Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA238G4795 Erigeron canadensis HOM05D001886 ORTHO05D005666 2.7e-239 831.6 432 100.0
HanXRQChr07g0196201 Helianthus annuus HOM05D001886 ORTHO05D005666 2.0e-218 762.3 437 91.1
Lsat_1_v5_gn_2_111601 Lactuca sativa HOM05D001886 ORTHO05D005666 4.5e-210 734.6 432 88.7
Hma1.2p1_1481F.1_g286150 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 9.5e-168 594.0 412 73.3
DCAR_009246 Daucus carota HOM05D001886 ORTHO05D005666 4.0e-166 588.6 427 70.3
QL05p010709 Quercus lobata HOM05D001886 ORTHO05D005666 3.7e-164 582.0 431 71.9
QL07p047480 Quercus lobata HOM05D001886 ORTHO05D005666 8.3e-164 580.9 431 71.9
CSS0014030 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.0e-161 573.9 429 71.8
Cfa017420 Carpinus fangiana HOM05D001886 ORTHO05D005666 2.3e-161 572.8 430 71.6
Sabra06G0063300 Salix brachista HOM05D001886 ORTHO05D005666 2.3e-161 572.8 431 68.7
CiPaw.09G189500 Carya illinoinensis HOM05D001886 ORTHO05D005666 6.6e-161 571.2 430 70.5
Solyc09g010470.3 Solanum lycopersicum HOM05D001886 ORTHO05D005666 3.3e-160 568.9 432 67.8
PGSC0003DMG400008924 Solanum tuberosum HOM05D001886 ORTHO05D005666 3.3e-160 568.9 432 68.1
GSVIVG01025523001 Vitis vinifera HOM05D001886 ORTHO05D005666 4.3e-160 568.5 429 68.5
Sopen09g005210 Solanum pennellii HOM05D001886 ORTHO05D005666 1.6e-159 566.6 432 67.4
CSS0002297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 2.1e-159 566.2 432 69.0
TAR633G2154 Trochodendron aralioides HOM05D001886 ORTHO05D005666 2.1e-159 566.2 429 70.2
Aqoxy2G02037 Aquilegia oxysepala HOM05D001886 ORTHO05D005666 2.8e-159 565.8 416 70.0
SalBow3G2787 Salvia bowleyana HOM05D001886 ORTHO05D005666 2.8e-159 565.8 432 68.8
CANSAT35G0217 Cannabis sativa HOM05D001886 ORTHO05D005666 3.6e-159 565.5 430 69.5
TWI74G1177 Tripterygium wilfordii HOM05D001886 ORTHO05D005666 8.0e-159 564.3 429 69.7
Haze_20750 Corylus avellana HOM05D001886 ORTHO05D005666 1.0e-158 563.9 445 69.2
MD04G1123400 Malus domestica HOM05D001886 ORTHO05D005666 3.1e-158 562.4 433 68.1
Potri.006G083700 Populus trichocarpa HOM05D001886 ORTHO05D005666 6.8e-158 561.2 432 68.3
Ciclev10011745m.g Citrus clementina HOM05D001886 ORTHO05D005666 8.9e-158 560.8 429 68.3
Prupe.6G251100 Prunus persica HOM05D001886 ORTHO05D005666 4.4e-157 558.5 428 68.9
CSS0019310 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 9.8e-157 557.4 429 70.6
Carub.0003s0857 Capsella rubella HOM05D001886 ORTHO05D005666 1.3e-156 557.0 431 67.5
CAN.G97.10 Capsicum annuum HOM05D001886 ORTHO05D005666 1.3e-156 557.0 434 66.8
Thecc.05G043700 Theobroma cacao HOM05D001886 ORTHO05D005666 2.2e-156 556.2 428 68.5
AT3G09470 Arabidopsis thaliana HOM05D001886 ORTHO05D005666 3.2e-155 552.4 433 67.0
