Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA238G3150 Erigeron canadensis HOM05D004996 ORTHO05D005844 2.1e-169 599.0 306 100.0
HanXRQChr14g0442821 Helianthus annuus HOM05D004996 ORTHO05D005844 7.0e-117 424.5 282 75.2
Lsat_1_v5_gn_2_84140 Lactuca sativa HOM05D004996 ORTHO05D005844 1.3e-115 420.2 281 76.5
Lj7A69G43 Lonicera japonica HOM05D004996 ORTHO05D005844 8.6e-99 364.4 270 66.7
Prupe.7G133700 Prunus persica HOM05D004996 ORTHO05D005844 1.5e-98 363.6 288 65.6
Cfa004020 Carpinus fangiana HOM05D004996 ORTHO05D005844 4.3e-98 362.1 298 63.1
MD15G1283600 Malus domestica HOM05D004996 ORTHO05D005844 7.3e-98 361.3 272 68.8
GSVIVG01022135001 Vitis vinifera HOM05D004996 ORTHO05D005844 7.3e-98 361.3 269 66.2
Hma1.2p1_0200F.1_g085840 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 8.1e-97 357.8 283 66.8
Hma1.2p1_2839F.1_g329295 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 8.1e-97 357.8 283 66.8
FAN10G3007 Fragaria x ananassa HOM05D004996 ORTHO05D005844 5.2e-96 355.1 289 65.4
FvH4_7g06480 Fragaria vesca HOM05D004996 ORTHO05D005844 4.4e-95 352.1 287 64.8
RcHm_v2.0_Chr1g0334851 Rosa chinensis HOM05D004996 ORTHO05D005844 7.6e-95 351.3 304 62.2
Haze_16997 Corylus avellana HOM05D004996 ORTHO05D005844 9.9e-95 350.9 268 66.8
Haze_16999 Corylus avellana HOM05D004996 ORTHO05D005844 3.8e-94 349.0 268 66.4
QL06p041440 Quercus lobata HOM05D004996 ORTHO05D005844 4.9e-94 348.6 270 66.7
DCAR_021441 Daucus carota HOM05D004996 ORTHO05D005844 6.4e-94 348.2 263 66.5
FAN06G0805 Fragaria x ananassa HOM05D004996 ORTHO05D005844 6.4e-94 348.2 263 68.1
Nitab4.5_0001064g0040 Nicotiana tabacum HOM05D004996 ORTHO05D005844 1.9e-93 346.7 285 60.7
CiPaw.02G008500 Carya illinoinensis HOM05D004996 ORTHO05D005844 9.2e-93 344.4 298 60.1
Sabra07G0038500 Salix brachista HOM05D004996 ORTHO05D005844 9.2e-93 344.4 278 63.3
TWI73G1146 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 1.2e-92 344.0 292 61.6
Potri.007G043600 Populus trichocarpa HOM05D004996 ORTHO05D005844 2.7e-92 342.8 276 62.3
Nitab4.5_0000033g0420 Nicotiana tabacum HOM05D004996 ORTHO05D005844 7.8e-92 341.3 285 59.3
COL.COLO4_11407 Corchorus olitorius HOM05D004996 ORTHO05D005844 1.3e-91 340.5 264 63.6
CAN.G11.7 Capsicum annuum HOM05D004996 ORTHO05D005844 1.7e-91 340.1 288 58.0
Rhsim08G0100700 Rhododendron simsii HOM05D004996 ORTHO05D005844 3.9e-91 339.0 323 59.1
Duzib147G0592 Durio zibethinus HOM05D004996 ORTHO05D005844 3.3e-90 335.9 309 55.7
Manes.13G124600 Manihot esculenta HOM05D004996 ORTHO05D005844 4.3e-90 335.5 274 63.1
Gohir.D11G198600 Gossypium hirsutum HOM05D004996 ORTHO05D005844 7.3e-90 334.7 279 59.5
Thecc.01G055400 Theobroma cacao HOM05D004996 ORTHO05D005844 1.2e-89 334.0 290 60.0
FAN01G0777 Fragaria x ananassa HOM05D004996 ORTHO05D005844 1.6e-89 333.6 304 60.5
Ciclev10026041m.g Citrus clementina HOM05D004996 ORTHO05D005844 2.1e-89 333.2 303 57.8
Gohir.A11G192100 Gossypium hirsutum HOM05D004996 ORTHO05D005844 2.8e-89 332.8 306 55.6
Sc07g0000030 Simmondsia chinensis HOM05D004996 ORTHO05D005844 2.8e-89 332.8 300 58.7
Cc03_g11370 Coffea canephora HOM05D004996 ORTHO05D005844 3.6e-89 332.4 285 59.6
Migut.H00434 Erythranthe guttata HOM05D004996 ORTHO05D005844 3.6e-89 332.4 309 55.7
