Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA238G4129 Erigeron canadensis HOM05D006040 ORTHO05D007134 7.1e-231 803.5 389 100.0
HanXRQChr14g0463001 Helianthus annuus HOM05D006040 ORTHO05D007134 1.1e-146 523.9 384 66.4
Lsat_1_v5_gn_8_36881 Lactuca sativa HOM05D006040 ORTHO05D007134 1.7e-131 473.4 396 58.6
Dinv29187 Davidia involucrata HOM05D006040 ORTHO05D007134 7.6e-116 421.4 459 49.2
MD07G1303900 Malus domestica HOM05D006040 ORTHO05D007134 3.8e-115 419.1 436 49.1
Prupe.2G322500 Prunus persica HOM05D006040 ORTHO05D007134 1.2e-113 414.1 443 48.8
Cfa018660 Carpinus fangiana HOM05D006040 ORTHO05D007134 2.1e-113 413.3 473 46.9
Hma1.2p1_1235F.1_g269220 Hydrangea macrophylla HOM05D006040 ORTHO05D007134 1.7e-112 410.2 453 49.4
Cc02_g00560 Coffea canephora HOM05D006040 ORTHO05D007134 1.5e-111 407.1 430 48.6
arahy.Tifrunner.gnm1.ann1.QSB9JP Arachis hypogaea HOM05D006040 ORTHO05D007134 7.3e-111 404.8 432 48.6
Actinidia18692 Actinidia chinensis HOM05D006040 ORTHO05D007134 1.3e-110 404.1 440 49.3
Lj3C891T14 Lonicera japonica HOM05D006040 ORTHO05D007134 1.3e-110 404.1 367 55.0
Rhsim09G0211300 Rhododendron simsii HOM05D006040 ORTHO05D007134 1.3e-110 404.1 437 48.7
arahy.Tifrunner.gnm1.ann1.53C9AK Arachis hypogaea HOM05D006040 ORTHO05D007134 1.6e-110 403.7 432 48.8
ClCG02G007980 Citrullus lanatus HOM05D006040 ORTHO05D007134 4.8e-110 402.1 447 49.4
CsaV3_2G035690 Cucumis sativus L. HOM05D006040 ORTHO05D007134 4.8e-110 402.1 446 48.0
Atru.chr12.2497 Acer truncatum HOM05D006040 ORTHO05D007134 6.9e-109 398.3 420 50.2
Atru.chr12.2521 Acer truncatum HOM05D006040 ORTHO05D007134 6.9e-109 398.3 420 50.2
TAR375G0263 Trochodendron aralioides HOM05D006040 ORTHO05D007134 9.0e-109 397.9 473 46.1
CANSAT21G0186 Cannabis sativa HOM05D006040 ORTHO05D007134 3.4e-108 396.0 418 49.8
RcHm_v2.0_Chr1g0383341 Rosa chinensis HOM05D006040 ORTHO05D007134 4.4e-108 395.6 442 47.1
Thecc.03G212500 Theobroma cacao HOM05D006040 ORTHO05D007134 5.8e-108 395.2 392 52.3
Ca_05537_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 9.9e-108 394.4 429 47.6
SalBow2G1501 Salvia bowleyana HOM05D006040 ORTHO05D007134 9.9e-108 394.4 416 50.0
Nitab4.5_0000115g0200 Nicotiana tabacum HOM05D006040 ORTHO05D007134 1.3e-107 394.0 414 50.2
GSVIVG01038686001 Vitis vinifera HOM05D006040 ORTHO05D007134 1.3e-107 394.0 417 49.9
Sed0006638 Sechium edule HOM05D006040 ORTHO05D007134 1.7e-107 393.7 436 48.6
TPR.G27916 Trifolium pratense HOM05D006040 ORTHO05D007134 2.2e-107 393.3 431 47.3
Psat2g061600 Pisum sativum HOM05D006040 ORTHO05D007134 2.9e-107 392.9 432 47.9
FAN10G2970 Fragaria x ananassa HOM05D006040 ORTHO05D007134 3.8e-107 392.5 437 46.9
FvH4_7g32290 Fragaria vesca HOM05D006040 ORTHO05D007134 4.9e-107 392.1 435 47.6
Medtr5g068730 Medicago truncatula HOM05D006040 ORTHO05D007134 4.9e-107 392.1 433 47.3
FAN20G2114 Fragaria x ananassa HOM05D006040 ORTHO05D007134 8.4e-107 391.3 435 47.6
