Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA238G3169 Erigeron canadensis HOM05D004255 ORTHO05D004815 6.1e-53 212.6 106 100.0
HanXRQChr07g0206501 Helianthus annuus HOM05D004255 ORTHO05D004815 3.2e-25 120.6 72 80.6
Lsat_1_v5_gn_2_106641 Lactuca sativa HOM05D004255 ORTHO05D004815 3.2e-25 120.6 78 73.1
DCAR_014992 Daucus carota HOM05D004255 ORTHO05D004815 1.5e-19 101.7 70 67.1
Nitab4.5_0001297g0090 Nicotiana tabacum HOM05D004255 ORTHO05D004815 9.9e-19 99.0 100 48.0
CARHR120730 Cardamine hirsuta HOM05D004255 ORTHO05D004815 3.2e-17 94.0 108 46.3
Carub.0004s0880 Capsella rubella HOM05D004255 ORTHO05D004815 9.3e-17 92.4 108 47.2
AL4G22170 Arabidopsis lyrata HOM05D004255 ORTHO05D004815 1.2e-16 92.0 108 45.4
Solyc10g084090.3 Solanum lycopersicum HOM05D004255 ORTHO05D004815 4.6e-16 90.1 71 63.4
AT2G28050 Arabidopsis thaliana HOM05D004255 ORTHO05D004815 1.0e-15 89.0 108 45.4
MELO3C009348.2 Cucumis melo HOM05D004255 ORTHO05D004815 1.7e-15 88.2 102 47.1
PGSC0003DMG400010458 Solanum tuberosum HOM05D004255 ORTHO05D004815 1.7e-15 88.2 69 63.8
Ah.08g211800 Amaranthus hybridus HOM05D004255 ORTHO05D004815 3.0e-15 87.4 93 44.1
CsaV3_3G035890 Cucumis sativus L. HOM05D004255 ORTHO05D004815 3.9e-15 87.0 105 44.8
QL09p049934 Quercus lobata HOM05D004255 ORTHO05D004815 3.9e-15 87.0 103 43.7
Sopen10g033550 Solanum pennellii HOM05D004255 ORTHO05D004815 3.9e-15 87.0 70 61.4
Peaxi162Scf00311g00013 Petunia axillaris HOM05D004255 ORTHO05D004815 6.6e-15 86.3 70 57.1
Eucgr.K03591 Eucalyptus grandis HOM05D004255 ORTHO05D004815 1.1e-14 85.5 96 47.9
TPR.G23963 Trifolium pratense HOM05D004255 ORTHO05D004815 1.5e-14 85.1 90 48.9
Lsat_1_v5_gn_2_99540 Lactuca sativa HOM05D004255 ORTHO05D004815 1.9e-14 84.7 102 42.2
PGSC0003DMG401010456 Solanum tuberosum HOM05D004255 ORTHO05D004815 1.9e-14 84.7 80 52.5
Dinv37304 Davidia involucrata HOM05D004255 ORTHO05D004815 2.5e-14 84.3 71 59.2
Nitab4.5_0001297g0100 Nicotiana tabacum HOM05D004255 ORTHO05D004815 3.3e-14 84.0 70 55.7
Sopen10g033540 Solanum pennellii HOM05D004255 ORTHO05D004815 3.3e-14 84.0 76 52.6
CAN.G1169.8 Capsicum annuum HOM05D004255 ORTHO05D004815 4.3e-14 83.6 69 62.3
Nitab4.5_0005518g0020 Nicotiana tabacum HOM05D004255 ORTHO05D004815 1.3e-13 82.0 68 54.4
Manes.13G072800 Manihot esculenta HOM05D004255 ORTHO05D004815 1.6e-13 81.6 80 51.2
PGR083G1347 Punica granatum HOM05D004255 ORTHO05D004815 2.1e-13 81.3 101 46.5
