Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA240G0064 Erigeron canadensis HOM05D000656 ORTHO05D006113 3.2e-72 275.0 143 100.0
ECA240G0789 Erigeron canadensis HOM05D000656 ORTHO05D006113 1.8e-38 162.9 138 68.8
ECA234G0127 Erigeron canadensis HOM05D000656 ORTHO05D006113 1.3e-33 146.7 141 60.3
HanXRQChr02g0038501 Helianthus annuus HOM05D000656 ORTHO05D006113 1.1e-32 143.7 138 59.4
HanXRQChr12g0373921 Helianthus annuus HOM05D000656 ORTHO05D006113 5.2e-30 134.8 139 58.3
CANSAT64G0397 Cannabis sativa HOM05D000656 ORTHO05D006113 1.3e-25 120.2 138 53.6
DCAR_021117 Daucus carota HOM05D000656 ORTHO05D006113 2.3e-25 119.4 141 53.9
TAR626G0230 Trochodendron aralioides HOM05D000656 ORTHO05D006113 3.0e-25 119.0 138 53.6
MD17G1110000 Malus domestica HOM05D000656 ORTHO05D006113 6.6e-25 117.9 140 54.3
MD09G1119100 Malus domestica HOM05D000656 ORTHO05D006113 1.1e-24 117.1 140 53.6
Cpa.g.sc987.3 Carica papaya HOM05D000656 ORTHO05D006113 4.3e-24 115.2 140 53.6
Gohir.D07G195560 Gossypium hirsutum HOM05D000656 ORTHO05D006113 4.3e-24 115.2 139 52.5
Gorai.001G219000 Gossypium raimondii HOM05D000656 ORTHO05D006113 5.6e-24 114.8 139 51.8
CiPaw.03G276100 Carya illinoinensis HOM05D000656 ORTHO05D006113 9.5e-24 114.0 122 58.2
Haze_12723 Corylus avellana HOM05D000656 ORTHO05D006113 1.2e-23 113.6 138 51.4
Gohir.A07G189300 Gossypium hirsutum HOM05D000656 ORTHO05D006113 1.6e-23 113.2 138 50.0
Sed0008305 Sechium edule HOM05D000656 ORTHO05D006113 8.0e-23 110.9 137 49.6
Duzib211G0166 Durio zibethinus HOM05D000656 ORTHO05D006113 1.8e-22 109.8 139 51.1
Lj8P132T44 Lonicera japonica HOM05D000656 ORTHO05D006113 3.1e-22 109.0 141 51.1
QL08p029521 Quercus lobata HOM05D000656 ORTHO05D006113 3.1e-22 109.0 132 52.3
Thecc.01G186100 Theobroma cacao HOM05D000656 ORTHO05D006113 3.1e-22 109.0 140 51.4
ClCG02G002500 Citrullus lanatus HOM05D000656 ORTHO05D006113 5.2e-22 108.2 137 48.9
Cfa014278 Carpinus fangiana HOM05D000656 ORTHO05D006113 6.8e-22 107.8 138 51.4
RcHm_v2.0_Chr2g0157201 Rosa chinensis HOM05D000656 ORTHO05D006113 8.9e-22 107.5 138 52.2
CsaV3_2G034240 Cucumis sativus L. HOM05D000656 ORTHO05D006113 2.6e-21 105.9 138 50.0
MELO3C018888.2 Cucumis melo HOM05D000656 ORTHO05D006113 3.4e-21 105.5 139 51.1
CSS0013754 Camellia sinensis var. sinensis HOM05D000656 ORTHO05D006113 5.8e-21 104.8 135 51.9
DCAR_019719 Daucus carota HOM05D000656 ORTHO05D006113 5.8e-21 104.8 140 47.9
CsaV3_7G002880 Cucumis sativus L. HOM05D000656 ORTHO05D006113 7.5e-21 104.4 139 50.4
Prupe.3G205100 Prunus persica HOM05D000656 ORTHO05D006113 7.5e-21 104.4 140 50.0
Lj1P787T32 Lonicera japonica HOM05D000656 ORTHO05D006113 9.8e-21 104.0 88 67.0
CiPaw.04G194100 Carya illinoinensis HOM05D000656 ORTHO05D006113 1.3e-20 103.6 141 50.4
