D005587 2.4e-61 241.1 513 34.3
Duzib052G0704 Durio zibethinus HOM05D007001 ORTHO05D005587 6.9e-61 239.6 476 34.9
Atru.chr5.3047 Acer truncatum HOM05D007001 ORTHO05D005587 4.5e-60 236.9 727 31.1
Gohir.D12G029100 Gossypium hirsutum HOM05D007001 ORTHO05D005587 4.5e-60 236.9 448 35.5
COL.COLO4_25959 Corchorus olitorius HOM05D007001 ORTHO05D005587 7.7e-60 236.1 486 34.6
Duzib132G0641 Durio zibethinus HOM05D007001 ORTHO05D005587 2.2e-59 234.6 567 31.2
Gorai.008G029800 Gossypium raimondii HOM05D007001 ORTHO05D005587 5.0e-59 233.4 448 35.0
Thecc.02G082800 Theobroma cacao HOM05D007001 ORTHO05D005587 8.5e-59 232.6 478 33.1
Prupe.8G094200 Prunus persica HOM05D007001 ORTHO05D005587 9.4e-58 229.2 704 30.4
Oeu055597.1 Olea europaea HOM05D007001 ORTHO05D005587 2.7e-57 227.6 683 30.3
Potri.009G118651 Populus trichocarpa HOM05D007001 ORTHO05D005587 4.6e-57 226.9 643 32.3
MD10G1072800 Malus domestica HOM05D007001 ORTHO05D005587 6.7e-56 223.0 702 29.9
TWI79G0124 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 2.5e-55 221.1 505 35.4
RcHm_v2.0_Chr6g0265031 Rosa chinensis HOM05D007001 ORTHO05D005587 7.4e-55 219.5 713 30.2
MD05G1064100 Malus domestica HOM05D007001 ORTHO05D005587 2.8e-54 217.6 701 29.8
Peaxi162Scf00016g00623 Petunia axillaris HOM05D007001 ORTHO05D005587 1.4e-53 215.3 688 28.9
FvH4_2g09190 Fragaria vesca HOM05D007001 ORTHO05D005587 1.8e-53 214.9 711 29.0
Ciclev10027908m.g Citrus clementina HOM05D007001 ORTHO05D005587 2.4e-53 214.5 477 33.8
Nn5g29665 Nelumbo nucifera HOM05D007001 ORTHO05D005587 4.1e-53 213.8 577 31.7
Potri.004G157000 Populus trichocarpa HOM05D007001 ORTHO05D005587 5.3e-53 213.4 507 36.1
Sabra09G0090900 Salix brachista HOM05D007001 ORTHO05D005587 6.9e-53 213.0 691 30.1
Eucgr.G01689 Eucalyptus grandis HOM05D007001 ORTHO05D005587 8.5e-51 206.1 517 32.3
TWI31G1402 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 4.2e-50 203.8 471 33.3
Migut.N01249 Erythranthe guttata HOM05D007001 ORTHO05D005587 5.5e-50 203.4 414 35.7
Sabra04G0104900 Salix brachista HOM05D007001 ORTHO05D005587 1.4e-48 198.7 501 33.7
AUR62011300 Chenopodium quinoa HOM05D007001 ORTHO05D005587 8.8e-48 196.1 709 28.9
PGSC0003DMG400000714 Solanum tuberosum HOM05D007001 ORTHO05D005587 2.0e-47 194.9 687 29.0
Solyc01g109780.3 Solanum lycopersicum HOM05D007001 ORTHO05D005587 4.4e-47 193.7 686 27.8
Nitab4.5_0000308g0260 Nicotiana tabacum HOM05D007001 ORTHO05D005587 2.2e-46 191.4 423 33.8
Sopen01g051970 Solanum pennellii HOM05D007001 ORTHO05D005587 8.2e-46 189.5 679 28.3
CiPaw.06G134300 Carya illinoinensis HOM05D007001 ORTHO05D005587 1.2e-44 185.7 496 32.7
AUR62016758 Chenopodium quinoa HOM05D007001 ORTHO05D005587 1.2e-44 185.7 703 28.6
MBI10_g06730_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 2.0e-44 184.9 501 31.3
PGR042G0047 Punica granatum HOM05D007001 ORTHO05D005587 2.6e-44 184.5 498 31.9
FAN15G3137 Fragaria x ananassa HOM05D007001 ORTHO05D005587 1.0e-43 182.6 688 28.3
Cpa.g.sc17.13 Carica papaya HOM05D007001 ORTHO05D005587 2.2e-43 181.4 512 30.3
FAN24G0234 Fragaria x ananassa HOM05D007001 ORTHO05D005587 5.0e-43 180.3 692 27.7
Nitab4.5_0009972g0010 Nicotiana tabacum HOM05D007001 ORTHO05D005587 1.4e-42 178.7 400 34.2