Migut.F00965 Erythranthe guttata HOM05D006040 ORTHO05D007134 1.1e-106 391.0 412 50.0
FAN10G3876 Fragaria x ananassa HOM05D006040 ORTHO05D007134 1.4e-106 390.6 439 46.9
Potri.012G004300 Populus trichocarpa HOM05D006040 ORTHO05D007134 1.9e-106 390.2 447 46.8
MSTRG.18 Avicennia marina HOM05D006040 ORTHO05D007134 2.4e-106 389.8 423 47.8
FAN03G3503 Fragaria x ananassa HOM05D006040 ORTHO05D007134 3.2e-106 389.4 439 46.9
TWI13G0007 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 3.2e-106 389.4 434 46.5
TWI74G0239 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 3.2e-106 389.4 434 46.5
PGSC0003DMG400026928 Solanum tuberosum HOM05D006040 ORTHO05D007134 5.4e-106 388.7 420 49.0
Zm00001eb209800 Zea mays HOM05D006040 ORTHO05D007134 9.3e-106 387.9 419 49.6
PGR042G3864 Punica granatum HOM05D006040 ORTHO05D007134 1.2e-105 387.5 456 46.3
QL01p000066 Quercus lobata HOM05D006040 ORTHO05D007134 1.6e-105 387.1 480 44.0
Lalb_Chr10g0102951 Lupinus albus HOM05D006040 ORTHO05D007134 4.6e-105 385.6 457 44.9
SGA_v2.0_scaffold59G20786 Striga asiatica HOM05D006040 ORTHO05D007134 1.0e-104 384.4 418 48.3
MELO3C024776.2 Cucumis melo HOM05D006040 ORTHO05D007134 1.3e-104 384.0 353 54.7
Eucgr.A00979 Eucalyptus grandis HOM05D006040 ORTHO05D007134 1.7e-104 383.6 443 47.6
Hund21080 Selenicereus undatus HOM05D006040 ORTHO05D007134 1.7e-104 383.6 409 49.9
Solyc06g072970.3 Solanum lycopersicum HOM05D006040 ORTHO05D007134 2.3e-104 383.3 420 48.3
Manes.05G196800 Manihot esculenta HOM05D006040 ORTHO05D007134 5.1e-104 382.1 420 46.7
FAN06G3790 Fragaria x ananassa HOM05D006040 ORTHO05D007134 6.6e-104 381.7 436 46.6
TPR.G35913 Trifolium pratense HOM05D006040 ORTHO05D007134 8.7e-104 381.3 401 48.9
Sc25g0001060 Simmondsia chinensis HOM05D006040 ORTHO05D007134 1.5e-103 380.6 323 57.6
Sopen06g029320 Solanum pennellii HOM05D006040 ORTHO05D007134 1.5e-103 380.6 420 48.1
Glyma.02G220600 Glycine max HOM05D006040 ORTHO05D007134 1.9e-103 380.2 429 45.7
Gorai.004G126800 Gossypium raimondii HOM05D006040 ORTHO05D007134 4.3e-103 379.0 401 50.4
Nitab4.5_0003012g0150 Nicotiana tabacum HOM05D006040 ORTHO05D007134 4.3e-103 379.0 457 45.3
Peaxi162Scf00815g00228 Petunia axillaris HOM05D006040 ORTHO05D007134 2.1e-102 376.7 360 53.1
Zm00001eb229510 Zea mays HOM05D006040 ORTHO05D007134 2.1e-102 376.7 422 47.6
Os02g0106700 Oryza sativa ssp. japonica HOM05D006040 ORTHO05D007134 6.2e-102 375.2 423 46.1
Sabra12G0000200 Salix brachista HOM05D006040 ORTHO05D007134 6.2e-102 375.2 370 50.8
DCAR_010554 Daucus carota HOM05D006040 ORTHO05D007134 8.1e-102 374.8 422 47.4
VMungo0647G0797 Vigna mungo HOM05D006040 ORTHO05D007134 8.1e-102 374.8 406 47.3
LjContig00155g0021870 Lotus japonicus HOM05D006040 ORTHO05D007134 3.1e-101 372.9 427 46.6
CAN.G65.140 Capsicum annuum HOM05D006040 ORTHO05D007134 9.0e-101 371.3 327 56.3
PSO063G2217 Papaver somniferum HOM05D006040 ORTHO05D007134 1.2e-100 370.9 465 43.0
