Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA238G3641 Erigeron canadensis HOM05D007710 ORTHO05D004022 4.0e-113 411.4 198 100.0
ECA233G0318 Erigeron canadensis HOM05D007710 ORTHO05D004022 1.2e-11 74.3 37 83.8
HanXRQChr04g0105361 Helianthus annuus HOM05D007710 ORTHO05D004022 2.0e-11 73.6 40 77.5
Nitab4.5_0000021g0800 Nicotiana tabacum HOM05D007710 ORTHO05D004022 3.4e-11 72.8 43 69.8
Nitab4.5_0004530g0090 Nicotiana tabacum HOM05D007710 ORTHO05D004022 3.4e-11 72.8 43 69.8
Phvul.011G019000 Phaseolus vulgaris HOM05D007710 ORTHO05D004022 3.4e-11 72.8 43 69.8
Aqoxy3G02299 Aquilegia oxysepala HOM05D007710 ORTHO05D004022 5.7e-11 72.0 40 72.5
Solyc03g097200.3 Solanum lycopersicum HOM05D007710 ORTHO05D004022 7.5e-11 71.6 43 67.4
Sopen03g027960 Solanum pennellii HOM05D007710 ORTHO05D004022 7.5e-11 71.6 43 67.4
PGSC0003DMG400003164 Solanum tuberosum HOM05D007710 ORTHO05D004022 7.5e-11 71.6 43 67.4
PGSC0003DMG402026486 Solanum tuberosum HOM05D007710 ORTHO05D004022 7.5e-11 71.6 43 67.4
FvH4_7g34150 Fragaria vesca HOM05D007710 ORTHO05D004022 9.8e-11 71.2 40 72.5
FAN10G2135 Fragaria x ananassa HOM05D003442 ORTHO05D004005 9.8e-11 71.2 40 72.5
Glyma.12G016700 Glycine max HOM05D007710 ORTHO05D004022 9.8e-11 71.2 40 72.5
MD01G1238400 Malus domestica HOM05D007710 ORTHO05D004022 9.8e-11 71.2 40 72.5
TAR375G0377 Trochodendron aralioides HOM05D007710 ORTHO05D004022 9.8e-11 71.2 40 72.5
Actinidia08760 Actinidia chinensis HOM05D007710 ORTHO05D004022 1.3e-10 70.9 40 72.5
Hma1.2p1_0649F.1_g195220 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 1.3e-10 70.9 40 75.0
Peaxi162Scf00516g00641 Petunia axillaris HOM05D007710 ORTHO05D004022 1.3e-10 70.9 43 67.4
Potri.013G078866 Populus trichocarpa HOM05D007710 ORTHO05D004022 1.3e-10 70.9 40 72.5
RcHm_v2.0_Chr1g0384511 Rosa chinensis HOM05D007710 ORTHO05D004022 1.3e-10 70.9 40 72.5
CiPaw.06G035400 Carya illinoinensis HOM05D007710 ORTHO05D004022 1.7e-10 70.5 40 72.5
ClCG09G017200 Citrullus lanatus HOM05D007710 ORTHO05D004022 1.7e-10 70.5 40 75.0
Hma1.2p1_0649F.1_g195210 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 1.7e-10 70.5 41 70.7
Lsat_1_v5_gn_2_60801 Lactuca sativa HOM05D007710 ORTHO05D004022 1.7e-10 70.5 37 78.4
MD01G1238100 Malus domestica HOM05D007710 ORTHO05D004022 1.7e-10 70.5 40 72.5
GSVIVG01024345001 Vitis vinifera HOM05D007710 ORTHO05D004022 1.7e-10 70.5 40 72.5
FAN03G2015 Fragaria x ananassa HOM05D007710 ORTHO05D004022 2.2e-10 70.1 40 70.0