MSTRG.5681 Avicennia marina HOM05D001886 ORTHO05D005666 4.1e-155 552.0 432 66.9
Manes.09G087100 Manihot esculenta HOM05D001886 ORTHO05D005666 4.1e-155 552.0 429 68.3
Duzib093G1847 Durio zibethinus HOM05D001886 ORTHO05D005666 2.0e-154 549.7 428 68.0
RcHm_v2.0_Chr3g0467171 Rosa chinensis HOM05D001886 ORTHO05D005666 2.7e-154 549.3 429 68.1
Migut.J00351 Erythranthe guttata HOM05D001886 ORTHO05D005666 3.5e-154 548.9 429 68.1
AL3G20650 Arabidopsis lyrata HOM05D001886 ORTHO05D005666 4.6e-154 548.5 431 66.6
Gohir.A09G158000 Gossypium hirsutum HOM05D001886 ORTHO05D005666 1.3e-153 547.0 429 67.1
MD12G1139300 Malus domestica HOM05D001886 ORTHO05D005666 1.3e-153 547.0 433 66.5
Thhalv10020764m.g Eutrema salsugineum HOM05D001886 ORTHO05D005666 2.3e-153 546.2 429 66.9
PGR004G0312 Punica granatum HOM05D001886 ORTHO05D005666 2.3e-153 546.2 430 67.2
Sp3g07840 Schrenkiella parvula HOM05D001886 ORTHO05D005666 2.3e-153 546.2 431 66.4
Gorai.006G174800 Gossypium raimondii HOM05D001886 ORTHO05D005666 5.0e-153 545.0 429 67.6
Nitab4.5_0002077g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 5.0e-153 545.0 432 65.7
Aa31LG3G1960 Aethionema arabicum HOM05D001886 ORTHO05D005666 1.1e-152 543.9 430 66.3
COL.COLO4_14849 Corchorus olitorius HOM05D001886 ORTHO05D005666 1.1e-152 543.9 428 66.1
Hma1.2p1_1707F.1_g298500 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 3.3e-152 542.3 446 65.5
Gohir.D09G153300 Gossypium hirsutum HOM05D001886 ORTHO05D005666 4.3e-152 542.0 429 67.1
PGR004G0538 Punica granatum HOM05D001886 ORTHO05D005666 1.2e-151 540.4 430 66.5
Eucgr.K03155 Eucalyptus grandis HOM05D001886 ORTHO05D005666 3.6e-151 538.9 410 67.8
MBI14_g24315_MAGBIO Magnolia biondii HOM05D001886 ORTHO05D005666 3.6e-151 538.9 427 67.0
FAN05G4892 Fragaria x ananassa HOM05D001886 ORTHO05D005666 1.1e-150 537.3 431 66.4
Atru.chr8.1947 Acer truncatum HOM05D001886 ORTHO05D005666 1.4e-150 537.0 430 66.5
FvH4_6g14211 Fragaria vesca HOM05D001886 ORTHO05D005666 1.4e-150 537.0 432 66.4
Lj2A99T56 Lonicera japonica HOM05D001886 ORTHO05D005666 1.4e-150 537.0 369 74.8
Sc20g0004960 Simmondsia chinensis HOM05D001886 ORTHO05D005666 2.3e-150 536.2 429 63.9
C05p58560 Brassica napus HOM05D001886 ORTHO05D005666 4.4e-149 531.9 434 65.4
BolC5t34506H Brassica oleracea HOM05D001886 ORTHO05D005666 1.7e-148 530.0 434 65.2
PSO339G5853 Papaver somniferum HOM05D001886 ORTHO05D005666 1.7e-148 530.0 433 65.8
BcaC05g29675 Brassica carinata HOM05D001886 ORTHO05D005666 3.7e-148 528.9 433 65.4
A05p39530 Brassica napus HOM05D001886 ORTHO05D005666 1.1e-147 527.3 434 65.4
Hma1.2p1_1065F.1_g253710 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 1.1e-147 527.3 439 65.8
