Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA238G3857 Erigeron canadensis HOM05D003199 ORTHO05D003528 2.6e-105 385.6 223 100.0
HanXRQChr14g0450701 Helianthus annuus HOM05D003199 ORTHO05D003528 4.3e-23 112.5 95 85.3
HanXRQChr07g0198271 Helianthus annuus HOM05D003199 ORTHO05D003528 5.6e-23 112.1 111 77.5
Lsat_1_v5_gn_2_94161 Lactuca sativa HOM05D003199 ORTHO05D003528 3.6e-22 109.4 95 86.3
DCAR_002949 Daucus carota HOM05D003199 ORTHO05D003528 1.1e-13 81.3 89 68.5
Ah.02g120420 Amaranthus hybridus HOM05D003199 ORTHO05D003528 1.4e-13 80.9 94 71.3
Ah.03g147440 Amaranthus hybridus HOM05D003199 ORTHO05D003528 1.8e-13 80.5 94 71.3
MD17G1012600 Malus domestica HOM05D003199 ORTHO05D003528 3.1e-13 79.7 105 47.6
PGR083G2021 Punica granatum HOM05D003199 ORTHO05D003528 4.0e-13 79.3 94 66.0
AUR62003498 Chenopodium quinoa HOM05D003199 ORTHO05D003528 5.3e-13 79.0 95 49.5
PGR142G2189 Punica granatum HOM05D003199 ORTHO05D003528 6.9e-13 78.6 90 57.8
AUR62017813 Chenopodium quinoa HOM05D003199 ORTHO05D003528 1.5e-12 77.4 95 73.7
Nitab4.5_0000040g0380 Nicotiana tabacum HOM05D003199 ORTHO05D003528 1.5e-12 77.4 89 48.3
Nitab4.5_0002911g0010 Nicotiana tabacum HOM05D003199 ORTHO05D003528 1.5e-12 77.4 89 48.3
Prupe.3G305100 Prunus persica HOM05D003199 ORTHO05D003528 4.5e-12 75.9 105 45.7
Ciclev10016867m.g Citrus clementina HOM05D003199 ORTHO05D003528 1.0e-11 74.7 105 61.0
CsaV3_3G027140 Cucumis sativus L. HOM05D003199 ORTHO05D003528 1.0e-11 74.7 93 43.0
CSS0036982 Camellia sinensis var. sinensis HOM05D003199 ORTHO05D003528 1.3e-11 74.3 89 71.9
unitig_52.g17653 Utricularia gibba HOM05D003199 ORTHO05D003528 1.3e-11 74.3 88 70.5
MELO3C014875.2 Cucumis melo HOM05D003199 ORTHO05D003528 1.7e-11 73.9 93 43.0
Gorai.012G087400 Gossypium raimondii HOM05D003199 ORTHO05D003528 1.7e-11 73.9 108 66.7
ClCG05G013420 Citrullus lanatus HOM05D003199 ORTHO05D003528 2.2e-11 73.6 93 43.0
Cpa.g.sc1017.1 Carica papaya HOM05D003199 ORTHO05D003528 3.8e-11 72.8 88 71.6
Gohir.A05G339100 Gossypium hirsutum HOM05D003199 ORTHO05D003528 4.9e-11 72.4 109 63.3
Gohir.D04G077600 Gossypium hirsutum HOM05D003199 ORTHO05D003528 4.9e-11 72.4 108 65.7
THA.LOC104825617 Tarenaya hassleriana HOM05D003199 ORTHO05D003528 4.9e-11 72.4 94 63.8
Potri.001G331600 Populus trichocarpa HOM05D003199 ORTHO05D003528 8.4e-11 71.6 105 46.7
MSTRG.3260 Avicennia marina HOM05D003199 ORTHO05D003528 1.1e-10 71.2 89 70.8
