Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA238G3981 Erigeron canadensis HOM05D004470 ORTHO05D005079 1.0e-63 246.5 121 100.0
Lsat_1_v5_gn_2_67201 Lactuca sativa HOM05D004470 ORTHO05D005079 1.0e-47 193.4 121 79.3
HanXRQChr14g0445721 Helianthus annuus HOM05D004470 ORTHO05D005079 2.3e-47 192.2 121 81.8
PGSC0003DMG400002761 Solanum tuberosum HOM05D004470 ORTHO05D005079 4.0e-31 138.3 118 63.6
Peaxi162Scf00357g00829 Petunia axillaris HOM05D004470 ORTHO05D005079 5.2e-31 137.9 119 64.7
Nitab4.5_0010074g0010 Nicotiana tabacum HOM05D004470 ORTHO05D005079 6.8e-31 137.5 122 63.1
Sopen01g044200 Solanum pennellii HOM05D004470 ORTHO05D005079 8.9e-31 137.1 118 62.7
Nitab4.5_0001338g0040 Nicotiana tabacum HOM05D004470 ORTHO05D005079 1.5e-30 136.3 122 63.1
Hma1.2p1_0052F.1_g030690 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 2.0e-30 136.0 118 66.1
CAN.G1076.31 Capsicum annuum HOM05D004470 ORTHO05D005079 2.6e-30 135.6 118 62.7
EL10Ac4g09488 Beta vulgaris HOM05D004470 ORTHO05D005079 7.5e-30 134.0 110 63.6
Prupe.3G062500 Prunus persica HOM05D004470 ORTHO05D005079 9.8e-30 133.7 122 60.7
Prupe.2G047800 Prunus persica HOM05D004470 ORTHO05D005079 6.4e-29 131.0 118 61.9
MSTRG.5145 Avicennia marina HOM05D004470 ORTHO05D005079 1.1e-28 130.2 127 55.9
HanXRQChr15g0471581 Helianthus annuus HOM05D004470 ORTHO05D005079 1.1e-28 130.2 96 70.8
Hma1.2p1_0008F-1.1_g005470 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 1.1e-28 130.2 119 61.3
Ah.06g196140 Amaranthus hybridus HOM05D004470 ORTHO05D005079 1.8e-28 129.4 115 61.7
CANSAT56G4147 Cannabis sativa HOM05D004470 ORTHO05D005079 2.4e-28 129.0 117 61.5
COL.COLO4_05537 Corchorus olitorius HOM05D004470 ORTHO05D005079 2.4e-28 129.0 91 69.2
Duzib128G0232 Durio zibethinus HOM05D004470 ORTHO05D005079 2.4e-28 129.0 118 61.0
CSS0034232 Camellia sinensis var. sinensis HOM05D004470 ORTHO05D005079 3.2e-28 128.6 118 60.2
Ah.16g100620 Amaranthus hybridus HOM05D004470 ORTHO05D005079 4.1e-28 128.3 115 60.9
Dinv30905 Davidia involucrata HOM05D004470 ORTHO05D005079 4.1e-28 128.3 118 58.5
CANSAT54G2827 Cannabis sativa HOM05D004470 ORTHO05D005079 5.4e-28 127.9 118 60.2
MD10G1090000 Malus domestica HOM05D004470 ORTHO05D005079 7.0e-28 127.5 106 64.2
TAR362G0763 Trochodendron aralioides HOM05D004470 ORTHO05D005079 7.0e-28 127.5 118 58.5
Phvul.007G202300 Phaseolus vulgaris HOM05D004470 ORTHO05D005079 1.2e-27 126.7 120 60.0
TPR.G34849 Trifolium pratense HOM05D004470 ORTHO05D005079 1.2e-27 126.7 117 59.8
Oeu000058.1 Olea europaea HOM05D004470 ORTHO05D005079 1.6e-27 126.3 120 59.2
AUR62006764 Chenopodium quinoa HOM05D004470 ORTHO05D005079 2.0e-27 125.9 115 59.1
Duzib106G0025 Durio zibethinus HOM05D004470 ORTHO05D005079 2.0e-27 125.9 91 69.2
