Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA238G4125 Erigeron canadensis HOM05D005617 ORTHO05D006847 2.2e-160 568.9 292 100.0
HanXRQChr14g0455191 Helianthus annuus HOM05D005617 ORTHO05D006847 2.5e-124 449.1 292 83.2
Lsat_1_v5_gn_2_108021 Lactuca sativa HOM05D005617 ORTHO05D006847 6.1e-110 401.4 287 77.4
Dinv07760 Davidia involucrata HOM05D005617 ORTHO05D006847 1.6e-105 386.7 295 68.1
TAR636G3199 Trochodendron aralioides HOM05D005617 ORTHO05D006847 3.8e-104 382.1 288 68.8
CSS0012605 Camellia sinensis var. sinensis HOM05D005617 ORTHO05D006847 1.9e-103 379.8 291 67.0
Hma1.2p1_0075F.1_g039170 Hydrangea macrophylla HOM05D005617 ORTHO05D006847 9.4e-103 377.5 289 68.9
Gohir.A11G299400 Gossypium hirsutum HOM05D005617 ORTHO05D006847 3.0e-101 372.5 294 67.3
PGR142G1895 Punica granatum HOM05D005617 ORTHO05D006847 6.7e-101 371.3 278 68.3
Eucgr.L02949 Eucalyptus grandis HOM05D005617 ORTHO05D006847 8.8e-101 370.9 243 75.7
Gohir.D11G314200 Gossypium hirsutum HOM05D005617 ORTHO05D006847 8.8e-101 370.9 293 66.9
Eucgr.B02145 Eucalyptus grandis HOM05D005617 ORTHO05D006847 1.1e-100 370.5 243 75.7
Gorai.007G345400 Gossypium raimondii HOM05D005617 ORTHO05D006847 2.0e-100 369.8 292 66.8
Lj2A41G63 Lonicera japonica HOM05D005617 ORTHO05D006847 2.6e-100 369.4 251 75.3
DCAR_023096 Daucus carota HOM05D005617 ORTHO05D006847 4.4e-100 368.6 242 75.6
Sc06g0003230 Simmondsia chinensis HOM05D005617 ORTHO05D006847 9.7e-100 367.5 290 65.5
Thecc.05G271700 Theobroma cacao HOM05D005617 ORTHO05D006847 9.7e-100 367.5 295 64.4
MD09G1286500 Malus domestica HOM05D005617 ORTHO05D006847 1.7e-99 366.7 289 65.7
MD17G1278900 Malus domestica HOM05D005617 ORTHO05D006847 2.8e-99 365.9 289 65.7
SalBow3G1639 Salvia bowleyana HOM05D005617 ORTHO05D006847 2.8e-99 365.9 278 69.1
GSVIVG01023530001 Vitis vinifera HOM05D005617 ORTHO05D006847 2.8e-99 365.9 288 66.0
Migut.F00803 Erythranthe guttata HOM05D005617 ORTHO05D006847 8.2e-99 364.4 271 68.6
MSTRG.27377 Avicennia marina HOM05D005617 ORTHO05D006847 1.1e-98 364.0 270 67.0
Prupe.6G349300 Prunus persica HOM05D005617 ORTHO05D006847 1.1e-98 364.0 289 65.4
Peaxi162Scf00135g00418 Petunia axillaris HOM05D005617 ORTHO05D006847 1.4e-98 363.6 291 67.0
EL10Ac4g09040 Beta vulgaris HOM05D005617 ORTHO05D006847 2.4e-98 362.8 302 64.6
MBI10_g30078_MAGBIO Magnolia biondii HOM05D005617 ORTHO05D006847 2.4e-98 362.8 240 75.4
COL.COLO4_15469 Corchorus olitorius HOM05D005617 ORTHO05D006847 9.1e-98 360.9 242 73.6
Oeu012233.2 Olea europaea HOM05D005617 ORTHO05D006847 9.1e-98 360.9 296 65.2
CANSAT54G2044 Cannabis sativa HOM05D005617 ORTHO05D006847 2.7e-97 359.4 293 64.8
Cc02_g08910 Coffea canephora HOM05D005617 ORTHO05D006847 2.7e-97 359.4 235 75.3
Duzib177G1169 Durio zibethinus HOM05D005617 ORTHO05D006847 3.5e-97 359.0 292 65.1
Potri.013G046200 Populus trichocarpa HOM05D005617 ORTHO05D006847 3.5e-97 359.0 267 68.9
CAN.G1609.4 Capsicum annuum HOM05D005617 ORTHO05D006847 5.9e-97 358.2 298 64.4
CiPaw.08G118100 Carya illinoinensis HOM05D005617 ORTHO05D006847 5.9e-97 358.2 242 71.5
