Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA238G4729 Erigeron canadensis HOM05D004088 ORTHO05D004736 0.0e+00 1381.7 791 100.0
HanXRQChr14g0430221 Helianthus annuus HOM05D004088 ORTHO05D004736 1.2e-213 747.3 793 55.5
Lsat_1_v5_gn_2_8701 Lactuca sativa HOM05D004088 ORTHO05D004736 1.2e-184 651.0 798 51.3
Lj2C329T10 Lonicera japonica HOM05D004088 ORTHO05D004736 7.6e-123 445.7 846 38.3
Cc09_g07900 Coffea canephora HOM05D004088 ORTHO05D004736 6.9e-108 396.0 862 34.2
Thecc.06G002600 Theobroma cacao HOM05D004088 ORTHO05D004736 8.8e-103 379.0 844 32.9
Dinv10790 Davidia involucrata HOM05D004088 ORTHO05D004736 1.5e-102 378.3 878 34.6
Actinidia32361 Actinidia chinensis HOM05D004088 ORTHO05D004736 6.3e-101 372.9 837 34.4
Actinidia33710 Actinidia chinensis HOM05D004088 ORTHO05D004736 1.1e-100 372.1 873 33.1
Hma1.2p1_0067F.1_g036970 Hydrangea macrophylla HOM05D004088 ORTHO05D004736 3.4e-99 367.1 873 34.1
Peaxi162Scf00395g00111 Petunia axillaris HOM05D004088 ORTHO05D004736 7.7e-99 365.9 877 34.1
Rhsim13G0121800 Rhododendron simsii HOM05D004088 ORTHO05D004736 1.0e-98 365.5 829 33.4
Sopen02g019080 Solanum pennellii HOM05D004088 ORTHO05D004736 2.9e-98 364.0 860 32.6
PGSC0003DMG400021120 Solanum tuberosum HOM05D004088 ORTHO05D004736 1.9e-97 361.3 862 32.7
Potri.011G164400 Populus trichocarpa HOM05D004088 ORTHO05D004736 3.2e-97 360.5 858 32.1
Solyc02g069940.4 Solanum lycopersicum HOM05D004088 ORTHO05D004736 6.1e-96 356.3 860 32.1
Duzib235G1173 Durio zibethinus HOM05D004088 ORTHO05D004736 1.0e-95 355.5 850 32.5
Sopen02g006710 Solanum pennellii HOM05D004088 ORTHO05D004736 2.8e-93 347.4 872 33.6
Migut.H01326 Erythranthe guttata HOM05D004088 ORTHO05D004736 3.7e-93 347.1 863 33.0
GSVIVG01021660001 Vitis vinifera HOM05D004088 ORTHO05D004736 1.8e-92 344.7 840 33.9
PGSC0003DMG400028032 Solanum tuberosum HOM05D004088 ORTHO05D004736 4.1e-92 343.6 862 32.8
CAN.G79.31 Capsicum annuum HOM05D004088 ORTHO05D004736 2.2e-90 337.8 844 32.9
QL05p062418 Quercus lobata HOM05D004088 ORTHO05D004736 2.2e-90 337.8 847 35.9
Sabra11G0140800 Salix brachista HOM05D004088 ORTHO05D004736 8.5e-90 335.9 875 31.1
Atru.chr10.842 Acer truncatum HOM05D004088 ORTHO05D004736 3.6e-88 330.5 868 31.2
Duzib192G0456 Durio zibethinus HOM05D004088 ORTHO05D004736 1.0e-87 328.9 849 31.9
CSS0022324 Camellia sinensis var. sinensis HOM05D004088 ORTHO05D004736 1.4e-87 328.6 853 32.2
COL.COLO4_26840 Corchorus olitorius HOM05D004088 ORTHO05D004736 2.3e-87 327.8 867 34.1
Manes.14G123600 Manihot esculenta HOM05D004088 ORTHO05D004736 2.3e-87 327.8 845 30.7
Cfa000808 Carpinus fangiana HOM05D004088 ORTHO05D004736 3.0e-87 327.4 858 32.4