Medtr2g023920 Medicago truncatula HOM05D004470 ORTHO05D005079 2.0e-27 125.9 118 57.6
Atru.chr1.2932 Acer truncatum HOM05D004470 ORTHO05D005079 3.5e-27 125.2 118 61.9
Ciclev10002908m.g Citrus clementina HOM05D004470 ORTHO05D005079 4.6e-27 124.8 119 58.8
Psat1g179040 Pisum sativum HOM05D004470 ORTHO05D005079 4.6e-27 124.8 104 63.5
MELO3C015252.2 Cucumis melo HOM05D004470 ORTHO05D005079 5.9e-27 124.4 96 65.6
Glyma.20G096000 Glycine max HOM05D004470 ORTHO05D005079 5.9e-27 124.4 114 58.8
arahy.Tifrunner.gnm1.ann1.IGN13F Arachis hypogaea HOM05D004470 ORTHO05D005079 7.8e-27 124.0 96 66.7
Lj6g0017458 Lotus japonicus HOM05D004470 ORTHO05D005079 7.8e-27 124.0 118 58.5
Hund07308 Selenicereus undatus HOM05D004470 ORTHO05D005079 7.8e-27 124.0 119 58.8
Gohir.A08G205100 Gossypium hirsutum HOM05D004470 ORTHO05D005079 1.0e-26 123.6 90 66.7
Gohir.D08G222200 Gossypium hirsutum HOM05D004470 ORTHO05D005079 1.0e-26 123.6 90 66.7
Gorai.004G236000 Gossypium raimondii HOM05D004470 ORTHO05D005079 1.0e-26 123.6 90 66.7
Thecc.05G324600 Theobroma cacao HOM05D004470 ORTHO05D005079 1.0e-26 123.6 91 67.0
Migut.N00943 Erythranthe guttata HOM05D004470 ORTHO05D005079 1.3e-26 123.2 102 62.7
TWI36G1558 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 1.7e-26 122.9 118 56.8
arahy.Tifrunner.gnm1.ann1.3R4C35 Arachis hypogaea HOM05D004470 ORTHO05D005079 2.3e-26 122.5 89 69.7
arahy.Tifrunner.gnm1.ann1.44SN5D Arachis hypogaea HOM05D004470 ORTHO05D005079 2.3e-26 122.5 89 69.7
DCAR_025290 Daucus carota HOM05D004470 ORTHO05D005079 2.3e-26 122.5 111 57.7
Nn3g21765 Nelumbo nucifera HOM05D004470 ORTHO05D005079 2.3e-26 122.5 89 68.5
TPR.G29395 Trifolium pratense HOM05D004470 ORTHO05D005079 2.3e-26 122.5 105 61.9
TWI63G0379 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 2.3e-26 122.5 120 56.7
Ca_10181_v3 Cicer arietinum L. HOM05D004470 ORTHO05D005079 3.0e-26 122.1 113 58.4
Nitab4.5_0001255g0050 Nicotiana tabacum HOM05D004470 ORTHO05D005079 3.0e-26 122.1 150 51.3
Sed0027904 Sechium edule HOM05D004470 ORTHO05D005079 3.0e-26 122.1 121 58.7
Actinidia35512 Actinidia chinensis HOM05D004470 ORTHO05D005079 3.9e-26 121.7 114 54.4
CsaV3_1G037920 Cucumis sativus L. HOM05D004470 ORTHO05D005079 3.9e-26 121.7 121 58.7
Lalb_Chr02g0147721 Lupinus albus HOM05D004470 ORTHO05D005079 3.9e-26 121.7 118 56.8
MD07G1055000 Malus domestica HOM05D004470 ORTHO05D005079 3.9e-26 121.7 87 69.0
CDE09G1304 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 5.0e-26 121.3 109 60.6
SGA_v2.0_scaffold5G02899 Striga asiatica HOM05D004470 ORTHO05D005079 6.6e-26 120.9 90 66.7
Glyma.10G146200 Glycine max HOM05D004470 ORTHO05D005079 1.1e-25 120.2 114 57.0
GSVIVG01031257001 Vitis vinifera HOM05D004470 ORTHO05D005079 1.9e-25 119.4 89 66.3