AUR62004851 Chenopodium quinoa HOM05D005617 ORTHO05D006847 7.7e-97 357.8 265 68.7
Actinidia34747 Actinidia chinensis HOM05D005617 ORTHO05D006847 1.7e-96 356.7 292 62.7
PGSC0003DMG400011501 Solanum tuberosum HOM05D005617 ORTHO05D006847 2.9e-96 355.9 224 76.3
Manes.08G138800 Manihot esculenta HOM05D005617 ORTHO05D006847 3.8e-96 355.5 289 63.0
Nitab4.5_0003768g0040 Nicotiana tabacum HOM05D005617 ORTHO05D006847 3.8e-96 355.5 265 69.4
PSO017G5929 Papaver somniferum HOM05D005617 ORTHO05D006847 6.5e-96 354.8 299 60.9
Sopen04g005070 Solanum pennellii HOM05D005617 ORTHO05D006847 6.5e-96 354.8 283 65.0
Solyc04g009940.4 Solanum lycopersicum HOM05D005617 ORTHO05D006847 8.5e-96 354.4 283 65.4
Aqoxy2G03651 Aquilegia oxysepala HOM05D005617 ORTHO05D006847 1.1e-95 354.0 240 71.2
CsaV3_1G036020 Cucumis sativus L. HOM05D005617 ORTHO05D006847 3.2e-95 352.4 292 63.0
TWI56G1032 Tripterygium wilfordii HOM05D005617 ORTHO05D006847 3.2e-95 352.4 292 62.7
Ah.06g191860 Amaranthus hybridus HOM05D005617 ORTHO05D006847 4.7e-94 348.6 296 61.5
RcHm_v2.0_Chr3g0449811 Rosa chinensis HOM05D005617 ORTHO05D006847 8.0e-94 347.8 256 68.4
QL03p030835 Quercus lobata HOM05D005617 ORTHO05D006847 4.0e-93 345.5 292 62.7
Nitab4.5_0003780g0030 Nicotiana tabacum HOM05D005617 ORTHO05D006847 6.8e-93 344.7 258 69.4
FAN14G0582 Fragaria x ananassa HOM05D005617 ORTHO05D006847 8.8e-93 344.4 256 68.0
Ciclev10021517m.g Citrus clementina HOM05D005617 ORTHO05D006847 2.0e-92 343.2 242 69.8
HPP92_002964 Vanilla planifolia HOM05D005617 ORTHO05D006847 2.6e-92 342.8 260 65.4
Sed0027621 Sechium edule HOM05D005617 ORTHO05D006847 4.4e-92 342.0 291 60.8
VMungo0540G0455 Vigna mungo HOM05D005617 ORTHO05D006847 4.4e-92 342.0 265 64.2
Glyma.19G248200 Glycine max HOM05D005617 ORTHO05D006847 7.5e-92 341.3 278 62.9
arahy.Tifrunner.gnm1.ann1.X65E39 Arachis hypogaea HOM05D005617 ORTHO05D006847 2.8e-91 339.3 294 60.2
arahy.Tifrunner.gnm1.ann1.9NRB0Q Arachis hypogaea HOM05D005617 ORTHO05D006847 4.8e-91 338.6 294 59.5
Phvul.006G105300 Phaseolus vulgaris HOM05D005617 ORTHO05D006847 6.3e-91 338.2 278 61.9
Glyma.03G250700 Glycine max HOM05D005617 ORTHO05D006847 1.8e-90 336.7 278 62.2
PSO063G2686 Papaver somniferum HOM05D005617 ORTHO05D006847 1.8e-90 336.7 302 58.9
FAN05G0714 Fragaria x ananassa HOM05D001473 ORTHO05D003934 5.4e-90 335.1 255 66.7
Lj1g0025948 Lotus japonicus HOM05D005617 ORTHO05D006847 9.1e-90 334.3 240 67.9
BcaC05g24795 Brassica carinata HOM05D005617 ORTHO05D006847 1.6e-89 333.6 292 61.0
BolC5t29432H Brassica oleracea HOM05D005617 ORTHO05D006847 1.6e-89 333.6 292 61.0
Potri.019G018300 Populus trichocarpa HOM05D005617 ORTHO05D006847 1.6e-89 333.6 253 67.2
Sp1g07300 Schrenkiella parvula HOM05D005617 ORTHO05D006847 3.5e-89 332.4 290 62.4
unitig_32.g10679 Utricularia gibba HOM05D005617 ORTHO05D006847 3.5e-89 332.4 251 65.3
FAN05G5604 Fragaria x ananassa HOM05D001473 ORTHO05D003934 5.9e-89 331.6 255 66.3
C05p06720 Brassica napus HOM05D005617 ORTHO05D006847 1.7e-88 330.1 292 59.9
THA.LOC104805778 Tarenaya hassleriana HOM05D005617 ORTHO05D006847 2.2e-88 329.7 288 59.7