Glyma.14G005300 Glycine max HOM05D000656 ORTHO05D006113 1.3e-20 103.6 138 47.8
Sed0016229 Sechium edule HOM05D000656 ORTHO05D006113 1.7e-20 103.2 139 49.6
FvH4_6g41530 Fragaria vesca HOM05D000656 ORTHO05D006113 2.2e-20 102.8 141 50.4
VMungo0647G1563 Vigna mungo HOM05D000656 ORTHO05D006113 2.9e-20 102.4 138 49.3
TWI18G0839 Tripterygium wilfordii HOM05D000656 ORTHO05D006113 3.7e-20 102.1 132 49.2
TAR624G0883 Trochodendron aralioides HOM05D000656 ORTHO05D006113 4.9e-20 101.7 140 47.9
Sed0013210 Sechium edule HOM05D000656 ORTHO05D006113 8.3e-20 100.9 139 49.6
ClCG02G009530 Citrullus lanatus HOM05D000656 ORTHO05D006113 1.1e-19 100.5 132 49.2
Lalb_Chr04g0247161 Lupinus albus HOM05D000656 ORTHO05D006113 1.4e-19 100.1 90 61.1
Eucgr.K00711 Eucalyptus grandis HOM05D000656 ORTHO05D006113 2.4e-19 99.4 139 47.5
TPR.G15071 Trifolium pratense HOM05D000656 ORTHO05D006113 2.4e-19 99.4 82 67.1
Atru.chr6.3326 Acer truncatum HOM05D000656 ORTHO05D006113 3.2e-19 99.0 140 47.9
CAN.G897.5 Capsicum annuum HOM05D000656 ORTHO05D006113 3.2e-19 99.0 140 48.6
Cc05_g02420 Coffea canephora HOM05D000656 ORTHO05D006113 3.2e-19 99.0 139 51.1
MELO3C019361.2 Cucumis melo HOM05D000656 ORTHO05D006113 3.2e-19 99.0 138 47.1
Phvul.008G287700 Phaseolus vulgaris HOM05D000656 ORTHO05D006113 3.2e-19 99.0 138 47.8
TWI36G0120 Tripterygium wilfordii HOM05D000656 ORTHO05D006113 3.2e-19 99.0 138 47.1
Lsat_1_v5_gn_5_124680 Lactuca sativa HOM05D000656 ORTHO05D006113 4.1e-19 98.6 141 48.2
Actinidia10782 Actinidia chinensis HOM05D000656 ORTHO05D006113 5.4e-19 98.2 142 49.3
Glyma.02G307700 Glycine max HOM05D000656 ORTHO05D006113 5.4e-19 98.2 138 46.4
Gohir.A07G175700 Gossypium hirsutum HOM05D000656 ORTHO05D006113 5.4e-19 98.2 132 46.2
Manes.12G060500 Manihot esculenta HOM05D000656 ORTHO05D006113 5.4e-19 98.2 140 50.0
CAN.G294.13 Capsicum annuum HOM05D000656 ORTHO05D006113 7.0e-19 97.8 144 47.9
Duzib133G0215 Durio zibethinus HOM05D000656 ORTHO05D006113 7.0e-19 97.8 136 50.0
Ca_06475_v3 Cicer arietinum L. HOM05D000656 ORTHO05D006113 9.2e-19 97.4 139 45.3
PGR142G1112 Punica granatum HOM05D000656 ORTHO05D006113 9.2e-19 97.4 129 50.4
THA.LOC104808858 Tarenaya hassleriana HOM05D000656 ORTHO05D006113 9.2e-19 97.4 89 62.9
Aa31sc53G20 Aethionema arabicum HOM05D007186 ORTHO05D006113 1.6e-18 96.7 105 57.1
Gohir.A07G086500 Gossypium hirsutum HOM05D000656 ORTHO05D006113 1.6e-18 96.7 72 66.7
Gohir.D07G091400 Gossypium hirsutum HOM05D000656 ORTHO05D006113 1.6e-18 96.7 72 66.7
Gorai.001G097900 Gossypium raimondii HOM05D000656 ORTHO05D006113 1.6e-18 96.7 72 66.7
LjContig00081g0023258 Lotus japonicus HOM05D000656 ORTHO05D006113 2.7e-18 95.9 142 45.8
Lalb_Chr17g0349251 Lupinus albus HOM05D000656 ORTHO05D006113 2.7e-18 95.9 139 47.5