Phvul.001G094500 Phaseolus vulgaris HOM05D003199 ORTHO05D003528 1.1e-10 71.2 94 53.2
Ca_14371_v3 Cicer arietinum L. HOM05D003199 ORTHO05D003528 1.4e-10 70.9 102 41.2
Cc07_g00740 Coffea canephora HOM05D003199 ORTHO05D003528 1.9e-10 70.5 89 64.0
Glyma.05G077200 Glycine max HOM05D003199 ORTHO05D003528 2.5e-10 70.1 93 39.8
Glyma.17G181000 Glycine max HOM05D003199 ORTHO05D003528 2.5e-10 70.1 96 52.1
VMungo1383G1719 Vigna mungo HOM05D003199 ORTHO05D003528 2.5e-10 70.1 110 50.0
Glyma.19G071300 Glycine max HOM05D003199 ORTHO05D003528 3.2e-10 69.7 93 54.8
Eucgr.I01653 Eucalyptus grandis HOM05D003199 ORTHO05D003528 4.2e-10 69.3 91 46.2
Glyma.19G090000 Glycine max HOM05D003199 ORTHO05D003528 4.2e-10 69.3 94 59.6
Lalb_Chr02g0157721 Lupinus albus HOM05D003199 ORTHO05D003528 4.2e-10 69.3 107 44.9
Oeu011754.1 Olea europaea HOM05D003199 ORTHO05D003528 4.2e-10 69.3 89 42.7
CAN.G473.92 Capsicum annuum HOM05D003199 ORTHO05D003528 7.1e-10 68.6 37 86.5
Sed0014935 Sechium edule HOM05D003199 ORTHO05D003528 9.3e-10 68.2 88 43.2
EL10Ac6g15370 Beta vulgaris HOM05D003199 ORTHO05D003528 1.2e-09 67.8 90 71.1
Sc07g0004150 Simmondsia chinensis HOM05D003199 ORTHO05D003528 1.2e-09 67.8 90 68.9
Oeu011964.1 Olea europaea HOM05D003199 ORTHO05D003528 1.6e-09 67.4 37 83.8
Solyc02g068090.3 Solanum lycopersicum HOM05D003199 ORTHO05D003528 1.6e-09 67.4 37 86.5
Sopen02g017200 Solanum pennellii HOM05D003199 ORTHO05D003528 1.6e-09 67.4 37 86.5
PGSC0003DMG400006976 Solanum tuberosum HOM05D003199 ORTHO05D003528 1.6e-09 67.4 37 86.5
CAN.G1491.4 Capsicum annuum HOM05D003199 ORTHO05D003528 2.7e-09 66.6 121 38.8
Atru.chr6.2549 Acer truncatum HOM05D003199 ORTHO05D003528 3.5e-09 66.2 37 81.1
Atru.chr6.2557 Acer truncatum HOM05D003199 ORTHO05D003528 3.5e-09 66.2 37 81.1
Gohir.A09G035300 Gossypium hirsutum HOM05D003199 ORTHO05D003528 3.5e-09 66.2 53 67.9
Gohir.D09G036100 Gossypium hirsutum HOM05D003199 ORTHO05D003528 3.5e-09 66.2 53 67.9
Gorai.006G041200 Gossypium raimondii HOM05D003199 ORTHO05D003528 3.5e-09 66.2 53 67.9
Oeu011963.1 Olea europaea HOM05D003199 ORTHO05D003528 3.5e-09 66.2 88 69.3
arahy.Tifrunner.gnm1.ann1.S1U1UA Arachis hypogaea HOM05D003199 ORTHO05D003528 4.6e-09 65.9 53 64.2
Manes.15G159800 Manihot esculenta HOM05D003199 ORTHO05D003528 4.6e-09 65.9 89 68.5
SalBow4G2736 Salvia bowleyana HOM05D003199 ORTHO05D003528 6.0e-09 65.5 88 70.5
