Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA238G4173 Erigeron canadensis HOM05D021178 ORTHO05D025313 4.2e-139 498.0 255 100.0
Lsat_1_v5_gn_2_127320 Lactuca sativa HOM05D021178 ORTHO05D025313 9.8e-72 274.2 254 57.5
HanXRQChr13g0391751 Helianthus annuus HOM05D021178 ORTHO05D025313 1.6e-69 266.9 253 59.3
Lsat_1_v5_gn_2_127560 Lactuca sativa HOM05D021178 ORTHO05D025313 2.7e-69 266.2 258 57.4
HanXRQChr14g0461021 Helianthus annuus HOM05D021178 ORTHO05D025313 3.9e-68 262.3 253 57.3
MSTRG.7907 Avicennia marina HOM05D000410 ORTHO05D003410 3.4e-08 63.2 56 44.6
Carub.0001s3578 Capsella rubella HOM05D000410 ORTHO05D007231 5.8e-08 62.4 137 29.2
Oeu052001.1 Olea europaea HOM05D000410 ORTHO05D001514 7.6e-08 62.0 49 46.9
QL03p059486 Quercus lobata HOM05D000410 ORTHO05D003410 1.3e-07 61.2 49 51.0
Potri.001G148600 Populus trichocarpa HOM05D000410 ORTHO05D002963 1.7e-07 60.8 86 36.0
TWI31G0485 Tripterygium wilfordii HOM05D000410 ORTHO05D003193 1.7e-07 60.8 217 28.1
CsaV3_3G002110 Cucumis sativus L. HOM05D000410 ORTHO05D002963 2.2e-07 60.5 199 26.6
PSO017G1222 Papaver somniferum HOM05D000410 ORTHO05D003410 2.2e-07 60.5 61 42.6
CARHR036570 Cardamine hirsuta HOM05D000410 ORTHO05D007231 2.9e-07 60.1 137 29.9
Rhsim12G0165200 Rhododendron simsii HOM05D000410 ORTHO05D003410 2.9e-07 60.1 54 44.4
CANSAT21G1942 Cannabis sativa HOM05D000410 ORTHO05D002963 3.8e-07 59.7 87 36.8
DCAR_007075 Daucus carota HOM05D000410 ORTHO05D003410 3.8e-07 59.7 57 45.6
Thhalv10011662m.g Eutrema salsugineum HOM05D000410 ORTHO05D007231 3.8e-07 59.7 138 29.7
AT1G45976 Arabidopsis thaliana HOM05D000410 ORTHO05D007231 5.0e-07 59.3 137 29.2
Lalb_Chr09g0324001 Lupinus albus HOM05D000410 ORTHO05D002963 5.0e-07 59.3 191 27.7
Potri.010G042200 Populus trichocarpa HOM05D000410 ORTHO05D003410 5.0e-07 59.3 49 49.0
CANSAT01G0467 Cannabis sativa HOM05D000410 ORTHO05D003410 6.5e-07 58.9 52 48.1
Nn4g22722 Nelumbo nucifera HOM05D000410 ORTHO05D003410 6.5e-07 58.9 135 28.1
Atru.chr11.2059 Acer truncatum HOM05D000410 ORTHO05D003410 8.4e-07 58.5 50 48.0
CSS0025021 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D002963 8.4e-07 58.5 180 25.0
Ciclev10021322m.g Citrus clementina HOM05D000410 ORTHO05D003410 8.4e-07 58.5 59 40.7
ECA236G1613 Erigeron canadensis HOM05D000410 ORTHO05D001514 8.4e-07 58.5 47 46.8
Rhsim12G0114800 Rhododendron simsii HOM05D000410 ORTHO05D003410 8.4e-07 58.5 58 41.4
TWI39G1106 Tripterygium wilfordii HOM05D000410 ORTHO05D001514 8.4e-07 58.5 57 45.6
CDE02G2424 Ceratophyllum demersum HOM05D000410 ORTHO05D003410 1.1e-06 58.2 50 44.0
MELO3C013883.2 Cucumis melo HOM05D000410 ORTHO05D002963 1.1e-06 58.2 281 24.9
Gohir.D01G149600 Gossypium hirsutum HOM05D000410 ORTHO05D003410 1.1e-06 58.2 55 43.6