Rhsim04G0144500 Rhododendron simsii HOM05D004255 ORTHO05D004815 2.1e-13 81.3 67 61.2
Sp4g10830 Schrenkiella parvula HOM05D004255 ORTHO05D004815 2.1e-13 81.3 103 45.6
arahy.Tifrunner.gnm1.ann1.RBUQ0I Arachis hypogaea HOM05D004255 ORTHO05D004815 3.6e-13 80.5 90 45.6
HanXRQChr02g0053431 Helianthus annuus HOM05D004255 ORTHO05D004815 4.8e-13 80.1 58 70.7
Atru.chr13.2607 Acer truncatum HOM05D004255 ORTHO05D004815 8.1e-13 79.3 86 43.0
Aa31LG5G4720 Aethionema arabicum HOM05D004255 ORTHO05D004815 8.1e-13 79.3 60 63.3
Glyma.19G000100 Glycine max HOM05D004255 ORTHO05D004815 8.1e-13 79.3 90 45.6
Medtr1g045880 Medicago truncatula HOM05D004255 ORTHO05D004815 8.1e-13 79.3 90 46.7
Thhalv10016624m.g Eutrema salsugineum HOM05D004255 ORTHO05D004815 1.8e-12 78.2 107 41.1
CANSAT54G2410 Cannabis sativa HOM05D004255 ORTHO05D004815 2.4e-12 77.8 106 38.7
CARHR004520 Cardamine hirsuta HOM05D004255 ORTHO05D004815 2.4e-12 77.8 65 60.0
Lj4g0021155 Lotus japonicus HOM05D004255 ORTHO05D004815 2.4e-12 77.8 114 40.4
Sc20g0005250 Simmondsia chinensis HOM05D004255 ORTHO05D004815 2.4e-12 77.8 64 57.8
FAN05G2535 Fragaria x ananassa HOM05D004255 ORTHO05D004815 4.0e-12 77.0 93 39.8
Duzib168G2269 Durio zibethinus HOM05D004255 ORTHO05D004815 1.5e-11 75.1 78 47.4
BcaB02g10133 Brassica carinata HOM05D004255 ORTHO05D004815 2.0e-11 74.7 103 44.7
FAN02G2222 Fragaria x ananassa HOM05D004255 ORTHO05D004815 2.0e-11 74.7 90 38.9
Ca_11878_v3 Cicer arietinum L. HOM05D004255 ORTHO05D004815 2.6e-11 74.3 87 49.4
Lj2P116T30 Lonicera japonica HOM05D004255 ORTHO05D004815 3.4e-11 73.9 57 59.6
SalBow3G3143 Salvia bowleyana HOM05D004255 ORTHO05D004815 4.4e-11 73.6 92 42.4
FAN09G2699 Fragaria x ananassa HOM05D004255 ORTHO05D004815 5.8e-11 73.2 93 38.7
CSS0008426 Camellia sinensis var. sinensis HOM05D004255 ORTHO05D004815 7.6e-11 72.8 53 67.9
FvH4_6g16190 Fragaria vesca HOM05D004255 ORTHO05D004815 9.9e-11 72.4 90 37.8
FAN14G1284 Fragaria x ananassa HOM05D004255 ORTHO05D004815 9.9e-11 72.4 90 37.8
SalBow2G0953 Salvia bowleyana HOM05D004255 ORTHO05D004815 1.7e-10 71.6 92 41.3
VMungo0720G0391 Vigna mungo HOM05D004255 ORTHO05D004815 1.7e-10 71.6 95 42.1
Atru.chr12.340 Acer truncatum HOM05D004255 ORTHO05D004815 2.2e-10 71.2 70 48.6
QL07p044001 Quercus lobata HOM05D004255 ORTHO05D004815 2.2e-10 71.2 60 55.0
Duzib106G1941 Durio zibethinus HOM05D004255 ORTHO05D004815 2.9e-10 70.9 70 47.1