Haze_14863 Corylus avellana HOM05D003199 ORTHO05D003528 7.9e-09 65.1 93 65.6
Migut.F00072 Erythranthe guttata HOM05D003199 ORTHO05D003528 7.9e-09 65.1 37 75.7
FvH4_6g53290 Fragaria vesca HOM05D003199 ORTHO05D003528 1.0e-08 64.7 108 58.3
FAN02G1758 Fragaria x ananassa HOM05D003199 ORTHO05D003528 1.0e-08 64.7 108 58.3
FAN05G2482 Fragaria x ananassa HOM05D003199 ORTHO05D003528 1.0e-08 64.7 108 58.3
FAN14G1306 Fragaria x ananassa HOM05D003199 ORTHO05D003528 1.0e-08 64.7 108 58.3
Lj2g0014633 Lotus japonicus HOM05D003199 ORTHO05D003528 1.3e-08 64.3 123 36.6
RcHm_v2.0_Chr2g0175441 Rosa chinensis HOM05D003199 ORTHO05D003528 1.3e-08 64.3 107 57.0
TAR374G1096 Trochodendron aralioides HOM05D003199 ORTHO05D003528 1.3e-08 64.3 104 60.6
TAR622G0507 Trochodendron aralioides HOM05D003199 ORTHO05D003528 1.3e-08 64.3 53 64.2
Hma1.2p1_1278F.1_g272370 Hydrangea macrophylla HOM05D003199 ORTHO05D003528 2.3e-08 63.5 90 67.8
Prupe.5G156900 Prunus persica HOM05D003199 ORTHO05D003528 2.3e-08 63.5 112 35.7
QL02p071628 Quercus lobata HOM05D003199 ORTHO05D003528 2.3e-08 63.5 35 82.9
Duzib205G0007 Durio zibethinus HOM05D003199 ORTHO05D003528 3.0e-08 63.2 88 55.7
ECA238G0300 Erigeron canadensis HOM05D000071 ORTHO05D000029 3.0e-08 63.2 42 76.2
Lj1g0002355 Lotus japonicus HOM05D003199 ORTHO05D003528 3.0e-08 63.2 92 67.4
Sabra16G0212600 Salix brachista HOM05D003199 ORTHO05D003528 3.0e-08 63.2 94 42.6
Actinidia36194 Actinidia chinensis HOM05D003199 ORTHO05D003528 6.7e-08 62.0 50 68.0
arahy.Tifrunner.gnm1.ann1.VRH5T3 Arachis hypogaea HOM05D003199 ORTHO05D003528 8.7e-08 61.6 50 64.0
DCAR_026209 Daucus carota HOM05D003199 ORTHO05D003528 8.7e-08 61.6 41 70.7
Aa31LG2G5470 Aethionema arabicum HOM05D003199 ORTHO05D003528 1.1e-07 61.2 92 42.4
Oeu044613.1 Olea europaea HOM05D003199 ORTHO05D003528 1.1e-07 61.2 87 55.2
Actinidia05917 Actinidia chinensis HOM05D003199 ORTHO05D003528 1.9e-07 60.5 38 76.3
Lalb_Chr24g0403341 Lupinus albus HOM05D003199 ORTHO05D003528 1.9e-07 60.5 106 48.1
Medtr7g029325 Medicago truncatula HOM05D003199 ORTHO05D003528 1.9e-07 60.5 105 35.2
Dinv33347 Davidia involucrata HOM05D003199 ORTHO05D003528 2.5e-07 60.1 88 68.2
Duzib147G1480 Durio zibethinus HOM05D003199 ORTHO05D003528 2.5e-07 60.1 53 58.5
Manes.17G103700 Manihot esculenta HOM05D003199 ORTHO05D003528 2.5e-07 60.1 38 76.3
CANSAT64G0211 Cannabis sativa HOM05D003199 ORTHO05D003528 3.3e-07 59.7 107 60.7