CANSAT35G2036 Cannabis sativa HOM05D004088 ORTHO05D004736 5.2e-87 326.6 867 31.0
Oeu060307.1 Olea europaea HOM05D004088 ORTHO05D004736 3.3e-86 323.9 815 31.7
ClCG01G025190 Citrullus lanatus HOM05D004088 ORTHO05D004736 4.4e-86 323.6 811 32.3
MD10G1252800 Malus domestica HOM05D004088 ORTHO05D004736 5.7e-86 323.2 897 30.0
Nitab4.5_0001583g0030 Nicotiana tabacum HOM05D004088 ORTHO05D004736 2.2e-85 321.2 830 32.8
Sed0022133 Sechium edule HOM05D004088 ORTHO05D004736 3.7e-85 320.5 838 30.7
TWI75G0217 Tripterygium wilfordii HOM05D004088 ORTHO05D004736 3.7e-85 320.5 864 30.6
Manes.06G068100 Manihot esculenta HOM05D004088 ORTHO05D004736 2.4e-84 317.8 853 31.2
CiPaw.10G109300 Carya illinoinensis HOM05D004088 ORTHO05D004736 7.0e-84 316.2 867 30.8
vmacro03381 Vaccinium macrocarpon HOM05D004088 ORTHO05D004736 7.0e-84 316.2 770 32.3
Oeu058484.1 Olea europaea HOM05D004088 ORTHO05D004736 7.7e-83 312.8 809 31.9
DCAR_003851 Daucus carota HOM05D004088 ORTHO05D004736 2.2e-82 311.2 814 31.8
TAR629G1981 Trochodendron aralioides HOM05D004088 ORTHO05D004736 3.8e-82 310.5 878 33.1
Lalb_Chr18g0058001 Lupinus albus HOM05D004088 ORTHO05D004736 5.0e-82 310.1 846 31.6
MELO3C007071.2 Cucumis melo HOM05D004088 ORTHO05D004736 1.1e-81 308.9 860 30.6
Gohir.A10G004300 Gossypium hirsutum HOM05D004088 ORTHO05D004736 2.5e-81 307.8 851 30.4
Solyc02g024000.4 Solanum lycopersicum HOM05D004088 ORTHO05D004736 5.5e-81 306.6 840 32.7
CsaV3_6G052390 Cucumis sativus L. HOM05D004088 ORTHO05D004736 9.4e-81 305.8 878 30.1
SGA_v2.0_scaffold106G30673 Striga asiatica HOM05D004088 ORTHO05D004736 1.6e-80 305.1 877 31.9
TWI18G0713 Tripterygium wilfordii HOM05D004088 ORTHO05D004736 4.7e-80 303.5 845 29.8
MD05G1272700 Malus domestica HOM05D004088 ORTHO05D004736 3.0e-79 300.8 868 30.4
CiPaw.09G141900 Carya illinoinensis HOM05D004088 ORTHO05D004736 4.0e-79 300.4 874 30.5
MSTRG.14799 Avicennia marina HOM05D004088 ORTHO05D004736 5.2e-79 300.1 853 32.5
Sed0022554 Sechium edule HOM05D004088 ORTHO05D004736 4.4e-78 297.0 857 29.5
Gohir.D10G004300 Gossypium hirsutum HOM05D004088 ORTHO05D004736 1.4e-76 292.0 872 30.0
RcHm_v2.0_Chr5g0016081 Rosa chinensis HOM05D004088 ORTHO05D004736 3.1e-76 290.8 902 28.8
Phvul.006G128000 Phaseolus vulgaris HOM05D004088 ORTHO05D004736 2.0e-75 288.1 862 28.8
arahy.Tifrunner.gnm1.ann1.845J24 Arachis hypogaea HOM05D004088 ORTHO05D004736 3.5e-75 287.3 867 30.2
Prupe.4G090700 Prunus persica HOM05D004088 ORTHO05D004736 3.5e-75 287.3 903 28.9
arahy.Tifrunner.gnm1.ann1.JZ5PNZ Arachis hypogaea HOM05D004088 ORTHO05D004736 1.3e-74 285.4 867 29.4