AUR62028121 Chenopodium quinoa HOM05D006040 ORTHO05D007134 2.0e-100 370.2 419 47.0
Lj1g0004094 Lotus japonicus HOM05D006040 ORTHO05D007134 3.4e-100 369.4 409 47.4
Aqoxy3G00220 Aquilegia oxysepala HOM05D006040 ORTHO05D007134 4.5e-100 369.0 452 44.7
Lalb_Chr08g0239381 Lupinus albus HOM05D006040 ORTHO05D007134 4.5e-100 369.0 411 47.2
Cpa.g.sc3.191 Carica papaya HOM05D006040 ORTHO05D007134 5.8e-100 368.6 341 55.1
PSO017G1458 Papaver somniferum HOM05D006040 ORTHO05D007134 4.9e-99 365.5 465 42.8
AUR62005943 Chenopodium quinoa HOM05D006040 ORTHO05D007134 1.4e-98 364.0 419 47.0
EL10Ac3g05126 Beta vulgaris HOM05D006040 ORTHO05D007134 1.9e-98 363.6 418 46.4
HPP92_012812 Vanilla planifolia HOM05D006040 ORTHO05D007134 2.1e-97 360.1 437 43.2
Medtr3g093420 Medicago truncatula HOM05D006040 ORTHO05D007134 7.9e-97 358.2 390 47.9
Psat5g070440 Pisum sativum HOM05D006040 ORTHO05D007134 6.7e-96 355.1 328 52.4
CSS0020482 Camellia sinensis var. sinensis HOM05D006040 ORTHO05D007134 8.7e-96 354.8 349 51.9
Ca_16841_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 2.5e-95 353.2 325 53.8
Glyma.06G139400 Glycine max HOM05D006040 ORTHO05D007134 1.6e-94 350.5 409 46.5
Phvul.009G040600 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 3.7e-94 349.4 422 46.0
unitig_578.g16670 Utricularia gibba HOM05D006040 ORTHO05D007134 3.1e-93 346.3 330 52.7
ATR0579G018 Amborella trichopoda HOM05D006040 ORTHO05D007134 1.2e-92 344.4 415 44.1
THA.LOC104798996 Tarenaya hassleriana HOM05D006040 ORTHO05D007134 1.1e-90 337.8 407 45.9
AT5G24680 Arabidopsis thaliana HOM05D006040 ORTHO05D007134 4.8e-86 322.4 408 48.5
Carub.0006s2254 Capsella rubella HOM05D006040 ORTHO05D007134 1.1e-85 321.2 408 45.3
Sp2g22720 Schrenkiella parvula HOM05D006040 ORTHO05D007134 2.4e-85 320.1 410 44.9
SEGI_40721 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 3.1e-85 319.7 476 39.3
Thhalv10004343m.g Eutrema salsugineum HOM05D006040 ORTHO05D007134 5.3e-85 318.9 403 44.9
AL6G36290 Arabidopsis lyrata HOM05D006040 ORTHO05D007134 1.3e-83 314.3 398 46.2
FvH4_7g33360 Fragaria vesca HOM05D006040 ORTHO05D007134 2.9e-83 313.2 297 52.2
C07p43010 Brassica napus HOM05D006040 ORTHO05D007134 1.1e-82 311.2 413 45.5
BolC7t44830H Brassica oleracea HOM05D006040 ORTHO05D007134 1.9e-82 310.5 415 45.3
A06p35530 Brassica napus HOM05D006040 ORTHO05D007134 5.5e-82 308.9 411 45.0
Phvul.008G187700 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 1.6e-81 307.4 362 44.8
BraA06t26478Z Brassica rapa HOM05D006040 ORTHO05D007134 2.7e-81 306.6 410 44.9
Gohir.A08G107000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 2.3e-80 303.5 402 44.5
Pp3c12_6120 Physcomitrium patens HOM05D006040 ORTHO05D007134 1.8e-77 293.9 427 37.9
Pp3c13_14780 Physcomitrium patens HOM05D006040 ORTHO05D007134 1.5e-76 290.8 435 37.7
Aa31LG11G3920 Aethionema arabicum HOM05D006040 ORTHO05D007134 1.1e-74 284.6 493 37.7