Gorai.002G185700 Gossypium raimondii HOM05D000410 ORTHO05D003410 1.1e-06 58.2 55 43.6
Manes.06G172200 Manihot esculenta HOM05D000410 ORTHO05D001514 1.1e-06 58.2 48 45.8
CiPaw.07G146500 Carya illinoinensis HOM05D000410 ORTHO05D003193 1.4e-06 57.8 49 44.9
FAN04G2418 Fragaria x ananassa HOM05D000410 ORTHO05D002963 1.4e-06 57.8 69 36.2
MD13G1095100 Malus domestica HOM05D000410 ORTHO05D003410 1.4e-06 57.8 47 51.1
Sed0002037 Sechium edule HOM05D000410 ORTHO05D001514 1.4e-06 57.8 54 38.9
SGA_v2.0_scaffold49G18175 Striga asiatica HOM05D000410 ORTHO05D001514 1.4e-06 57.8 48 43.8
MSTRG.16109 Avicennia marina HOM05D000410 ORTHO05D001514 1.9e-06 57.4 47 48.9
ClCG09G022560 Citrullus lanatus HOM05D000410 ORTHO05D001514 1.9e-06 57.4 52 44.2
MELO3C012628.2 Cucumis melo HOM05D000410 ORTHO05D001514 1.9e-06 57.4 52 44.2
CsaV3_7G022700 Cucumis sativus L. HOM05D000410 ORTHO05D001514 1.9e-06 57.4 52 44.2
SEGI_22117 Sequoiadendron giganteum HOM05D000410 ORTHO05D003410 1.9e-06 57.4 50 44.0
GSVIVG01007729001 Vitis vinifera HOM05D000410 ORTHO05D003410 1.9e-06 57.4 83 34.9
GSVIVG01020407001 Vitis vinifera HOM05D000410 ORTHO05D001514 1.9e-06 57.4 47 46.8
Cc05_g16100 Coffea canephora HOM05D000410 ORTHO05D001514 2.5e-06 57.0 51 43.1
DCAR_019929 Daucus carota HOM05D000410 ORTHO05D001514 2.5e-06 57.0 52 44.2
Gorai.003G179400 Gossypium raimondii HOM05D000410 ORTHO05D002963 2.5e-06 57.0 92 32.6
Lalb_Chr21g0318081 Lupinus albus HOM05D000410 ORTHO05D003193 2.5e-06 57.0 51 41.2
Psat2g105120 Pisum sativum HOM05D000410 ORTHO05D003410 2.5e-06 57.0 50 44.0
Sabra10G0025200 Salix brachista HOM05D000410 ORTHO05D003410 2.5e-06 57.0 47 51.1
vmacro01155 Vaccinium macrocarpon HOM05D000410 ORTHO05D003410 2.5e-06 57.0 58 41.4
AL1G53210 Arabidopsis lyrata HOM05D000410 ORTHO05D007231 3.2e-06 56.6 139 28.8
AT3G12920 Arabidopsis thaliana HOM05D000410 ORTHO05D001514 3.2e-06 56.6 58 43.1
MELO3C003360.2 Cucumis melo HOM05D000410 ORTHO05D002963 3.2e-06 56.6 159 27.0
CsaV3_3G049650 Cucumis sativus L. HOM05D000410 ORTHO05D002963 3.2e-06 56.6 159 27.0
Migut.F01217 Erythranthe guttata HOM05D000410 ORTHO05D002963 3.2e-06 56.6 48 43.8
FAN13G1868 Fragaria x ananassa HOM05D000410 ORTHO05D002963 3.2e-06 56.6 69 34.8
Gohir.A01G162300 Gossypium hirsutum HOM05D000410 ORTHO05D003410 3.2e-06 56.6 49 44.9
Nitab4.5_0002403g0080 Nicotiana tabacum HOM05D000410 ORTHO05D003410 3.2e-06 56.6 51 43.1
Potri.012G082200 Populus trichocarpa HOM05D000410 ORTHO05D003410 3.2e-06 56.6 63 42.9
unitig_26.g8805 Utricularia gibba HOM05D000410 ORTHO05D003410 3.2e-06 56.6 49 44.9
vmacro16228 Vaccinium macrocarpon HOM05D000410 ORTHO05D003410 3.2e-06 56.6 54 46.3