Lalb_Chr20g0120071 Lupinus albus HOM05D004088 ORTHO05D004736 3.8e-74 283.9 841 29.4
SGA_v2.0_scaffold51G18657 Striga asiatica HOM05D004088 ORTHO05D007693 5.0e-74 283.5 841 30.9
Ciclev10014183m.g Citrus clementina HOM05D004088 ORTHO05D004736 1.1e-73 282.3 938 28.5
Haze_05860 Corylus avellana HOM05D004088 ORTHO05D004736 2.1e-72 278.1 860 30.1
Haze_05865 Corylus avellana HOM05D004088 ORTHO05D004736 2.1e-72 278.1 860 30.1
Potri.001G466800 Populus trichocarpa HOM05D004088 ORTHO05D004736 2.1e-72 278.1 846 29.7
Glyma.09G024600 Glycine max HOM05D004088 ORTHO05D004736 2.7e-72 277.7 860 29.2
Eucgr.E02503 Eucalyptus grandis HOM05D004088 ORTHO05D004736 1.0e-71 275.8 858 30.3
Gorai.011G004700 Gossypium raimondii HOM05D004088 ORTHO05D004736 1.4e-71 275.4 851 30.2
Medtr2g030300 Medicago truncatula HOM05D004088 ORTHO05D004736 1.4e-71 275.4 869 28.1
AUR62035797 Chenopodium quinoa HOM05D004088 ORTHO05D004736 3.0e-71 274.2 802 33.0
Nitab4.5_0001225g0110 Nicotiana tabacum HOM05D004088 ORTHO05D004736 4.0e-71 273.9 759 31.0
FvH4_3g10170 Fragaria vesca HOM05D004088 ORTHO05D004736 3.7e-69 267.3 896 29.0
MBI18_g11295_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 8.3e-69 266.2 838 29.8
THA.LOC104814348 Tarenaya hassleriana HOM05D004088 ORTHO05D004736 1.2e-67 262.3 867 31.1
FAN11G0925 Fragaria x ananassa HOM05D004088 ORTHO05D004736 2.7e-67 261.2 849 29.3
Psat1g167360 Pisum sativum HOM05D004088 ORTHO05D004736 3.5e-67 260.8 893 28.0
Glyma.15G130600 Glycine max HOM05D004088 ORTHO05D004736 7.7e-67 259.6 854 29.3
Sc24g0002610 Simmondsia chinensis HOM05D004088 ORTHO05D004736 1.3e-66 258.8 816 28.8
FAN16G0404 Fragaria x ananassa HOM05D004088 ORTHO05D004736 1.5e-65 255.4 912 27.9
EL10Ac8g19551 Beta vulgaris HOM05D004088 ORTHO05D004736 2.1e-64 251.5 803 28.9
FAN21G0524 Fragaria x ananassa HOM05D004088 ORTHO05D004736 1.8e-63 248.4 902 28.0
Ah.14g086140 Amaranthus hybridus HOM05D002312 ORTHO05D006455 2.3e-63 248.1 766 29.0
Lj6g0019238 Lotus japonicus HOM05D004088 ORTHO05D004736 9.8e-62 242.7 846 29.4
Nn3g20183 Nelumbo nucifera HOM05D004088 ORTHO05D004736 1.3e-61 242.3 883 26.5
TPR.G26329 Trifolium pratense HOM05D004088 ORTHO05D004736 1.7e-61 241.9 875 27.2
Ca_00845_v3 Cicer arietinum L. HOM05D004088 ORTHO05D004736 3.7e-61 240.7 879 27.1
FAN25G3211 Fragaria x ananassa HOM05D004088 ORTHO05D004736 3.7e-61 240.7 854 28.2
VMungo0540G1975 Vigna mungo HOM05D004088 ORTHO05D004736 1.1e-60 239.2 818 30.0
MSTRG.13273 Avicennia marina HOM05D004088 ORTHO05D004736 2.7e-59 234.6 809 28.4
Carub.0004s1642 Capsella rubella HOM05D004088 ORTHO05D004736 1.3e-58 232.3 829 29.8
RcHm_v2.0_Chr5g0016211 Rosa chinensis HOM05D004088 ORTHO05D004736 3.9e-58 230.7 941 26.6