RcHm_v2.0_Chr5g0058011 Rosa chinensis HOM05D004255 ORTHO05D004815 2.9e-10 70.9 99 34.3
Phvul.007G232500 Phaseolus vulgaris HOM05D004255 ORTHO05D004815 4.9e-10 70.1 90 43.3
Duzib170G0445 Durio zibethinus HOM05D004255 ORTHO05D004815 6.4e-10 69.7 69 49.3
TAR633G0618 Trochodendron aralioides HOM05D004255 ORTHO05D004815 6.4e-10 69.7 89 43.8
Ciclev10011284m.g Citrus clementina HOM05D004255 ORTHO05D004815 8.4e-10 69.3 61 52.5
SalBow2G0603 Salvia bowleyana HOM05D004255 ORTHO05D004815 8.4e-10 69.3 92 40.2
Thecc.09G346900 Theobroma cacao HOM05D004255 ORTHO05D004815 8.4e-10 69.3 71 47.9
BolC4t23855H Brassica oleracea HOM05D004255 ORTHO05D004815 3.2e-09 67.4 96 42.7
Cc06_g04130 Coffea canephora HOM05D004255 ORTHO05D004815 3.2e-09 67.4 66 50.0
Gohir.D09G143800 Gossypium hirsutum HOM05D004255 ORTHO05D004815 5.4e-09 66.6 70 47.1
Gorai.006G165100 Gossypium raimondii HOM05D004255 ORTHO05D004815 5.4e-09 66.6 70 47.1
Lalb_Chr11g0073041 Lupinus albus HOM05D004255 ORTHO05D004815 9.3e-09 65.9 71 50.7
CiPaw.09G173800 Carya illinoinensis HOM05D004255 ORTHO05D004815 1.6e-08 65.1 69 47.8
Atru.chr12.311 Acer truncatum HOM05D004255 ORTHO05D004815 4.6e-08 63.5 68 48.5
Atru.chr8.977 Acer truncatum HOM05D004255 ORTHO05D004815 1.3e-07 62.0 70 45.7
ClCG02G021360 Citrullus lanatus HOM05D004255 ORTHO05D004815 1.3e-07 62.0 80 45.0
Sabra03G0004500 Salix brachista HOM05D004255 ORTHO05D004815 1.3e-07 62.0 63 44.4
Glyma.20G081700 Glycine max HOM05D004255 ORTHO05D004815 3.9e-07 60.5 70 45.7
TWI75G0856 Tripterygium wilfordii HOM05D004255 ORTHO05D004815 3.9e-07 60.5 62 48.4
FAN16G3598 Fragaria x ananassa HOM05D004255 ORTHO05D004815 6.6e-07 59.7 99 31.3
BcaC02g10932 Brassica carinata HOM05D004255 ORTHO05D004815 8.7e-07 59.3 93 38.7
C04p23520 Brassica napus HOM05D004255 ORTHO05D004815 8.7e-07 59.3 93 38.7
Solyc10g084080.3 Solanum lycopersicum HOM05D023770 ORTHO05D024770 1.5e-06 58.5 67 43.3
HPP92_026817 Vanilla planifolia HOM05D004255 ORTHO05D004815 1.5e-06 58.5 76 36.8
GSVIVG01025719001 Vitis vinifera HOM05D004255 ORTHO05D004815 2.5e-06 57.8 61 47.5
Cfa011366 Carpinus fangiana HOM05D004255 ORTHO05D004815 4.3e-06 57.0 58 48.3
SalBow7G4426 Salvia bowleyana HOM05D007639 ORTHO05D009509 5.6e-06 56.6 95 35.8
Aa31LG5G8100 Aethionema arabicum HOM05D004255 ORTHO05D004815 7.3e-06 56.2 107 32.7
SalBow7G0144 Salvia bowleyana HOM05D007639 ORTHO05D009509 7.3e-06 56.2 95 34.7


User provided reference genes

Program Settings