BraA05t22734Z Brassica rapa HOM05D001886 ORTHO05D005666 4.1e-147 525.4 434 65.2
THA.LOC104823252 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 4.1e-147 525.4 427 65.3
Oeu036169.1 Olea europaea HOM05D001886 ORTHO05D005666 2.1e-146 523.1 428 62.6
Dinv35628 Davidia involucrata HOM05D001886 ORTHO05D005666 4.6e-146 521.9 423 68.3
Oeu036166.1 Olea europaea HOM05D001886 ORTHO05D005666 4.6e-146 521.9 431 64.3
Hund10629 Selenicereus undatus HOM05D001886 ORTHO05D005666 1.0e-145 520.8 428 63.6
TPR.G21472 Trifolium pratense HOM05D002608 ORTHO05D005666 5.1e-145 518.5 408 67.6
ClCG00G003200 Citrullus lanatus HOM05D001886 ORTHO05D005666 6.6e-145 518.1 432 63.9
AUR62041035 Chenopodium quinoa HOM05D001886 ORTHO05D005666 8.6e-145 517.7 429 64.1
ClCG10G020980 Citrullus lanatus HOM05D001886 ORTHO05D005666 8.6e-145 517.7 432 63.9
PSO339G4978 Papaver somniferum HOM05D001886 ORTHO05D005666 5.6e-144 515.0 429 65.3
PSO339G5613 Papaver somniferum HOM05D001886 ORTHO05D005666 5.6e-144 515.0 429 65.3
MELO3C009272.2 Cucumis melo HOM05D001886 ORTHO05D005666 7.3e-144 514.6 429 63.6
Lj1g0000746 Lotus japonicus HOM05D001886 ORTHO05D005666 9.5e-144 514.2 436 64.0
Ca_08782_v3 Cicer arietinum L. HOM05D001886 ORTHO05D005666 1.2e-143 513.8 429 64.3
CsaV3_3G035030 Cucumis sativus L. HOM05D001886 ORTHO05D005666 1.2e-143 513.8 429 63.2
Lalb_Chr01g0019241 Lupinus albus HOM05D001886 ORTHO05D005666 2.8e-143 512.7 428 63.8
Sed0005778 Sechium edule HOM05D001886 ORTHO05D005666 6.2e-143 511.5 412 65.5
THA.LOC104816289 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 8.1e-143 511.1 428 64.3
Medtr7g099910 Medicago truncatula HOM05D001886 ORTHO05D005666 2.3e-142 509.6 430 64.4
Cc06_g02890 Coffea canephora HOM05D001886 ORTHO05D005666 3.4e-141 505.8 436 60.8
Prupe.6G251000 Prunus persica HOM05D001886 ORTHO05D005666 4.4e-141 505.4 412 65.3
Oeu060049.1 Olea europaea HOM05D001886 ORTHO05D005666 7.5e-141 504.6 420 66.2
PSO648G0053 Papaver somniferum HOM05D001886 ORTHO05D005666 9.9e-141 504.2 428 63.6
ATR0559G352 Amborella trichopoda HOM05D001886 ORTHO05D005666 1.3e-140 503.8 411 64.5
Medtr7g099890 Medicago truncatula HOM05D001886 ORTHO05D005666 1.3e-140 503.8 426 64.3
Ah.12g062350 Amaranthus hybridus HOM05D001886 ORTHO05D005666 1.7e-140 503.4 432 61.6
Lj1g0014450 Lotus japonicus HOM05D001886 ORTHO05D005666 4.9e-140 501.9 434 61.1
arahy.Tifrunner.gnm1.ann1.LM62V2 Arachis hypogaea HOM05D001886 ORTHO05D005666 9.2e-139 497.7 432 62.0
FAN09G1438 Fragaria x ananassa HOM05D001886 ORTHO05D005666 1.7e-137 493.4 514 55.3
FAN09G0883 Fragaria x ananassa HOM05D002354 ORTHO05D005666 6.6e-137 491.5 427 61.1
RcHm_v2.0_Chr3g0467181 Rosa chinensis HOM05D001886 ORTHO05D005666 6.6e-137 491.5 432 60.9