Aqoxy1G01578 Aquilegia oxysepala HOM05D004088 ORTHO05D004736 2.5e-57 228.0 831 26.7
Cpa.g.sc1123.1 Carica papaya HOM05D004088 ORTHO05D004736 2.5e-57 228.0 658 31.0
AT2G34730 Arabidopsis thaliana HOM05D004088 ORTHO05D004736 6.2e-56 223.4 843 30.7
MBI02_g32065_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 9.8e-54 216.1 878 25.9
Sabra16G0316600 Salix brachista HOM05D004088 ORTHO05D004736 6.6e-50 203.4 852 27.0
CARHR128890 Cardamine hirsuta HOM05D004088 ORTHO05D004736 4.3e-49 200.7 815 29.0
PSO541G5923 Papaver somniferum HOM05D004088 ORTHO05D004736 8.1e-48 196.4 681 27.6
AL4G30720 Arabidopsis lyrata HOM05D004088 ORTHO05D004736 2.0e-46 191.8 830 29.6
BolC3t14642H Brassica oleracea HOM05D004088 ORTHO05D004736 5.4e-44 183.7 818 25.3
Aa31LG10G6600 Aethionema arabicum HOM05D004088 ORTHO05D004736 7.1e-44 183.3 831 26.2
Prupe.6G066700 Prunus persica HOM05D004088 ORTHO05D004736 1.2e-43 182.6 787 27.2
Sp4g17030 Schrenkiella parvula HOM05D004088 ORTHO05D004736 6.0e-43 180.3 822 27.5
TAR627G0400 Trochodendron aralioides HOM05D004088 ORTHO05D004736 7.8e-43 179.9 574 27.9
AUR62027558 Chenopodium quinoa HOM05D004088 ORTHO05D004736 1.0e-42 179.5 718 26.0
RcHm_v2.0_Chr5g0016261 Rosa chinensis HOM05D004088 ORTHO05D004736 3.9e-42 177.6 692 28.5
BraA03t11181Z Brassica rapa HOM05D004088 ORTHO05D004736 2.1e-40 171.8 847 28.1
ATR0165G056 Amborella trichopoda HOM05D004088 ORTHO05D004736 1.1e-39 169.5 868 24.3
unitig_61.g26083 Utricularia gibba HOM05D004088 ORTHO05D004736 1.4e-39 169.1 797 25.6
A03p19270 Brassica napus HOM05D004088 ORTHO05D004736 2.6e-38 164.9 837 28.0
CDE03G0099 Ceratophyllum demersum HOM05D004088 ORTHO05D004736 7.6e-38 163.3 796 24.5
PSO675G0514 Papaver somniferum HOM05D004088 ORTHO05D004736 1.6e-35 155.6 710 26.9
C03p22460 Brassica napus HOM05D004088 ORTHO05D004736 5.1e-34 150.6 817 27.1
Thhalv10017542m.g Eutrema salsugineum HOM05D004088 ORTHO05D004736 5.1e-34 150.6 770 23.8
BcaC05g27074 Brassica carinata HOM05D004088 ORTHO05D004736 2.4e-31 141.7 601 27.1
BolC5t31686H Brassica oleracea HOM05D004088 ORTHO05D004736 2.4e-31 141.7 601 27.1
C05p29550 Brassica napus HOM05D004088 ORTHO05D004736 5.2e-31 140.6 601 27.0
HPP92_017711 Vanilla planifolia HOM05D004088 ORTHO05D004736 6.8e-31 140.2 770 24.9
A09p35910 Brassica napus HOM05D004088 ORTHO05D004736 1.2e-30 139.4 625 26.9
BcaB07g32665 Brassica carinata HOM05D004088 ORTHO05D004736 1.7e-29 135.6 593 27.0
Eucgr.E02499 Eucalyptus grandis HOM05D004088 ORTHO05D004736 2.2e-29 135.2 705 25.0
Nitab4.5_0004734g0030 Nicotiana tabacum HOM05D004088 ORTHO05D004736 2.2e-29 135.2 409 29.6