CSS0005120 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 2.8e-10 69.7 40 70.0
CSS0038916 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 2.8e-10 69.7 40 70.0
CAN.G1131.30 Capsicum annuum HOM05D007710 ORTHO05D004022 2.8e-10 69.7 40 72.5
DCAR_009023 Daucus carota HOM05D007710 ORTHO05D004022 2.8e-10 69.7 37 78.4
Glyma.11G108600 Glycine max HOM05D007710 ORTHO05D004022 2.8e-10 69.7 37 75.7
Manes.08G064400 Manihot esculenta HOM05D007710 ORTHO05D004022 2.8e-10 69.7 40 72.5
Prupe.2G328300 Prunus persica HOM05D007710 ORTHO05D004022 2.8e-10 69.7 40 72.5
TPR.G19627 Trifolium pratense HOM05D007710 ORTHO05D004022 2.8e-10 69.7 40 70.0
arahy.Tifrunner.gnm1.ann1.GY8AT6 Arachis hypogaea HOM05D007710 ORTHO05D004022 3.7e-10 69.3 40 70.0
arahy.Tifrunner.gnm1.ann1.U0IDC3 Arachis hypogaea HOM05D007710 ORTHO05D004022 3.7e-10 69.3 40 70.0
Lj3g0011322 Lotus japonicus HOM05D007710 ORTHO05D004022 3.7e-10 69.3 40 70.0
Sed0013213 Sechium edule HOM05D007710 ORTHO05D004022 3.7e-10 69.3 40 72.5
Mapoly0120s0048 Marchantia polymorpha HOM05D007710 ORTHO05D004022 4.9e-10 68.9 43 62.8
Medtr4g478210 Medicago truncatula HOM05D007710 ORTHO05D004022 4.9e-10 68.9 40 70.0
Rhsim03G0223400 Rhododendron simsii HOM05D007710 ORTHO05D004022 4.9e-10 68.9 40 70.0
Cfa016067 Carpinus fangiana HOM05D003442 ORTHO05D004005 8.3e-10 68.2 40 70.0
Ciclev10033194m.g Citrus clementina HOM05D007710 ORTHO05D004022 8.3e-10 68.2 40 70.0
Haze_00383 Corylus avellana HOM05D007710 ORTHO05D004022 8.3e-10 68.2 40 70.0
CsaV3_2G036650 Cucumis sativus L. HOM05D007710 ORTHO05D004022 1.4e-09 67.4 40 70.0
TWI32G0404 Tripterygium wilfordii HOM05D007710 ORTHO05D004022 1.4e-09 67.4 40 67.5
HPP92_014617 Vanilla planifolia HOM05D007710 ORTHO05D004022 1.4e-09 67.4 40 67.5
Cc02_g00160 Coffea canephora HOM05D007710 ORTHO05D004022 1.8e-09 67.0 37 75.7
MELO3C021857.2 Cucumis melo HOM05D007710 ORTHO05D004022 1.8e-09 67.0 40 70.0
Duzib128G0150 Durio zibethinus HOM05D007710 ORTHO05D004022 1.8e-09 67.0 40 70.0
Eucgr.A02986 Eucalyptus grandis HOM05D007710 ORTHO05D004022 1.8e-09 67.0 40 70.0
PSO063G4155 Papaver somniferum HOM05D007710 ORTHO05D004022 2.4e-09 66.6 40 70.0
PSO782G0287 Papaver somniferum HOM05D007710 ORTHO05D004022 2.4e-09 66.6 40 70.0
Atru.chr12.1914 Acer truncatum HOM05D007710 ORTHO05D004022 3.1e-09 66.2 40 65.0
Nn6g33555 Nelumbo nucifera HOM05D007710 ORTHO05D004022 3.1e-09 66.2 40 67.5
Psat7g170120 Pisum sativum HOM05D007710 ORTHO05D004022 3.1e-09 66.2 43 62.8