FvH4_6g14220 Fragaria vesca HOM05D001886 ORTHO05D005666 5.6e-136 488.4 434 60.8
Medtr7g099870 Medicago truncatula HOM05D001886 ORTHO05D005666 9.5e-136 487.6 418 62.7
MD04G1123300 Malus domestica HOM05D001886 ORTHO05D005666 1.2e-135 487.3 426 62.0
Psat3g049200 Pisum sativum HOM05D001886 ORTHO05D005666 3.6e-135 485.7 414 64.5
FAN14G0919 Fragaria x ananassa HOM05D001886 ORTHO05D005666 4.7e-135 485.3 434 60.6
Nn2g10428 Nelumbo nucifera HOM05D001886 ORTHO05D005666 8.1e-135 484.6 428 62.1
Rhsim04G0155900 Rhododendron simsii HOM05D001886 ORTHO05D005666 1.1e-134 484.2 472 59.3
Glyma.03G172100 Glycine max HOM05D001886 ORTHO05D005666 1.4e-134 483.8 436 61.2
Peaxi162Scf00039g01233 Petunia axillaris HOM05D001886 ORTHO05D005666 1.4e-134 483.8 426 60.3
Glyma.19G173000 Glycine max HOM05D001886 ORTHO05D005666 1.8e-134 483.4 430 62.1
Phvul.001G169800 Phaseolus vulgaris HOM05D001886 ORTHO05D005666 4.0e-134 482.3 436 61.7
unitig_578.g15699 Utricularia gibba HOM05D001886 ORTHO05D005666 4.0e-134 482.3 436 59.2
Sed0018380 Sechium edule HOM05D001886 ORTHO05D005666 5.8e-133 478.4 385 62.6
Lj1g0019565 Lotus japonicus HOM05D001886 ORTHO05D005666 9.9e-133 477.6 407 62.4
VMungo1383G3275 Vigna mungo HOM05D001886 ORTHO05D005666 3.8e-132 475.7 429 61.1
Lalb_Chr20g0113251 Lupinus albus HOM05D001886 ORTHO05D005666 5.1e-129 465.3 431 59.4
FAN09G1880 Fragaria x ananassa HOM05D001886 ORTHO05D005666 1.3e-127 460.7 427 58.8
Os12g0566900 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 2.1e-127 459.9 406 60.1
arahy.Tifrunner.gnm1.ann1.QN2KEZ Arachis hypogaea HOM05D001886 ORTHO05D005666 1.4e-126 457.2 432 58.8
Zm00001eb028780 Zea mays HOM05D001886 ORTHO05D005666 2.6e-125 453.0 406 60.6
CSS0035971 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 9.3e-123 444.5 431 58.9
HPP92_018059 Vanilla planifolia HOM05D001886 ORTHO05D005666 1.7e-121 440.3 436 57.8
Actinidia05302 Actinidia chinensis HOM05D001886 ORTHO05D005666 2.5e-120 436.4 432 58.3
CDE07G1313 Ceratophyllum demersum HOM05D001886 ORTHO05D005666 4.3e-120 435.6 429 57.1
AUR62041759 Chenopodium quinoa HOM05D001886 ORTHO05D005666 1.1e-118 431.0 427 56.4
vmacro08662 Vaccinium macrocarpon HOM05D001886 ORTHO05D005666 3.2e-115 419.5 513 50.9
Dinv37200 Davidia involucrata HOM05D001886 ORTHO05D005666 5.4e-115 418.7 318 70.4
Nitab4.5_0003267g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 2.3e-113 413.3 431 55.5
SGA_v2.0_scaffold126G33811 Striga asiatica HOM05D001886 ORTHO05D005666 1.1e-107 394.4 429 52.4
Lj2A2G29 Lonicera japonica HOM05D001886 ORTHO05D005666 2.1e-106 390.2 381 60.6
EL10As1g23100 Beta vulgaris HOM05D001886 ORTHO05D005666 2.6e-101 373.2 294 64.6