Ah.02g120540 Amaranthus hybridus HOM05D004996 ORTHO05D005844 1.1e-88 330.9 276 59.8
Duzib187G0496 Durio zibethinus HOM05D004996 ORTHO05D005844 1.1e-88 330.9 308 55.5
Glyma.02G301700 Glycine max HOM05D004996 ORTHO05D005844 1.4e-88 330.5 279 60.6
VMungo0647G1648 Vigna mungo HOM05D004996 ORTHO05D005844 1.4e-88 330.5 313 57.8
PGSC0003DMG400018987 Solanum tuberosum HOM05D004996 ORTHO05D005844 2.4e-88 329.7 267 60.3
Gorai.007G212700 Gossypium raimondii HOM05D004996 ORTHO05D005844 3.1e-88 329.3 274 60.2
LjContig00272g0020566 Lotus japonicus HOM05D004996 ORTHO05D005844 4.0e-88 328.9 272 61.0
Solyc03g044470.4 Solanum lycopersicum HOM05D004996 ORTHO05D005844 6.9e-88 328.2 282 57.4
Glyma.14G012500 Glycine max HOM05D004996 ORTHO05D005844 1.2e-87 327.4 268 61.6
Oeu004826.1 Olea europaea HOM05D004996 ORTHO05D005844 1.5e-87 327.0 304 54.9
LjContig00272g0002438 Lotus japonicus HOM05D004996 ORTHO05D005844 2.0e-87 326.6 272 60.7
SalBow6G7153 Salvia bowleyana HOM05D004996 ORTHO05D005844 2.0e-87 326.6 286 57.3
Actinidia16491 Actinidia chinensis HOM05D004996 ORTHO05D005844 4.4e-87 325.5 268 62.3
Phvul.008G280200 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 5.8e-87 325.1 320 55.9
Sopen03g008630 Solanum pennellii HOM05D004996 ORTHO05D005844 5.8e-87 325.1 282 56.7
AUR62003879 Chenopodium quinoa HOM05D004996 ORTHO05D005844 2.9e-86 322.8 276 58.7
Eucgr.I00930 Eucalyptus grandis HOM05D004996 ORTHO05D005844 4.9e-86 322.0 264 61.4
MSTRG.23749 Avicennia marina HOM05D004996 ORTHO05D005844 1.9e-85 320.1 290 57.2
EL10Ac6g15748 Beta vulgaris HOM05D004996 ORTHO05D005844 2.4e-85 319.7 304 55.9
CANSAT01G2652 Cannabis sativa HOM05D004996 ORTHO05D005844 3.2e-85 319.3 262 61.5
LjContig00081g0020523 Lotus japonicus HOM05D004996 ORTHO05D005844 7.1e-85 318.2 278 59.7
Peaxi162Scf00685g00059 Petunia axillaris HOM05D004996 ORTHO05D005844 7.1e-85 318.2 308 54.5
PGR004G2460 Punica granatum HOM05D004996 ORTHO05D005844 9.3e-85 317.8 267 59.6
Phvul.008G280300 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 1.2e-84 317.4 273 60.8
TAR376G0493 Trochodendron aralioides HOM05D004996 ORTHO05D005844 4.6e-84 315.5 291 57.7
Medtr5g096150 Medicago truncatula HOM05D004996 ORTHO05D005844 6.0e-84 315.1 283 56.2
vmacro17952 Vaccinium macrocarpon HOM05D004996 ORTHO05D005844 1.0e-83 314.3 316 56.0
MELO3C020912.2 Cucumis melo HOM05D004996 ORTHO05D005844 3.9e-83 312.4 300 52.7
Lalb_Chr17g0348991 Lupinus albus HOM05D004996 ORTHO05D005844 1.5e-82 310.5 264 60.6
arahy.Tifrunner.gnm1.ann1.X0LXK2 Arachis hypogaea HOM05D004996 ORTHO05D005844 2.5e-82 309.7 279 55.6
CANSAT11G1602 Cannabis sativa HOM05D004996 ORTHO05D005844 5.6e-82 308.5 267 59.6
Ca_05570_v3 Cicer arietinum L. HOM05D004996 ORTHO05D005844 5.6e-82 308.5 279 54.5
CsaV3_2G016730 Cucumis sativus L. HOM05D004996 ORTHO05D005844 9.6e-82 307.8 298 51.7
CANSAT11G2671 Cannabis sativa HOM05D004996 ORTHO05D005844 1.3e-81 307.4 267 59.2
Nn7g36483 Nelumbo nucifera HOM05D004996 ORTHO05D005844 1.3e-81 307.4 292 56.2
Psat2g006800 Pisum sativum HOM05D004996 ORTHO05D005844 1.6e-81 307.0 280 53.6
Sed0024126 Sechium edule HOM05D004996 ORTHO05D005844 2.8e-81 306.2 303 51.5