A01p40610 Brassica napus HOM05D000410 ORTHO05D001514 4.2e-06 56.2 264 25.0
C01p52230 Brassica napus HOM05D000410 ORTHO05D001514 4.2e-06 56.2 250 25.2
BraA01t04094Z Brassica rapa HOM05D000410 ORTHO05D001514 4.2e-06 56.2 264 25.0
CANSAT80G1812 Cannabis sativa HOM05D000410 ORTHO05D001514 4.2e-06 56.2 57 40.4
Manes.14G016800 Manihot esculenta HOM05D000410 ORTHO05D001514 4.2e-06 56.2 48 45.8
Nn4g22058 Nelumbo nucifera HOM05D000410 ORTHO05D003410 4.2e-06 56.2 47 44.7
Phvul.002G002700 Phaseolus vulgaris HOM05D000410 ORTHO05D002963 4.2e-06 56.2 172 26.7
Potri.004G175500 Populus trichocarpa HOM05D000410 ORTHO05D003193 4.2e-06 56.2 133 27.8
Prupe.5G050300 Prunus persica HOM05D000410 ORTHO05D002963 4.2e-06 56.2 89 31.5
Zm00001eb197780 Zea mays HOM05D000410 ORTHO05D001514 4.2e-06 56.2 45 51.1
ATR0763G129 Amborella trichopoda HOM05D000410 ORTHO05D001514 5.5e-06 55.8 47 48.9
MSTRG.13066 Avicennia marina HOM05D000410 ORTHO05D001514 5.5e-06 55.8 52 40.4
CSS0000864 Camellia sinensis var. sinensis HOM05D000410 ORTHO05D003410 5.5e-06 55.8 58 43.1
CiPaw.05G185900 Carya illinoinensis HOM05D000410 ORTHO05D003410 5.5e-06 55.8 49 49.0
ClCG10G002020 Citrullus lanatus HOM05D000410 ORTHO05D002963 5.5e-06 55.8 280 23.9
DCAR_016823 Daucus carota HOM05D000410 ORTHO05D001514 5.5e-06 55.8 50 42.0
FvH4_4g32940 Fragaria vesca HOM05D000410 ORTHO05D003410 5.5e-06 55.8 54 42.6
FvH4_5g20850 Fragaria vesca HOM05D000410 ORTHO05D002963 5.5e-06 55.8 69 34.8
FAN07G1827 Fragaria x ananassa HOM05D000410 ORTHO05D003410 5.5e-06 55.8 54 42.6
FAN12G2812 Fragaria x ananassa HOM05D000410 ORTHO05D003410 5.5e-06 55.8 54 42.6
FAN17G0301 Fragaria x ananassa HOM05D000410 ORTHO05D003410 5.5e-06 55.8 54 42.6
FAN18G0369 Fragaria x ananassa HOM05D000410 ORTHO05D002963 5.5e-06 55.8 69 34.8
FAN22G0263 Fragaria x ananassa HOM05D000410 ORTHO05D003410 5.5e-06 55.8 54 42.6
Prupe.1G250200 Prunus persica HOM05D000410 ORTHO05D003410 5.5e-06 55.8 53 43.4
RcHm_v2.0_Chr4g0441971 Rosa chinensis HOM05D000410 ORTHO05D003410 5.5e-06 55.8 54 42.6
Sabra04G0117300 Salix brachista HOM05D000410 ORTHO05D003193 5.5e-06 55.8 132 27.3
MSTRG.14543 Avicennia marina HOM05D000410 ORTHO05D001514 7.2e-06 55.5 48 39.6
C08p06810 Brassica napus HOM05D000410 ORTHO05D007231 7.2e-06 55.5 131 29.0
CANSAT25G2705 Cannabis sativa HOM05D000410 ORTHO05D003193 7.2e-06 55.5 46 45.7
Carub.0003s1228 Capsella rubella HOM05D000410 ORTHO05D001514 7.2e-06 55.5 48 41.7
Ca_11354_v3 Cicer arietinum L. HOM05D000410 ORTHO05D001514 7.2e-06 55.5 63 42.9
ClCG02G018470 Citrullus lanatus HOM05D000410 ORTHO05D001514 7.2e-06 55.5 48 39.6
Ciclev10028906m.g Citrus clementina HOM05D000410 ORTHO05D003193 7.2e-06 55.5 49 42.9