BcaB07g32689 Brassica carinata HOM05D004088 ORTHO05D004736 8.4e-29 133.3 604 27.0
BraA09t39116Z Brassica rapa HOM05D004088 ORTHO05D004736 3.2e-28 131.3 616 25.8
MBI02_g32067_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 2.3e-26 125.2 514 25.9
BcaB07g32691 Brassica carinata HOM05D004088 ORTHO05D004736 3.9e-26 124.4 604 25.7
Prupe.6G009000 Prunus persica HOM05D004088 ORTHO05D004736 2.1e-24 118.6 433 28.4
Sp1g26400 Schrenkiella parvula HOM05D004088 ORTHO05D004736 3.6e-24 117.9 667 26.1
TAR627G0836 Trochodendron aralioides HOM05D004088 ORTHO05D004736 1.2e-22 112.8 158 41.1
CDE06G1544 Ceratophyllum demersum HOM05D004088 ORTHO05D004736 7.6e-22 110.2 410 26.1
Os12g0612300 Oryza sativa ssp. japonica HOM05D004088 ORTHO05D004736 2.9e-21 108.2 630 24.3
SHI20695 Sapria himalayana HOM05D004088 ORTHO05D004736 6.4e-21 107.1 692 23.0
Aa31LG6G11780 Aethionema arabicum HOM05D004088 ORTHO05D004736 8.4e-21 106.7 710 22.4
Carub.0001s2877 Capsella rubella HOM05D004088 ORTHO05D004736 4.2e-20 104.4 594 24.6
HPP92_026552 Vanilla planifolia HOM05D004088 ORTHO05D004736 5.4e-20 104.0 739 21.8
BcaC01g05766 Brassica carinata HOM05D004088 ORTHO05D004736 7.9e-19 100.1 598 23.1
Nitab4.5_0002819g0030 Nicotiana tabacum HOM05D004088 ORTHO05D004736 1.0e-18 99.8 292 29.8
Dinv01743 Davidia involucrata HOM05D004088 ORTHO05D004736 3.9e-18 97.8 126 46.8
Zm00001eb299950 Zea mays HOM05D004088 ORTHO05D004736 1.5e-17 95.9 690 22.5
Dinv01742 Davidia involucrata HOM05D004088 ORTHO05D004736 1.9e-17 95.5 278 33.1
CDE04G2970 Ceratophyllum demersum HOM05D004088 ORTHO05D004736 3.3e-17 94.7 584 22.4
MBI02_g16954_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 2.8e-16 91.7 658 21.6
Zm00001eb420620 Zea mays HOM05D004088 ORTHO05D004736 3.6e-16 91.3 691 22.1
Os09g0133800 Oryza sativa ssp. japonica HOM05D004088 ORTHO05D004736 4.0e-15 87.8 579 22.5
Os03g0784600 Oryza sativa ssp. japonica HOM05D004088 ORTHO05D004736 3.4e-14 84.7 377 26.0
Zm00001eb136010 Zea mays HOM05D004088 ORTHO05D004736 1.4e-12 79.3 596 24.0
Os07g0147800 Oryza sativa ssp. japonica HOM05D004088 ORTHO05D004736 4.2e-12 77.8 677 21.0
Prupe.6G009100 Prunus persica HOM05D004088 ORTHO05D004736 9.3e-12 76.6 293 28.3
CDE12G0022 Ceratophyllum demersum HOM05D000617 ORTHO05D004736 2.1e-08 65.5 265 25.3
Ciclev10033298m.g Citrus clementina HOM05D007562 ORTHO05D009721 2.0e-06 58.9 311 22.8
TAR629G1307 Trochodendron aralioides HOM05D007562 ORTHO05D009721 4.5e-06 57.8 192 25.0
CDE12G0038 Ceratophyllum demersum HOM05D004088 ORTHO05D004736 7.6e-06 57.0 319 22.6


User provided reference genes

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