Thhalv10025731m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 3.1e-80 302.8 293 53.6
ClCG02G012610 Citrullus lanatus HOM05D004996 ORTHO05D005844 9.0e-80 301.2 300 51.3
Cpa.g.sc55.151 Carica papaya HOM05D004996 ORTHO05D005844 2.0e-79 300.1 310 52.9
CARHR245500 Cardamine hirsuta HOM05D004996 ORTHO05D005844 1.7e-78 297.0 266 56.0
Sp7g34760 Schrenkiella parvula HOM05D004996 ORTHO05D005844 1.9e-77 293.5 266 56.0
TPR.G36603 Trifolium pratense HOM05D004996 ORTHO05D005844 5.4e-77 292.0 278 52.5
Aqoxy5G01233 Aquilegia oxysepala HOM05D004996 ORTHO05D005844 9.3e-77 291.2 283 52.7
AL7G13770 Arabidopsis lyrata HOM05D004996 ORTHO05D005844 2.7e-76 289.7 265 55.1
C01p02010 Brassica napus HOM05D004996 ORTHO05D005844 2.7e-76 289.7 311 51.1
Carub.0007s0320 Capsella rubella HOM05D004996 ORTHO05D005844 1.3e-75 287.3 268 54.5
Hund13551 Selenicereus undatus HOM05D004996 ORTHO05D005844 1.3e-75 287.3 288 52.8
AT4G37000 Arabidopsis thaliana HOM05D004996 ORTHO05D005844 1.8e-75 287.0 265 55.1
Aa31LG6G13970 Aethionema arabicum HOM05D004996 ORTHO05D005844 2.3e-75 286.6 266 53.8
QL06p041448 Quercus lobata HOM05D004996 ORTHO05D005844 2.3e-75 286.6 300 49.3
A01p01870 Brassica napus HOM05D004996 ORTHO05D005844 3.0e-75 286.2 305 50.2
THA.LOC104807582 Tarenaya hassleriana HOM05D004996 ORTHO05D005844 3.0e-75 286.2 303 50.2
Thhalv10027846m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 1.1e-74 284.3 267 53.9
BraA01t00176Z Brassica rapa HOM05D004996 ORTHO05D005844 1.5e-74 283.9 304 50.0
PSO170G3325 Papaver somniferum HOM05D004996 ORTHO05D005844 1.6e-73 280.4 264 53.4
Thhalv10027845m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 2.1e-73 280.0 267 53.6
PSO210G5017 Papaver somniferum HOM05D004996 ORTHO05D005844 2.1e-73 280.0 266 52.6
Dinv29984 Davidia involucrata HOM05D004996 ORTHO05D005844 1.1e-72 277.7 227 63.4
Cfa004018 Carpinus fangiana HOM05D004996 ORTHO05D005844 3.4e-71 272.7 297 50.5
BolC1t00195H Brassica oleracea HOM05D004996 ORTHO05D005844 1.7e-70 270.4 345 45.5
ClCG02G012600 Citrullus lanatus HOM05D004996 ORTHO05D005844 2.2e-70 270.0 280 47.9
Haze_15405 Corylus avellana HOM05D004996 ORTHO05D005844 2.9e-70 269.6 285 51.9
Atru.chr3.335 Acer truncatum HOM05D004996 ORTHO05D005844 4.9e-70 268.9 280 49.6
SGA_v2.0_scaffold15G07296 Striga asiatica HOM05D004996 ORTHO05D005844 8.4e-70 268.1 257 54.9
CiPaw.01G018500 Carya illinoinensis HOM05D004996 ORTHO05D005844 1.1e-69 267.7 291 50.2
unitig_736.g22663 Utricularia gibba HOM05D004996 ORTHO05D005844 1.1e-69 267.7 293 49.1
TWI53G0428 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 4.2e-69 265.8 264 51.1
Hma1.2p1_0200F.1_g085860 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 9.3e-69 264.6 202 68.8
Hma1.2p1_2839F.1_g329298 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 9.3e-69 264.6 202 68.8
CsaV3_2G016720 Cucumis sativus L. HOM05D004996 ORTHO05D005844 2.1e-68 263.5 293 47.1
Potri.007G043700 Populus trichocarpa HOM05D004996 ORTHO05D005844 2.1e-68 263.5 268 51.1
BcaNung02518 Brassica carinata HOM05D004996 ORTHO05D005844 3.5e-68 262.7 267 50.9
CDE02G3886 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 1.3e-67 260.8 287 48.8
CDE02G2298 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 2.3e-67 260.0 282 48.9