CiPaw.03G054500 Carya illinoinensis HOM05D003199 ORTHO05D003528 3.3e-07 59.7 47 66.0
Gohir.A07G053400 Gossypium hirsutum HOM05D003199 ORTHO05D003528 3.3e-07 59.7 53 60.4
Thecc.04G034700 Theobroma cacao HOM05D003199 ORTHO05D003528 3.3e-07 59.7 50 64.0
Aqoxy5G03579 Aquilegia oxysepala HOM05D003199 ORTHO05D003528 4.3e-07 59.3 110 37.3
AL5G16270 Arabidopsis lyrata HOM05D003199 ORTHO05D003528 4.3e-07 59.3 37 73.0
AT3G27160 Arabidopsis thaliana HOM05D003199 ORTHO05D003528 4.3e-07 59.3 37 73.0
BcaB04g19427 Brassica carinata HOM05D003199 ORTHO05D003528 4.3e-07 59.3 37 73.0
BcaB07g30185 Brassica carinata HOM05D003199 ORTHO05D003528 4.3e-07 59.3 37 73.0
BcaC03g17429 Brassica carinata HOM05D003199 ORTHO05D003528 4.3e-07 59.3 37 73.0
BcaC04g23918 Brassica carinata HOM05D003199 ORTHO05D003528 4.3e-07 59.3 37 73.0
A02p35140 Brassica napus HOM05D003199 ORTHO05D003528 4.3e-07 59.3 37 73.0
A09p03290 Brassica napus HOM05D003199 ORTHO05D003528 4.3e-07 59.3 37 73.0
C02p53770 Brassica napus HOM05D003199 ORTHO05D003528 4.3e-07 59.3 37 73.0
C09p03490 Brassica napus HOM05D003199 ORTHO05D003528 4.3e-07 59.3 37 73.0
BolC2t11446H Brassica oleracea HOM05D003199 ORTHO05D003528 4.3e-07 59.3 37 73.0
BolC9t53270H Brassica oleracea HOM05D003199 ORTHO05D003528 4.3e-07 59.3 37 73.0
BraA02t08519Z Brassica rapa HOM05D003199 ORTHO05D003528 4.3e-07 59.3 37 73.0
BraA09t35967Z Brassica rapa HOM05D003199 ORTHO05D003528 4.3e-07 59.3 37 73.0
Carub.0005s0539 Capsella rubella HOM05D003199 ORTHO05D003528 4.3e-07 59.3 37 73.0
CARHR148360 Cardamine hirsuta HOM05D003199 ORTHO05D003528 4.3e-07 59.3 37 73.0
COL.COLO4_17189 Corchorus olitorius HOM05D003199 ORTHO05D003528 4.3e-07 59.3 37 70.3
Dinv38468 Davidia involucrata HOM05D003199 ORTHO05D003528 4.3e-07 59.3 40 67.5
Thhalv10004988m.g Eutrema salsugineum HOM05D003199 ORTHO05D003528 4.3e-07 59.3 37 73.0
Gorai.001G061300 Gossypium raimondii HOM05D003199 ORTHO05D003528 4.3e-07 59.3 37 73.0
Sp2g16270 Schrenkiella parvula HOM05D003199 ORTHO05D003528 4.3e-07 59.3 37 73.0
THA.LOC104823979 Tarenaya hassleriana HOM05D003199 ORTHO05D003528 4.3e-07 59.3 93 49.5
Cfa007237 Carpinus fangiana HOM05D003199 ORTHO05D003528 5.7e-07 58.9 35 77.1
Eucgr.J02332 Eucalyptus grandis HOM05D003199 ORTHO05D003528 5.7e-07 58.9 93 59.1
Lj4g0002784 Lotus japonicus HOM05D003199 ORTHO05D003528 5.7e-07 58.9 93 38.7
Phvul.004G054500 Phaseolus vulgaris HOM05D003199 ORTHO05D003528 7.4e-07 58.5 93 59.1