BraA06t23768Z Brassica rapa HOM05D005617 ORTHO05D006847 5.0e-88 328.6 292 59.6
CARHR008550 Cardamine hirsuta HOM05D005617 ORTHO05D006847 8.5e-88 327.8 291 61.5
Thhalv10008167m.g Eutrema salsugineum HOM05D005617 ORTHO05D006847 1.5e-87 327.0 290 61.7
Lalb_Chr04g0262061 Lupinus albus HOM05D005617 ORTHO05D006847 1.5e-87 327.0 278 59.7
TPR.G6961 Trifolium pratense HOM05D005617 ORTHO05D006847 1.9e-87 326.6 288 59.7
AT1G08640 Arabidopsis thaliana HOM05D005617 ORTHO05D006847 2.7e-86 322.8 293 60.8
Psat3g006600 Pisum sativum HOM05D005617 ORTHO05D006847 2.7e-86 322.8 265 61.1
AL1G19070 Arabidopsis lyrata HOM05D005617 ORTHO05D006847 4.7e-86 322.0 289 60.6
BcaB07g34105 Brassica carinata HOM05D005617 ORTHO05D006847 8.0e-86 321.2 290 60.7
Cfa006341 Carpinus fangiana HOM05D005617 ORTHO05D006548 2.3e-85 319.7 210 73.3
Carub.0001s0800 Capsella rubella HOM05D005617 ORTHO05D006847 3.0e-85 319.3 288 59.7
BcaB03g13320 Brassica carinata HOM05D005617 ORTHO05D006847 4.0e-85 318.9 290 59.7
Hund22155 Selenicereus undatus HOM05D005617 ORTHO05D006847 2.0e-84 316.6 263 62.7
ATR0736G212 Amborella trichopoda HOM05D005617 ORTHO05D006847 4.4e-84 315.5 273 63.4
FAN14G1026 Fragaria x ananassa HOM05D001473 ORTHO05D003934 6.3e-83 311.6 235 66.8
Rhsim09G0137600 Rhododendron simsii HOM05D005617 ORTHO05D006847 8.3e-83 311.2 240 62.5
Aa31sc110G20 Aethionema arabicum HOM05D005617 ORTHO05D006847 7.7e-81 304.7 261 59.4
A06p05600 Brassica napus HOM05D005617 ORTHO05D006847 1.7e-80 303.5 271 59.4
Medtr7g115670 Medicago truncatula HOM05D005617 ORTHO05D006847 2.3e-80 303.1 215 69.3
SEGI_39921 Sequoiadendron giganteum HOM05D005617 ORTHO05D006847 6.1e-78 295.0 240 58.3
CDE04G1987 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 5.7e-76 288.5 244 61.9
Sabra13G0042400 Salix brachista HOM05D005617 ORTHO05D006847 9.8e-76 287.7 290 56.2
AUR62040935 Chenopodium quinoa HOM05D005617 ORTHO05D006847 9.2e-74 281.2 182 73.1
MELO3C020566.2 Cucumis melo HOM05D005617 ORTHO05D006847 2.0e-73 280.0 296 53.4
Haze_04439 Corylus avellana HOM05D005617 ORTHO05D006847 3.5e-73 279.3 241 60.2
FAN09G1753 Fragaria x ananassa HOM05D001473 ORTHO05D003934 4.6e-73 278.9 217 66.4
FvH4_6g01960 Fragaria vesca HOM05D005617 ORTHO05D006847 5.9e-73 278.5 213 66.7
Zm00001eb261540 Zea mays HOM05D005617 ORTHO05D006847 5.0e-72 275.4 222 59.5
SGA_v2.0_scaffold380G50362 Striga asiatica HOM05D005617 ORTHO05D006847 8.6e-72 274.6 321 50.2
ClCG03G000920 Citrullus lanatus HOM05D005617 ORTHO05D006847 1.6e-70 270.4 241 61.8
Os08g0127600 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 2.1e-70 270.0 230 57.8
Nn1g08261 Nelumbo nucifera HOM05D005617 ORTHO05D006847 6.2e-70 268.5 238 60.5
Mapoly0036s0041 Marchantia polymorpha HOM05D005617 ORTHO05D006847 2.6e-68 263.1 254 54.3
Atru.chr2.967 Acer truncatum HOM05D005617 ORTHO05D006847 3.7e-67 259.2 175 70.9
Os10g0478100 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 2.0e-65 253.4 232 54.3
SMO116G0251 Selaginella moellendorffii HOM05D005617 ORTHO05D006847 2.7e-65 253.1 233 53.6
Ca_09461_v3 Cicer arietinum L. HOM05D005617 ORTHO05D006847 1.1e-61 241.1 166 70.5