SalBow6G2324 Salvia bowleyana HOM05D007001 ORTHO05D005587 3.2e-42 177.6 665 28.0
FAN27G0151 Fragaria x ananassa HOM05D007001 ORTHO05D005587 4.2e-42 177.2 686 28.0
Aqoxy5G01586 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 9.4e-42 176.0 483 30.6
Glyma.12G042500 Glycine max HOM05D007001 ORTHO05D005587 2.1e-41 174.9 494 30.8
EL10Ac9g21706 Beta vulgaris HOM05D007001 ORTHO05D005587 1.4e-40 172.2 670 28.4
Nitab4.5_0008874g0010 Nicotiana tabacum HOM05D007001 ORTHO05D005587 2.0e-39 168.3 466 31.1
Glyma.11G116700 Glycine max HOM05D007001 ORTHO05D005587 7.4e-39 166.4 554 28.3
SalBow3G2815 Salvia bowleyana HOM05D007001 ORTHO05D005587 2.8e-38 164.5 566 29.2
VMungo1127G1486 Vigna mungo HOM05D007001 ORTHO05D005587 3.7e-38 164.1 436 31.2
Ca_20889_v3 Cicer arietinum L. HOM05D007001 ORTHO05D005587 1.1e-37 162.5 454 31.1
Lj3g0024948 Lotus japonicus HOM05D007001 ORTHO05D005587 1.8e-37 161.8 522 29.9
Hund06244 Selenicereus undatus HOM05D007001 ORTHO05D005587 2.4e-37 161.4 490 30.6
CsaV3_2G014890 Cucumis sativus L. HOM05D007001 ORTHO05D005587 2.6e-36 157.9 497 30.2
Phvul.011G044100 Phaseolus vulgaris HOM05D007001 ORTHO05D005587 3.5e-36 157.5 433 31.9
TPR.G22545 Trifolium pratense HOM05D007001 ORTHO05D005587 4.5e-36 157.1 508 29.9
Sed0007775 Sechium edule HOM05D007001 ORTHO05D005587 5.0e-35 153.7 477 30.2
MBI16_g08804_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 1.9e-34 151.8 485 29.3
Psat7g184200 Pisum sativum HOM05D007001 ORTHO05D005587 1.9e-34 151.8 498 29.9
Lalb_Chr19g0138701 Lupinus albus HOM05D007001 ORTHO05D005587 3.2e-34 151.0 407 32.7
ClCG11G004280 Citrullus lanatus HOM05D007001 ORTHO05D005587 1.6e-33 148.7 518 28.6
DCAR_001566 Daucus carota HOM05D007001 ORTHO05D005587 8.0e-33 146.4 708 25.3
Migut.B00223 Erythranthe guttata HOM05D007001 ORTHO05D005587 1.0e-32 146.0 478 28.2
Dinv23502 Davidia involucrata HOM05D007001 ORTHO05D005587 2.3e-32 144.8 447 30.4
MELO3C023308.2 Cucumis melo HOM05D007001 ORTHO05D005587 3.0e-32 144.4 494 29.4
Ah.01g019240 Amaranthus hybridus HOM05D007001 ORTHO05D005587 5.2e-32 143.7 531 27.9
arahy.Tifrunner.gnm1.ann1.M1RWF9 Arachis hypogaea HOM05D007001 ORTHO05D005587 2.2e-30 138.3 452 28.5
arahy.Tifrunner.gnm1.ann1.I3TCZM Arachis hypogaea HOM05D007001 ORTHO05D005587 8.3e-30 136.3 452 28.1
Medtr4g070420 Medicago truncatula HOM05D007001 ORTHO05D005587 9.1e-29 132.9 527 27.3
Nitab4.5_0007728g0020 Nicotiana tabacum HOM05D007001 ORTHO05D005587 1.2e-28 132.5 224 40.2
Peaxi162Scf00003g01121 Petunia axillaris HOM05D007001 ORTHO05D005587 4.5e-28 130.6 386 32.6
PGSC0003DMG400007729 Solanum tuberosum HOM05D007001 ORTHO05D005587 5.9e-28 130.2 249 37.8
Lalb_Chr03g0025591 Lupinus albus HOM05D007001 ORTHO05D005587 3.2e-26 124.4 689 25.7
PSO170G6310 Papaver somniferum HOM05D007001 ORTHO05D005587 3.2e-26 124.4 381 31.2
PSO764G0276 Papaver somniferum HOM05D007001 ORTHO05D005587 1.0e-24 119.4 381 30.7
PSO675G1875 Papaver somniferum HOM05D007001 ORTHO05D005587 5.7e-23 113.6 462 28.8
Aqoxy6G01158 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 8.3e-22 109.8 401 26.7
Sopen10g023370 Solanum pennellii HOM05D007001 ORTHO05D005587 1.4e-21 109.0 235 34.9
CDE06G0685 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 1.2e-20 105.9 207 36.2