Thecc.03G122900 Theobroma cacao HOM05D003199 ORTHO05D003528 7.4e-07 58.5 35 77.1
unitig_52.g17266 Utricularia gibba HOM05D000147 ORTHO05D001254 7.4e-07 58.5 34 79.4
Sc04g0000960 Simmondsia chinensis HOM05D003199 ORTHO05D003528 9.6e-07 58.2 76 43.4
AUR62001279 Chenopodium quinoa HOM05D003199 ORTHO05D003528 1.3e-06 57.8 102 35.3
PGR083G2579 Punica granatum HOM05D003199 ORTHO05D003528 1.3e-06 57.8 37 70.3
EL10Ac7g18075 Beta vulgaris HOM05D003199 ORTHO05D003528 1.6e-06 57.4 102 36.3
CiPaw.12G035800 Carya illinoinensis HOM05D003199 ORTHO05D003528 1.6e-06 57.4 103 54.4
Ca_05564_v3 Cicer arietinum L. HOM05D003199 ORTHO05D003528 2.1e-06 57.0 112 33.9
Peaxi162Scf00420g00566 Petunia axillaris HOM05D003199 ORTHO05D003528 2.1e-06 57.0 88 37.5
arahy.Tifrunner.gnm1.ann1.NFT2PX Arachis hypogaea HOM05D003199 ORTHO05D003528 2.8e-06 56.6 38 71.1
arahy.Tifrunner.gnm1.ann1.Z1YI97 Arachis hypogaea HOM05D003199 ORTHO05D003528 2.8e-06 56.6 38 71.1
Gohir.D07G057800 Gossypium hirsutum HOM05D003199 ORTHO05D003528 2.8e-06 56.6 53 58.5
Nitab4.5_0005418g0050 Nicotiana tabacum HOM05D003199 ORTHO05D003528 2.8e-06 56.6 41 65.9
Nitab4.5_0007150g0070 Nicotiana tabacum HOM05D003199 ORTHO05D003528 2.8e-06 56.6 80 62.5
Nitab4.5_0010637g0020 Nicotiana tabacum HOM05D003199 ORTHO05D003528 2.8e-06 56.6 41 65.9
VMungo0464G0590 Vigna mungo HOM05D003199 ORTHO05D003528 2.8e-06 56.6 36 69.4
CiPaw.04G036000 Carya illinoinensis HOM05D003199 ORTHO05D003528 3.7e-06 56.2 82 39.0
AUR62025727 Chenopodium quinoa HOM05D003199 ORTHO05D003528 3.7e-06 56.2 102 34.3
CiPaw.04G036100 Carya illinoinensis HOM05D003199 ORTHO05D003528 4.8e-06 55.8 39 69.2
MBI11_g19368_MAGBIO Magnolia biondii HOM05D003199 ORTHO05D003528 4.8e-06 55.8 36 69.4
Peaxi162Scf00881g00240 Petunia axillaris HOM05D003199 ORTHO05D003528 4.8e-06 55.8 30 86.7
Rhsim08G0043600 Rhododendron simsii HOM05D054388 ORTHO05D003528 4.8e-06 55.8 89 52.8
MSTRG.4586 Avicennia marina HOM05D003199 ORTHO05D003528 6.3e-06 55.5 88 37.5
PSO063G5134 Papaver somniferum HOM05D003199 ORTHO05D003528 6.3e-06 55.5 107 55.1
PSO782G3015 Papaver somniferum HOM05D003199 ORTHO05D003528 6.3e-06 55.5 107 55.1
Peaxi162Scf00089g00228 Petunia axillaris HOM05D003199 ORTHO05D003528 6.3e-06 55.5 76 43.4
CDE12G0833 Ceratophyllum demersum HOM05D003199 ORTHO05D003528 8.2e-06 55.1 88 64.8


User provided reference genes

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