Aqoxy2G02663 Aquilegia oxysepala HOM05D004470 ORTHO05D005079 2.5e-25 119.0 91 63.7
Cc02_g35220 Coffea canephora HOM05D004470 ORTHO05D005079 2.5e-25 119.0 119 58.8
Manes.09G177800 Manihot esculenta HOM05D004470 ORTHO05D005079 2.5e-25 119.0 120 55.8
Potri.005G011800 Populus trichocarpa HOM05D004470 ORTHO05D005079 2.5e-25 119.0 122 54.9
SGA_v2.0_scaffold37G14596 Striga asiatica HOM05D004470 ORTHO05D005079 2.5e-25 119.0 91 65.9
ATR0693G181 Amborella trichopoda HOM05D004470 ORTHO05D005079 3.3e-25 118.6 106 60.4
Sc16g0009110 Simmondsia chinensis HOM05D004470 ORTHO05D005079 3.3e-25 118.6 116 56.0
CiPaw.07G030800 Carya illinoinensis HOM05D004470 ORTHO05D005079 4.3e-25 118.2 120 57.5
Manes.08G110300 Manihot esculenta HOM05D004470 ORTHO05D005079 4.3e-25 118.2 118 55.9
PGR031G2302 Punica granatum HOM05D004470 ORTHO05D005079 4.3e-25 118.2 127 54.3
CARHR186760 Cardamine hirsuta HOM05D004470 ORTHO05D005079 5.6e-25 117.9 119 54.6
Potri.013G007600 Populus trichocarpa HOM05D004470 ORTHO05D005079 5.6e-25 117.9 119 55.5
Sabra05G0020100 Salix brachista HOM05D004470 ORTHO05D005079 7.3e-25 117.5 123 55.3
Hund21865 Selenicereus undatus HOM05D004470 ORTHO05D005079 7.3e-25 117.5 84 66.7
BcaNung03672 Brassica carinata HOM05D004470 ORTHO05D005079 1.2e-24 116.7 120 55.8
CDE02G2719 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 1.2e-24 116.7 109 58.7
SalBow5G0245 Salvia bowleyana HOM05D004470 ORTHO05D005079 1.2e-24 116.7 116 56.0
Sp2g21200 Schrenkiella parvula HOM05D004470 ORTHO05D005079 1.2e-24 116.7 118 54.2
A06p37040 Brassica napus HOM05D004470 ORTHO05D005079 1.6e-24 116.3 121 54.5
TWI34G1281 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 1.6e-24 116.3 120 55.0
A09p05650 Brassica napus HOM05D004470 ORTHO05D005079 2.1e-24 115.9 118 55.1
Eucgr.H03299 Eucalyptus grandis HOM05D004470 ORTHO05D005079 2.1e-24 115.9 104 59.6
BraA09t36207Z Brassica rapa HOM05D004470 ORTHO05D005079 3.6e-24 115.2 118 54.2
BraA06t26628Z Brassica rapa HOM05D004470 ORTHO05D005079 4.7e-24 114.8 118 52.5
Sabra13G0006500 Salix brachista HOM05D004470 ORTHO05D005079 4.7e-24 114.8 119 54.6
AL6G38670 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 6.2e-24 114.4 121 52.9
BcaC04g23637 Brassica carinata HOM05D004470 ORTHO05D005079 6.2e-24 114.4 118 54.2
BcaNung03915 Brassica carinata HOM05D004470 ORTHO05D005079 6.2e-24 114.4 119 52.9
BolC7t44679H Brassica oleracea HOM05D004470 ORTHO05D005079 6.2e-24 114.4 121 55.4
BolC9t53546H Brassica oleracea HOM05D004470 ORTHO05D005079 6.2e-24 114.4 118 54.2
Eucgr.A00650 Eucalyptus grandis HOM05D004470 ORTHO05D005079 8.0e-24 114.0 104 58.7
RcHm_v2.0_Chr2g0139741 Rosa chinensis HOM05D004470 ORTHO05D005079 8.0e-24 114.0 118 54.2