Oeu059046.1 Olea europaea HOM05D000656 ORTHO05D006113 3.5e-18 95.5 141 44.7
THA.LOC104815351 Tarenaya hassleriana HOM05D000656 ORTHO05D006113 3.5e-18 95.5 112 55.4
Dinv05852 Davidia involucrata HOM05D000656 ORTHO05D006113 4.6e-18 95.1 68 69.1
Duzib138G1190 Durio zibethinus HOM05D000656 ORTHO05D006113 6.0e-18 94.7 83 59.0
FAN05G2981 Fragaria x ananassa HOM05D000656 ORTHO05D006113 6.0e-18 94.7 138 47.8
Solyc07g048090.2 Solanum lycopersicum HOM05D000656 ORTHO05D006113 6.0e-18 94.7 140 46.4
Sopen07g024510 Solanum pennellii HOM05D000656 ORTHO05D006113 6.0e-18 94.7 140 46.4
Gohir.D07G173900 Gossypium hirsutum HOM05D000656 ORTHO05D006113 7.8e-18 94.4 74 62.2
Peaxi162Scf02035g00031 Petunia axillaris HOM05D000656 ORTHO05D006113 1.3e-17 93.6 140 44.3
FAN02G1099 Fragaria x ananassa HOM05D000656 ORTHO05D006113 1.7e-17 93.2 137 47.4
Potri.014G162900 Populus trichocarpa HOM05D000656 ORTHO05D006113 2.3e-17 92.8 129 48.1
Gohir.A08G049700 Gossypium hirsutum HOM05D000656 ORTHO05D006113 3.9e-17 92.0 141 42.6
PGSC0003DMG400006160 Solanum tuberosum HOM05D000656 ORTHO05D006113 3.9e-17 92.0 139 44.6
Nn1g07389 Nelumbo nucifera HOM05D000656 ORTHO05D006113 5.0e-17 91.7 141 45.4
Aqoxy1G02835 Aquilegia oxysepala HOM05D000656 ORTHO05D006113 8.6e-17 90.9 138 44.9
Gorai.004G061700 Gossypium raimondii HOM05D000656 ORTHO05D006113 8.6e-17 90.9 83 56.6
Medtr5g098060 Medicago truncatula HOM05D000656 ORTHO05D006113 8.6e-17 90.9 139 45.3
Nn1g03310 Nelumbo nucifera HOM05D000656 ORTHO05D006113 8.6e-17 90.9 131 46.6
Nitab4.5_0004215g0040 Nicotiana tabacum HOM05D000656 ORTHO05D006113 8.6e-17 90.9 141 44.7
Nitab4.5_0008167g0080 Nicotiana tabacum HOM05D000656 ORTHO05D006113 8.6e-17 90.9 97 57.7
Sc20g0003840 Simmondsia chinensis HOM05D000656 ORTHO05D006113 8.6e-17 90.9 70 62.9
AUR62017551 Chenopodium quinoa HOM05D000656 ORTHO05D006113 1.1e-16 90.5 120 50.8
Migut.H01295 Erythranthe guttata HOM05D000656 ORTHO05D006113 1.1e-16 90.5 116 46.6
Eucgr.A01074 Eucalyptus grandis HOM05D000656 ORTHO05D006113 1.5e-16 90.1 138 43.5
Nitab4.5_0004358g0060 Nicotiana tabacum HOM05D000656 ORTHO05D006113 1.9e-16 89.7 141 43.3
MBI16_g31715_MAGBIO Magnolia biondii HOM05D000656 ORTHO05D006113 2.5e-16 89.4 81 60.5
Nitab4.5_0001229g0090 Nicotiana tabacum HOM05D000656 ORTHO05D006113 2.5e-16 89.4 147 44.9
Potri.002G223300 Populus trichocarpa HOM05D000656 ORTHO05D006113 2.5e-16 89.4 128 46.1
Ciclev10016312m.g Citrus clementina HOM05D000656 ORTHO05D006113 3.3e-16 89.0 138 47.1
Duzib012G0001 Durio zibethinus HOM05D000656 ORTHO05D006113 3.3e-16 89.0 140 46.4
Duzib133G0467 Durio zibethinus HOM05D000656 ORTHO05D006113 3.3e-16 89.0 140 46.4
MBI19_g06145_MAGBIO Magnolia biondii HOM05D000656 ORTHO05D006113 3.3e-16 89.0 140 43.6