Lalb_Chr01g0002461 Lupinus albus HOM05D007001 ORTHO05D005587 2.5e-18 98.2 238 36.6
Oeu020745.1 Olea europaea HOM05D000342 ORTHO05D000217 3.3e-18 97.8 227 33.9
DCAR_028976 Daucus carota HOM05D007001 ORTHO05D005587 2.8e-17 94.7 571 21.9
THA.LOC104807308 Tarenaya hassleriana HOM05D007001 ORTHO05D005587 2.3e-16 91.7 429 27.0
Aa31LG8G13740 Aethionema arabicum HOM05D008776 ORTHO05D005587 8.9e-16 89.7 364 28.3
Nn1g04928 Nelumbo nucifera HOM05D007001 ORTHO05D005587 2.6e-15 88.2 193 35.2
SGA_v2.0_scaffold125G33736 Striga asiatica HOM05D007001 ORTHO05D005587 2.6e-15 88.2 304 28.9
AL3G52490 Arabidopsis lyrata HOM05D008776 ORTHO05D005587 3.4e-15 87.8 335 30.4
Carub.0003s3009 Capsella rubella HOM05D008776 ORTHO05D005587 9.8e-15 86.3 285 31.2
THA.LOC104804555 Tarenaya hassleriana HOM05D007001 ORTHO05D005587 1.3e-14 85.9 410 25.4
BcaB08g34642 Brassica carinata HOM05D008776 ORTHO05D005587 1.7e-14 85.5 281 29.5
AT2G16365 Arabidopsis thaliana HOM05D008776 ORTHO05D005587 2.2e-14 85.1 333 28.5
Gohir.A12G029800 Gossypium hirsutum HOM05D007001 ORTHO05D005587 1.8e-13 82.0 185 29.7
Solyc10g052650.3 Solanum lycopersicum HOM05D007001 ORTHO05D005587 2.4e-13 81.6 95 46.3
CARHR106580 Cardamine hirsuta HOM05D008776 ORTHO05D005587 1.2e-12 79.3 233 32.2
CDE05G0774 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 1.2e-12 79.3 185 33.0
BcaC01g03031 Brassica carinata HOM05D008776 ORTHO05D005587 2.0e-12 78.6 284 29.2
C03p56950 Brassica napus HOM05D008776 ORTHO05D005587 2.0e-12 78.6 284 29.2
BolC3t17973H Brassica oleracea HOM05D008776 ORTHO05D005587 2.0e-12 78.6 284 29.2
Sp3g29580 Schrenkiella parvula HOM05D008776 ORTHO05D005587 2.0e-12 78.6 364 29.1
Sc08g0000600 Simmondsia chinensis HOM05D007001 ORTHO05D005587 2.0e-12 78.6 213 33.3
BraA03t13706Z Brassica rapa HOM05D008776 ORTHO05D005587 2.7e-12 78.2 286 29.7
A03p45740 Brassica napus HOM05D008776 ORTHO05D005587 4.5e-12 77.4 286 29.4
Thhalv10022682m.g Eutrema salsugineum HOM05D008776 ORTHO05D005587 4.5e-12 77.4 286 30.8
BcaC06g36144 Brassica carinata HOM05D008776 ORTHO05D005587 1.0e-11 76.3 292 28.4
BolC7t41148H Brassica oleracea HOM05D008776 ORTHO05D005587 1.0e-11 76.3 292 28.4
A07p04560 Brassica napus HOM05D008776 ORTHO05D005587 2.3e-11 75.1 288 28.5
BraA07t28245Z Brassica rapa HOM05D008776 ORTHO05D005587 2.3e-11 75.1 288 28.5
C07p07280 Brassica napus HOM05D008776 ORTHO05D005587 3.9e-11 74.3 290 28.6
BcaB03g16349 Brassica carinata HOM05D008776 ORTHO05D005587 1.1e-10 72.8 363 26.7
HPP92_021324 Vanilla planifolia HOM05D007001 ORTHO05D005587 4.3e-10 70.9 244 26.6
HPP92_020281 Vanilla planifolia HOM05D007001 ORTHO05D005587 3.6e-09 67.8 76 44.7
Os01g0687300 Oryza sativa ssp. japonica HOM05D024721 ORTHO05D025980 2.3e-08 65.1 281 26.7
BcaC02g07919 Brassica carinata HOM05D008776 ORTHO05D005587 8.9e-08 63.2 80 41.2
Haze_00347 Corylus avellana HOM05D002899 ORTHO05D003850 2.0e-07 62.0 51 60.8
CDE04G2987 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 2.6e-07 61.6 200 30.0
unitig_699.g19881 Utricularia gibba HOM05D007001 ORTHO05D005587 7.5e-07 60.1 210 27.6
AT4G34550 Arabidopsis thaliana HOM05D008776 ORTHO05D005587 1.7e-06 58.9 224 29.0


User provided reference genes

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