CiPaw.08G154600 Carya illinoinensis HOM05D004470 ORTHO05D005079 1.0e-23 113.6 119 56.3
Haze_04037 Corylus avellana HOM05D004470 ORTHO05D005079 1.0e-23 113.6 120 55.0
C09p06260 Brassica napus HOM05D004470 ORTHO05D005079 1.4e-23 113.2 119 53.8
QL03p015399 Quercus lobata HOM05D004470 ORTHO05D005079 1.8e-23 112.8 119 55.5
BcaB04g19711 Brassica carinata HOM05D004470 ORTHO05D005079 3.1e-23 112.1 118 53.4
FAN14G0179 Fragaria x ananassa HOM05D004470 ORTHO05D005079 3.1e-23 112.1 111 55.9
HPP92_002708 Vanilla planifolia HOM05D004470 ORTHO05D005079 4.0e-23 111.7 85 61.2
FAN02G2550 Fragaria x ananassa HOM05D004470 ORTHO05D005079 8.9e-23 110.5 111 55.9
HPP92_027934 Vanilla planifolia HOM05D004470 ORTHO05D005079 1.2e-22 110.2 85 60.0
Carub.0006s2445 Capsella rubella HOM05D004470 ORTHO05D005079 1.5e-22 109.8 88 62.5
ClCG03G017770 Citrullus lanatus HOM05D004470 ORTHO05D005079 1.5e-22 109.8 80 66.2
FAN05G2322 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.5e-22 109.8 111 55.9
Aa31LG5G16190 Aethionema arabicum HOM05D004470 ORTHO05D005079 2.6e-22 109.0 119 54.6
Cfa006723 Carpinus fangiana HOM05D004470 ORTHO05D005079 2.6e-22 109.0 116 55.2
PSO339G4842 Papaver somniferum HOM05D004470 ORTHO05D005079 2.6e-22 109.0 92 62.0
AT3G05810 Arabidopsis thaliana HOM05D004470 ORTHO05D005079 3.4e-22 108.6 88 61.4
THA.LOC104821881 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 3.4e-22 108.6 82 64.6
Carub.0003s0517 Capsella rubella HOM05D004470 ORTHO05D005079 4.4e-22 108.2 105 55.2
FAN09G3660 Fragaria x ananassa HOM05D004470 ORTHO05D005079 4.4e-22 108.2 111 54.1
PSO675G4687 Papaver somniferum HOM05D004470 ORTHO05D005079 4.4e-22 108.2 112 53.6
CARHR080260 Cardamine hirsuta HOM05D004470 ORTHO05D005079 5.8e-22 107.8 89 59.6
PSO541G1615 Papaver somniferum HOM05D004470 ORTHO05D005079 5.8e-22 107.8 112 53.6
THA.LOC104802774 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 5.8e-22 107.8 98 57.1
PSO513G0108 Papaver somniferum HOM05D004470 ORTHO05D005079 7.5e-22 107.5 92 60.9
HPP92_002665 Vanilla planifolia HOM05D004470 ORTHO05D005079 9.8e-22 107.1 85 58.8
MBI18_g35544_MAGBIO Magnolia biondii HOM05D004470 ORTHO05D005079 2.2e-21 105.9 112 52.7
AL3G16550 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 2.9e-21 105.5 89 58.4
Os01g0299400 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 2.9e-21 105.5 108 52.8
Zm00001eb340410 Zea mays HOM05D004470 ORTHO05D005079 8.3e-21 104.0 88 60.2
Sp3g04670 Schrenkiella parvula HOM05D004470 ORTHO05D005079 1.4e-20 103.2 91 59.3
Nn4g25533 Nelumbo nucifera HOM05D004470 ORTHO05D005079 2.4e-20 102.4 154 43.5
Zm00001eb130040 Zea mays HOM05D004470 ORTHO05D005079 2.4e-20 102.4 99 54.5