PGR042G2726 Punica granatum HOM05D000656 ORTHO05D006113 3.3e-16 89.0 134 46.3
Gohir.D08G059800 Gossypium hirsutum HOM05D000656 ORTHO05D006113 4.3e-16 88.6 83 55.4
Ah.01g001750 Amaranthus hybridus HOM05D001152 ORTHO05D000967 5.6e-16 88.2 72 63.9
Oeu029949.1 Olea europaea HOM05D000656 ORTHO05D006113 5.6e-16 88.2 68 61.8
PGSC0003DMG400028821 Solanum tuberosum HOM05D000656 ORTHO05D006113 5.6e-16 88.2 144 44.4
EL10Ac3g05656 Beta vulgaris HOM05D000656 ORTHO05D006113 7.3e-16 87.8 138 44.2
Gorai.001G194400 Gossypium raimondii HOM05D000656 ORTHO05D006113 7.3e-16 87.8 132 43.2
PSO541G2730 Papaver somniferum HOM05D000656 ORTHO05D006113 9.5e-16 87.4 120 45.0
Manes.13G063928 Manihot esculenta HOM05D000656 ORTHO05D006113 1.2e-15 87.0 125 43.2
Thhalv10002647m.g Eutrema salsugineum HOM05D000656 ORTHO05D006113 1.6e-15 86.7 68 64.7
Hma1.2p1_0133F.1_g061010 Hydrangea macrophylla HOM05D000656 ORTHO05D006113 1.6e-15 86.7 125 46.4
MSTRG.12230 Avicennia marina HOM05D000656 ORTHO05D006113 2.1e-15 86.3 68 58.8
Psat2g003680 Pisum sativum HOM05D000656 ORTHO05D006113 2.1e-15 86.3 82 57.3
AL3G42370 Arabidopsis lyrata HOM05D000656 ORTHO05D006113 4.7e-15 85.1 68 63.2
COL.COLO4_35983 Corchorus olitorius HOM05D000656 ORTHO05D006113 4.7e-15 85.1 72 59.7
PSO675G1579 Papaver somniferum HOM05D000656 ORTHO05D006113 4.7e-15 85.1 120 45.0
BcaB08g34486 Brassica carinata HOM05D000656 ORTHO05D006113 6.2e-15 84.7 107 49.5
Sabra14G0124500 Salix brachista HOM05D001236 ORTHO05D001090 6.2e-15 84.7 76 59.2
Sp3g23390 Schrenkiella parvula HOM05D000656 ORTHO05D006113 1.1e-14 84.0 104 49.0
AT2G04780 Arabidopsis thaliana HOM05D000656 ORTHO05D006113 1.4e-14 83.6 104 51.9
BcaC01g03190 Brassica carinata HOM05D000656 ORTHO05D006113 2.3e-14 82.8 68 61.8
BcaC01g03191 Brassica carinata HOM05D000656 ORTHO05D006113 2.3e-14 82.8 68 61.8
A03p44420 Brassica napus HOM05D000656 ORTHO05D006113 2.3e-14 82.8 68 61.8
C03p55050 Brassica napus HOM05D000656 ORTHO05D006113 2.3e-14 82.8 68 61.8
BolC3t17780H Brassica oleracea HOM05D000656 ORTHO05D006113 2.3e-14 82.8 68 61.8
BraA03t13575Z Brassica rapa HOM05D000656 ORTHO05D006113 2.3e-14 82.8 68 61.8
Rhsim04G0045400 Rhododendron simsii HOM05D000656 ORTHO05D006113 6.8e-14 81.3 143 41.3
CARHR102750 Cardamine hirsuta HOM05D000656 ORTHO05D006113 8.9e-14 80.9 104 47.1
arahy.Tifrunner.gnm1.ann1.FSAY7I Arachis hypogaea HOM05D000656 ORTHO05D006113 2.0e-13 79.7 133 42.1
arahy.Tifrunner.gnm1.ann1.4QQ8RN Arachis hypogaea HOM05D000656 ORTHO05D006113 2.6e-13 79.3 125 40.8
Os08g0502400 Oryza sativa ssp. japonica HOM05D000656 ORTHO05D006113 2.6e-13 79.3 97 51.5
Carub.0003s2637 Capsella rubella HOM05D000656 ORTHO05D006113 4.9e-12 75.1 106 47.2