TPR.G21468 Trifolium pratense HOM05D001886 ORTHO05D005666 5.8e-101 372.1 344 59.3
Psat3g049040 Pisum sativum HOM05D001886 ORTHO05D005666 1.3e-97 360.9 300 63.3
SEGI_05360 Sequoiadendron giganteum HOM05D001886 ORTHO05D005666 1.3e-92 344.4 282 61.0
Mapoly0179s0003 Marchantia polymorpha HOM05D001886 ORTHO05D005666 1.1e-88 331.3 425 43.8
Pp3c8_1230 Physcomitrium patens HOM05D001886 ORTHO05D005666 4.8e-87 325.9 425 43.1
CARHR083880 Cardamine hirsuta HOM05D001886 ORTHO05D005666 2.7e-82 310.1 252 64.7
Migut.O00944 Erythranthe guttata HOM05D001886 ORTHO05D005666 7.4e-72 275.4 321 51.4
Gohir.D04G119800 Gossypium hirsutum HOM05D001886 ORTHO05D005666 6.3e-71 272.3 411 45.3
Actinidia13133 Actinidia chinensis HOM05D001886 ORTHO05D005666 5.3e-70 269.2 179 74.3
Actinidia13134 Actinidia chinensis HOM05D001886 ORTHO05D005666 6.5e-68 262.3 202 71.3
CARHR083890 Cardamine hirsuta HOM05D001886 ORTHO05D005666 5.7e-64 249.2 178 69.7
Os12g0566800 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 4.9e-55 219.5 186 57.5
HPP92_018052 Vanilla planifolia HOM05D001886 ORTHO05D005666 4.9e-55 219.5 187 64.7
ATR0559G335 Amborella trichopoda HOM05D001886 ORTHO05D005666 4.7e-50 203.0 171 61.4
CSS0044683 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 5.2e-49 199.5 161 67.1
AagrBONN_evm.TU.Sc2ySwM_362.1966 Anthoceros agrestis HOM05D001886 ORTHO05D005666 4.4e-40 169.9 139 57.6
CSS0017297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 7.5e-40 169.1 147 65.3
MD12G1139200 Malus domestica HOM05D001886 ORTHO05D005666 2.5e-35 154.1 242 42.6
Psat3g053880 Pisum sativum HOM05D000335 ORTHO05D005666 2.8e-34 150.6 120 70.0
BcaC05g29677 Brassica carinata HOM05D001886 ORTHO05D005666 5.1e-28 129.8 112 61.6
MD12G1139100 Malus domestica HOM05D001886 ORTHO05D005666 8.1e-26 122.5 81 70.4
Os12g0567000 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 3.2e-22 110.5 105 53.3
FAN11G3241 Fragaria x ananassa HOM05D001164 ORTHO05D001031 3.1e-17 94.0 79 64.6
FAN02G0854 Fragaria x ananassa HOM05D001886 ORTHO05D005666 1.2e-16 92.0 104 50.0
Lsat_1_v5_gn_7_25540 Lactuca sativa HOM05D001886 ORTHO05D005666 4.4e-16 90.1 53 86.8
AagrBONN_evm.TU.Sc2ySwM_362.1965 Anthoceros agrestis HOM05D001886 ORTHO05D005666 1.9e-14 84.7 113 42.5
Mapoly0174s0006 Marchantia polymorpha HOM05D001886 ORTHO05D005666 3.2e-14 84.0 433 24.0
TAR636G1555 Trochodendron aralioides HOM05D001886 ORTHO05D005666 3.2e-14 84.0 190 34.7
SMO197G0098 Selaginella moellendorffii HOM05D001886 ORTHO05D005666 3.6e-10 70.5 432 25.9
Lsat_1_v5_gn_2_4320 Lactuca sativa HOM05D001886 ORTHO05D005666 4.9e-07 60.1 50 64.0


User provided reference genes

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