Thhalv10021798m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 3.2e-20 102.1 88 59.1
Os10g0150200 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 7.0e-20 100.9 97 55.7
Sabra05G0008600 Salix brachista HOM05D004470 ORTHO05D005079 7.0e-20 100.9 159 42.1
MD15G1427600 Malus domestica HOM05D004470 ORTHO05D005079 6.6e-18 94.4 76 61.8
Lju926A3T37 Lonicera japonica HOM05D004470 ORTHO05D005079 8.6e-18 94.0 95 60.0
Rhsim11G0097400 Rhododendron simsii HOM05D004470 ORTHO05D005079 1.5e-17 93.2 91 57.1
vmacro01577 Vaccinium macrocarpon HOM05D004470 ORTHO05D005079 1.9e-17 92.8 85 60.0
DCAR_002036 Daucus carota HOM05D004470 ORTHO05D005079 7.3e-17 90.9 93 53.8
FAN28G2801 Fragaria x ananassa HOM05D004470 ORTHO05D005079 3.6e-16 88.6 91 54.9
FAN26G0538 Fragaria x ananassa HOM05D004470 ORTHO05D005079 6.2e-16 87.8 114 48.2
VMungo0720G0966 Vigna mungo HOM05D004470 ORTHO05D005079 1.4e-15 86.7 100 51.0
AUR62000416 Chenopodium quinoa HOM05D004470 ORTHO05D005079 1.8e-15 86.3 91 53.8
C02p58610 Brassica napus HOM05D004470 ORTHO05D005079 7.5e-14 80.9 78 53.8
Sc18g0006160 Simmondsia chinensis HOM05D004470 ORTHO05D005079 9.8e-14 80.5 78 57.7
BcaC03g17832 Brassica carinata HOM05D004470 ORTHO05D005079 1.3e-13 80.1 76 53.9
BcaNung06220 Brassica carinata HOM05D004470 ORTHO05D005079 1.3e-13 80.1 76 53.9
FvH4_6g32060 Fragaria vesca HOM05D004470 ORTHO05D005079 1.3e-13 80.1 84 52.4
unitig_37.g12917 Utricularia gibba HOM05D004470 ORTHO05D005079 1.4e-12 76.6 93 51.6
Mapoly0164s0021 Marchantia polymorpha HOM05D004470 ORTHO05D005079 4.1e-12 75.1 92 44.6
AagrBONN_evm.TU.Sc2ySwM_228.963 Anthoceros agrestis HOM05D004470 ORTHO05D005079 5.4e-12 74.7 73 49.3
Thhalv10026672m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 2.7e-11 72.4 69 56.5
Rhsim05G0127900 Rhododendron simsii HOM05D004470 ORTHO05D005079 5.1e-10 68.2 68 50.0
Eucgr.H03248 Eucalyptus grandis HOM05D004470 ORTHO05D005079 6.6e-10 67.8 65 55.4
Cpa.g.sc48.175 Carica papaya HOM05D004470 ORTHO05D005079 1.1e-09 67.0 55 61.8
Aa31LG1G17020 Aethionema arabicum HOM05D004470 ORTHO05D005079 1.9e-09 66.2 83 45.8
AUR62036369 Chenopodium quinoa HOM05D004470 ORTHO05D005079 2.5e-09 65.9 68 54.4
SHI42436 Sapria himalayana HOM05D004470 ORTHO05D005079 1.2e-08 63.5 59 55.9
SEGI_31285 Sequoiadendron giganteum HOM05D004470 ORTHO05D005079 1.6e-08 63.2 81 43.2
A02p39020 Brassica napus HOM05D004470 ORTHO05D005079 1.8e-07 59.7 68 50.0
Pp3c6_8090 Physcomitrium patens HOM05D004470 ORTHO05D005079 5.2e-07 58.2 95 35.8
AUR62033672 Chenopodium quinoa HOM05D004470 ORTHO05D005079 2.0e-06 56.2 56 57.1
vmacro19787 Vaccinium macrocarpon HOM05D000003 ORTHO05D005079 9.9e-06 53.9 68 45.6


User provided reference genes

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