SGA_v2.0_scaffold159G37530 Striga asiatica HOM05D000656 ORTHO05D006113 8.3e-12 74.3 106 48.1
CDE04G3565 Ceratophyllum demersum HOM05D000656 ORTHO05D006113 4.1e-11 72.0 138 37.7
ATR0661G277 Amborella trichopoda HOM05D000656 ORTHO05D006113 2.7e-10 69.3 137 35.0
CDE07G0236 Ceratophyllum demersum HOM05D000656 ORTHO05D006113 1.7e-09 66.6 138 36.2
Zm00001eb199660 Zea mays HOM05D000656 ORTHO05D006113 5.1e-09 65.1 72 52.8
Zm00001eb316460 Zea mays HOM05D000656 ORTHO05D006113 4.3e-08 62.0 74 45.9
FAN25G0853 Fragaria x ananassa HOM05D000588 ORTHO05D004275 9.5e-08 60.8 113 42.5
Manes.03G068114 Manihot esculenta HOM05D000656 ORTHO05D000871 9.5e-08 60.8 78 48.7
HPP92_026722 Vanilla planifolia HOM05D000656 ORTHO05D006113 9.5e-08 60.8 105 41.9
FvH4_3g36000 Fragaria vesca HOM05D000588 ORTHO05D004275 1.2e-07 60.5 113 41.6
Manes.03G074600 Manihot esculenta HOM05D000656 ORTHO05D000871 1.2e-07 60.5 78 47.4
Rhsim04G0043800 Rhododendron simsii HOM05D000656 ORTHO05D006113 1.2e-07 60.5 70 44.3
SEGI_06329 Sequoiadendron giganteum HOM05D000656 ORTHO05D000871 1.2e-07 60.5 93 40.9
FAN21G1353 Fragaria x ananassa HOM05D000588 ORTHO05D004275 1.6e-07 60.1 113 41.6
HPP92_017973 Vanilla planifolia HOM05D000656 ORTHO05D006113 1.6e-07 60.1 105 41.9
Manes.03G068416 Manihot esculenta HOM05D000656 ORTHO05D000871 2.1e-07 59.7 78 47.4
Manes.11G143600 Manihot esculenta HOM05D000656 ORTHO05D000871 2.1e-07 59.7 78 47.4
ATR0665G173 Amborella trichopoda HOM05D000588 ORTHO05D004275 2.8e-07 59.3 64 53.1
FAN11G0300 Fragaria x ananassa HOM05D000588 ORTHO05D004275 4.7e-07 58.5 113 40.7
FAN16G3196 Fragaria x ananassa HOM05D000588 ORTHO05D004275 4.7e-07 58.5 113 41.6
Ciclev10029172m.g Citrus clementina HOM05D000656 ORTHO05D000871 6.2e-07 58.2 90 42.2
Os04g0472200 Oryza sativa ssp. japonica HOM05D000656 ORTHO05D006113 8.1e-07 57.8 131 35.1
Zm00001eb424730 Zea mays HOM05D000656 ORTHO05D006113 1.1e-06 57.4 94 41.5
Rhsim04G0045000 Rhododendron simsii HOM05D000656 ORTHO05D006113 1.4e-06 57.0 90 40.0
Os09g0482780 Oryza sativa ssp. japonica HOM05D000656 ORTHO05D006113 2.4e-06 56.2 85 44.7
Potri.013G151366 Populus trichocarpa HOM05D000656 ORTHO05D000871 3.1e-06 55.8 72 45.8
C03p12800 Brassica napus HOM05D000656 ORTHO05D000871 4.0e-06 55.5 60 51.7
CSS0018891 Camellia sinensis var. sinensis HOM05D000656 ORTHO05D000871 4.0e-06 55.5 88 39.8
Potri.013G151300 Populus trichocarpa HOM05D000656 ORTHO05D000871 5.2e-06 55.1 72 45.8
Manes.13G141200 Manihot esculenta HOM05D000656 ORTHO05D000871 6.8e-06 54.7 65 43.1
Ciclev10030205m.g Citrus clementina HOM05D000656 ORTHO05D000871 8.9e-06 54.3 62 48.4
Oeu025529.1 Olea europaea HOM05D000656 ORTHO05D000871 8.9e-06 54.3 79 41.8


User provided reference genes

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