Eucgr.D02146 Eucalyptus grandis HOM05D000410 ORTHO05D002963 7.2e-06 55.5 69 37.7
FAN08G2615 Fragaria x ananassa HOM05D000410 ORTHO05D002963 7.2e-06 55.5 69 34.8
Gohir.D03G169300 Gossypium hirsutum HOM05D000410 ORTHO05D002963 7.2e-06 55.5 92 31.5
MD16G1096200 Malus domestica HOM05D000410 ORTHO05D003410 7.2e-06 55.5 47 48.9
Nn2g14079 Nelumbo nucifera HOM05D000410 ORTHO05D003410 7.2e-06 55.5 163 27.0
Psat2g174360 Pisum sativum HOM05D000410 ORTHO05D002963 7.2e-06 55.5 202 26.7
TWI36G0073 Tripterygium wilfordii HOM05D000410 ORTHO05D003410 7.2e-06 55.5 49 49.0
TAR374G1636 Trochodendron aralioides HOM05D000410 ORTHO05D003410 7.2e-06 55.5 47 46.8
Zm00001eb084550 Zea mays HOM05D000410 ORTHO05D002963 7.2e-06 55.5 47 44.7
AL3G24600 Arabidopsis lyrata HOM05D000410 ORTHO05D001514 9.3e-06 55.1 58 39.7
arahy.Tifrunner.gnm1.ann1.6R4MXJ Arachis hypogaea HOM05D000410 ORTHO05D002963 9.3e-06 55.1 228 25.0
arahy.Tifrunner.gnm1.ann1.Y6VK3W Arachis hypogaea HOM05D000410 ORTHO05D002963 9.3e-06 55.1 228 25.0
EL10Ac6g13702 Beta vulgaris HOM05D000410 ORTHO05D003410 9.3e-06 55.1 49 44.9
BcaC01g04044 Brassica carinata HOM05D000410 ORTHO05D001514 9.3e-06 55.1 48 43.8
A03p37880 Brassica napus HOM05D000410 ORTHO05D001514 9.3e-06 55.1 48 43.8
C03p45950 Brassica napus HOM05D000410 ORTHO05D001514 9.3e-06 55.1 48 43.8
BolC1t05162H Brassica oleracea HOM05D000410 ORTHO05D001514 9.3e-06 55.1 263 24.7
BolC3t16871H Brassica oleracea HOM05D000410 ORTHO05D001514 9.3e-06 55.1 48 43.8
BraA03t12943Z Brassica rapa HOM05D000410 ORTHO05D001514 9.3e-06 55.1 48 43.8
Cpa.g.sc37.131 Carica papaya HOM05D000410 ORTHO05D003193 9.3e-06 55.1 52 42.3
Ciclev10021015m.g Citrus clementina HOM05D000410 ORTHO05D001514 9.3e-06 55.1 48 41.7
MELO3C019673.2 Cucumis melo HOM05D000410 ORTHO05D001514 9.3e-06 55.1 48 41.7
CsaV3_6G013770 Cucumis sativus L. HOM05D000410 ORTHO05D001514 9.3e-06 55.1 48 41.7
DCAR_031117 Daucus carota HOM05D000882 ORTHO05D003410 9.3e-06 55.1 67 40.3
Nn3g16829 Nelumbo nucifera HOM05D000410 ORTHO05D003410 9.3e-06 55.1 166 25.9
Os11g0542100 Oryza sativa ssp. japonica HOM05D000410 ORTHO05D001514 9.3e-06 55.1 88 35.2
Potri.001G439600 Populus trichocarpa HOM05D000410 ORTHO05D001514 9.3e-06 55.1 48 45.8
Potri.011G142700 Populus trichocarpa HOM05D000410 ORTHO05D001514 9.3e-06 55.1 48 45.8
SHI17675 Sapria himalayana HOM05D000410 ORTHO05D003410 9.3e-06 55.1 46 47.8
TWI38G0932 Tripterygium wilfordii HOM05D000410 ORTHO05D001514 9.3e-06 55.1 52 44.2
TAR374G1507 Trochodendron aralioides HOM05D000410 ORTHO05D003410 9.3e-06 55.1 47 46.8
vmacro09784 Vaccinium macrocarpon HOM05D000410 ORTHO05D001514 9.3e-06 55.1 49 40.8


User provided reference genes

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