Glyma.14G187200 Glycine max HOM05D006040 ORTHO05D007134 2.7e-73 280.0 334 44.3
BcaNung01250 Brassica carinata HOM05D006040 ORTHO05D007134 1.4e-72 277.7 423 42.1
FAN01G0445 Fragaria x ananassa HOM05D006040 ORTHO05D007134 1.0e-67 261.5 388 40.5
Pp3c20_10180 Physcomitrium patens HOM05D006040 ORTHO05D007134 3.8e-67 259.6 403 35.7
MBI12_g33183_MAGBIO Magnolia biondii HOM05D006040 ORTHO05D007134 1.4e-66 257.7 322 43.8
vmacro10175 Vaccinium macrocarpon HOM05D006040 ORTHO05D007134 2.1e-65 253.8 254 50.4
COL.COLO4_14403 Corchorus olitorius HOM05D002417 ORTHO05D002589 5.1e-64 249.2 295 46.1
Pp3c25_2290 Physcomitrium patens HOM05D006040 ORTHO05D007134 2.6e-63 246.9 420 35.0
Haze_00002 Corylus avellana HOM05D006040 ORTHO05D007134 3.3e-63 246.5 300 46.3
Duzib068G0842 Durio zibethinus HOM05D006040 ORTHO05D007134 3.2e-58 229.9 253 49.4
Glyma.04G225400 Glycine max HOM05D006040 ORTHO05D007134 2.7e-57 226.9 315 42.5
Mapoly0044s0025 Marchantia polymorpha HOM05D006040 ORTHO05D007134 4.7e-57 226.1 492 31.7
Mapoly0088s0074 Marchantia polymorpha HOM05D006040 ORTHO05D007134 9.7e-55 218.4 543 28.9
VMungo1309G2872 Vigna mungo HOM05D006040 ORTHO05D007134 1.9e-50 204.1 315 40.3
Gohir.D08G118000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 4.4e-47 193.0 333 36.6
MD01G1231800 Malus domestica HOM05D006040 ORTHO05D007134 1.1e-45 188.3 137 63.5
CARHR188790 Cardamine hirsuta HOM05D006040 ORTHO05D007134 2.0e-44 184.1 215 47.9
CBR_g29958 Chara braunii HOM05D006040 ORTHO05D007134 1.7e-43 181.0 493 29.0
Lalb_Chr14g0364691 Lupinus albus HOM05D006040 ORTHO05D007134 1.6e-41 174.5 172 50.0
SEGI_39404 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 2.3e-40 170.6 235 41.3
SEGI_00936 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 3.0e-40 170.2 216 42.6
CBR_g3746 Chara braunii HOM05D000019 ORTHO05D000002 6.8e-40 169.1 154 51.9
Pp3c23_1100 Physcomitrium patens HOM05D006040 ORTHO05D007134 7.5e-39 165.6 145 53.1
Oeu063747.1 Olea europaea HOM05D006040 ORTHO05D007134 4.9e-30 136.3 98 63.3
SMO347G0626 Selaginella moellendorffii HOM05D006040 ORTHO05D007134 3.2e-29 133.7 179 40.2
FvH4_7g33700 Fragaria vesca HOM05D006040 ORTHO05D007134 5.9e-28 129.4 264 32.2
SEGI_38707 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 7.3e-26 122.5 244 32.0
MD01G1231900 Malus domestica HOM05D006040 ORTHO05D007134 3.4e-23 113.6 96 56.2
Haze_17391 Corylus avellana HOM05D001765 ORTHO05D005876 6.4e-14 82.8 158 37.3
Cre05.g240500 Chlamydomonas reinhardtii HOM05D006040 ORTHO05D007134 1.5e-10 71.6 55 61.8
CDE04G3558 Ceratophyllum demersum HOM05D006040 ORTHO05D007134 1.9e-10 71.2 54 57.4
Oeu063748.2 Olea europaea HOM05D003307 ORTHO05D003798 3.6e-09 67.0 52 55.8
SalBow2G3456 Salvia bowleyana HOM05D000168 ORTHO05D007134 6.8e-08 62.8 38 73.7


User provided reference genes

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