AagrBONN_evm.TU.Sc2ySwM_344.3205 Anthoceros agrestis HOM05D005617 ORTHO05D006847 2.2e-59 233.4 246 48.0
Pp3c23_15250 Physcomitrium patens HOM05D005617 ORTHO05D006847 3.7e-59 232.6 233 50.6
Zm00001eb173360 Zea mays HOM05D005617 ORTHO05D006847 1.5e-55 220.7 177 58.8
FAN02G1215 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.4e-53 214.2 149 67.8
vmacro10358 Vaccinium macrocarpon HOM05D005617 ORTHO05D006847 6.8e-53 211.8 243 47.7
C08p12050 Brassica napus HOM05D005617 ORTHO05D006847 9.2e-50 201.4 237 51.1
Cpa.g.sc162.39 Carica papaya HOM05D005617 ORTHO05D006847 1.6e-46 190.7 170 59.4
CDE04G2248 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 8.1e-46 188.3 112 79.5
TAR365G0454 Trochodendron aralioides HOM05D005617 ORTHO05D006847 3.4e-44 183.0 228 48.7
CBR_g63068 Chara braunii HOM05D005617 ORTHO05D006847 1.8e-37 160.6 223 41.7
Sabra19G0030400 Salix brachista HOM05D001473 ORTHO05D003934 7.1e-34 148.7 130 59.2
TPR.G11236 Trifolium pratense HOM05D005617 ORTHO05D006847 3.3e-31 139.8 106 62.3
BcaC07g38407 Brassica carinata HOM05D005617 ORTHO05D006847 7.6e-28 128.6 138 50.0
SHI23140 Sapria himalayana HOM05D005617 ORTHO05D001257 1.9e-26 124.0 192 37.5
Cpa.g.c45301 Carica papaya HOM05D005617 ORTHO05D006847 3.5e-25 119.8 73 76.7
C08p11620 Brassica napus HOM05D005617 ORTHO05D006847 1.5e-23 114.4 81 64.2
C08p11690 Brassica napus HOM05D005617 ORTHO05D006847 1.5e-23 114.4 81 63.0
C08p11650 Brassica napus HOM05D005617 ORTHO05D006847 1.3e-22 111.3 81 63.0
BolC8t48841H Brassica oleracea HOM05D005617 ORTHO05D006847 1.2e-20 104.8 82 62.2
PRCOL_00003784 Prasinoderma coloniale HOM05D005182 ORTHO05D006847 9.3e-18 95.1 167 32.9
BcaC07g38438 Brassica carinata HOM05D005617 ORTHO05D006847 3.0e-16 90.1 80 61.2
PRCOL_00005829 Prasinoderma coloniale HOM05D005617 ORTHO05D006847 4.3e-15 86.3 197 31.0
Atru.chr2.966 Acer truncatum HOM05D005617 ORTHO05D006847 1.2e-12 78.2 54 74.1
MCO09G447 Micromonas commoda HOM05D005617 ORTHO05D006847 1.0e-11 75.1 228 30.3
TPR.G21937 Trifolium pratense HOM05D005617 ORTHO05D006847 1.1e-10 71.6 58 62.1
Rhsim04G0044500 Rhododendron simsii HOM05D005617 ORTHO05D000521 1.4e-10 71.2 87 52.9
BcaB01g02218 Brassica carinata HOM05D005617 ORTHO05D006847 1.9e-10 70.9 52 67.3
Cre03.g171100 Chlamydomonas reinhardtii HOM05D005617 ORTHO05D006847 9.3e-10 68.6 199 31.2
FvH4_6g01860 Fragaria vesca HOM05D005617 ORTHO05D006847 3.6e-09 66.6 72 55.6
FAN14G4186 Fragaria x ananassa HOM05D005617 ORTHO05D006847 3.6e-09 66.6 72 55.6
FAN14G5978 Fragaria x ananassa HOM05D005617 ORTHO05D006847 3.6e-09 66.6 72 55.6
TPR.G6979 Trifolium pratense HOM05D005617 ORTHO05D006847 4.6e-09 66.2 109 42.2
FAN14G3066 Fragaria x ananassa HOM05D005617 ORTHO05D006847 7.9e-09 65.5 72 54.2
FAN09G3889 Fragaria x ananassa HOM05D005617 ORTHO05D006847 1.0e-08 65.1 72 54.2
Phvul.005G084700 Phaseolus vulgaris HOM05D005617 ORTHO05D006847 2.5e-07 60.5 122 37.7
HanXRQChr17g0542141 Helianthus annuus HOM05D005617 ORTHO05D221402 9.7e-07 58.5 36 83.3


User provided reference genes

Program Settings