PGR042G1372 Punica granatum HOM05D007710 ORTHO05D004022 3.1e-09 66.2 40 67.5
SalBow2G0781 Salvia bowleyana HOM05D007710 ORTHO05D004022 3.1e-09 66.2 40 67.5
Hund09805 Selenicereus undatus HOM05D007710 ORTHO05D004022 4.1e-09 65.9 43 60.5
Manes.09G128500 Manihot esculenta HOM05D007710 ORTHO05D004022 5.4e-09 65.5 37 75.7
Pp3c5_4790 Physcomitrium patens HOM05D007710 ORTHO05D004022 5.4e-09 65.5 40 67.5
ATR0057G097 Amborella trichopoda HOM05D007710 ORTHO05D004022 7.0e-09 65.1 40 65.0
BcaB03g15335 Brassica carinata HOM05D007710 ORTHO05D004022 7.0e-09 65.1 37 73.0
A07p32740 Brassica napus HOM05D007710 ORTHO05D004022 7.0e-09 65.1 37 73.0
BraA07t30900Z Brassica rapa HOM05D007710 ORTHO05D004022 7.0e-09 65.1 37 73.0
BolC6t38987H Brassica oleracea HOM05D007710 ORTHO05D004022 9.2e-09 64.7 36 72.2
MD06G1024400 Malus domestica HOM05D007710 ORTHO05D004022 9.2e-09 64.7 40 65.0
Sp5g19360 Schrenkiella parvula HOM05D007710 ORTHO05D004022 9.2e-09 64.7 37 73.0
Thecc.05G219200 Theobroma cacao HOM05D007710 ORTHO05D004022 9.2e-09 64.7 40 67.5
unitig_747.g21335 Utricularia gibba HOM05D007710 ORTHO05D004022 9.2e-09 64.7 43 62.8
Aa31LG2G2200 Aethionema arabicum HOM05D007710 ORTHO05D004022 1.2e-08 64.3 37 73.0
Migut.F00935 Erythranthe guttata HOM05D007710 ORTHO05D004022 1.2e-08 64.3 43 62.8
Gohir.A13G101700 Gossypium hirsutum HOM05D007710 ORTHO05D004022 1.2e-08 64.3 40 67.5
COL.COLO4_15187 Corchorus olitorius HOM05D007710 ORTHO05D004022 1.6e-08 63.9 37 70.3
AUR62028202 Chenopodium quinoa HOM05D007710 ORTHO05D004022 3.5e-08 62.8 37 70.3
AT1G65000 Arabidopsis thaliana HOM05D007710 ORTHO05D004022 4.5e-08 62.4 37 70.3
EL10Ac3g05053 Beta vulgaris HOM05D007710 ORTHO05D004022 4.5e-08 62.4 43 60.5
C06p38950 Brassica napus HOM05D007710 ORTHO05D004022 4.5e-08 62.4 34 73.5
CARHR056450 Cardamine hirsuta HOM05D007710 ORTHO05D004022 5.9e-08 62.0 37 70.3
CARHR057330 Cardamine hirsuta HOM05D007710 ORTHO05D004022 5.9e-08 62.0 37 70.3
SMO347G0449 Selaginella moellendorffii HOM05D007710 ORTHO05D004022 5.9e-08 62.0 42 61.9
THA.LOC104805715 Tarenaya hassleriana HOM05D007710 ORTHO05D004022 5.9e-08 62.0 37 67.6
AL2G19620 Arabidopsis lyrata HOM05D007710 ORTHO05D004022 1.3e-07 60.8 37 67.6
Os03g0857750 Oryza sativa ssp. japonica HOM05D007710 ORTHO05D004022 2.9e-07 59.7 37 64.9
Ah.04g156350 Amaranthus hybridus HOM05D007710 ORTHO05D004022 3.8e-07 59.3 40 57.5
RcHm_v2.0_Chr2g0135851 Rosa chinensis HOM05D007710 ORTHO05D004022 4.3e-06 55.8 37 62.2


User provided reference genes

Program Settings