CSS0031276 Camellia sinensis var. sinensis HOM05D004996 ORTHO05D005844 3.9e-67 259.2 196 68.9
MELO3C020913.2 Cucumis melo HOM05D004996 ORTHO05D005844 3.9e-67 259.2 280 46.4
Sed0020584 Sechium edule HOM05D004996 ORTHO05D005844 8.7e-67 258.1 306 45.4
Ciclev10026248m.g Citrus clementina HOM05D004996 ORTHO05D005844 1.6e-65 253.8 264 51.1
Ah.06g186350 Amaranthus hybridus HOM05D004996 ORTHO05D005844 4.8e-65 252.3 267 50.9
HPP92_028287 Vanilla planifolia HOM05D004996 ORTHO05D005844 4.8e-65 252.3 264 49.6
TPR.G36604 Trifolium pratense HOM05D004996 ORTHO05D005844 5.3e-64 248.8 201 61.2
HanXRQChr14g0442841 Helianthus annuus HOM05D004996 ORTHO05D005844 2.2e-62 243.4 174 69.5
Sabra07G0038400 Salix brachista HOM05D004996 ORTHO05D005844 4.6e-60 235.7 268 49.6
Potri.007G043500 Populus trichocarpa HOM05D004996 ORTHO05D005844 3.9e-59 232.6 235 51.1
TWI09G1278 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 1.1e-58 231.1 252 49.2
ATR0009G017 Amborella trichopoda HOM05D004996 ORTHO05D005844 2.5e-58 229.9 290 43.4
Hund13537 Selenicereus undatus HOM05D004996 ORTHO05D005844 1.8e-56 223.8 282 44.7
Atru.chr3.332 Acer truncatum HOM05D004996 ORTHO05D005844 8.5e-54 214.9 208 53.4
Zm00001eb027950 Zea mays HOM05D004996 ORTHO05D005844 1.9e-53 213.8 318 39.6
SMO348G0076 Selaginella moellendorffii HOM05D004996 ORTHO05D005844 2.1e-52 210.3 260 42.3
AagrBONN_evm.TU.Sc2ySwM_368.2728 Anthoceros agrestis HOM05D004996 ORTHO05D005844 6.1e-52 208.8 305 40.7
Os10g0389200 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 1.0e-51 208.0 313 40.6
AUR62001931 Chenopodium quinoa HOM05D004996 ORTHO05D005844 1.1e-48 198.0 176 58.0
Hund13538 Selenicereus undatus HOM05D004996 ORTHO05D005844 4.1e-48 196.1 289 39.8
Pp3c15_3570 Physcomitrium patens HOM05D004996 ORTHO05D005844 1.2e-47 194.5 264 39.8
AagrBONN_evm.TU.Sc2ySwM_340.386 Anthoceros agrestis HOM05D004996 ORTHO05D005844 4.5e-47 192.6 260 40.4
Mapoly0002s0316 Marchantia polymorpha HOM05D004996 ORTHO05D005844 1.4e-45 187.6 259 40.9
Mapoly0007s0155 Marchantia polymorpha HOM05D004996 ORTHO05D005844 1.4e-43 181.0 263 38.8
Os10g0389300 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 8.0e-28 128.6 206 36.4
Dinv39853 Davidia involucrata HOM05D004996 ORTHO05D005844 1.8e-27 127.5 98 66.3
HPP92_019276 Vanilla planifolia HOM05D004996 ORTHO05D005844 5.5e-21 105.9 123 45.5
Hma1.2p1_0200F.1_g085850 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 6.8e-19 99.0 82 62.2
Hma1.2p1_2839F.1_g329297 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 6.8e-19 99.0 82 62.2
Mapoly0002s0315 Marchantia polymorpha HOM05D004996 ORTHO05D005844 6.8e-19 99.0 131 41.2
Os10g0389100 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 4.1e-16 89.7 206 30.1
TPR.G22736 Trifolium pratense HOM05D004996 ORTHO05D005844 2.7e-15 87.0 97 45.4
Atru.chr3.333 Acer truncatum HOM05D004996 ORTHO05D005844 2.5e-13 80.5 88 45.5
CBR_g39812 Chara braunii HOM05D004996 ORTHO05D005844 4.2e-13 79.7 263 27.0
CBR_g39811 Chara braunii HOM05D004996 ORTHO05D005844 1.4e-11 74.7 263 25.9
CBR_g39828 Chara braunii HOM05D001539 ORTHO05D008140 1.4e-11 74.7 237 25.7
TPR.G22585 Trifolium pratense HOM05D004996 ORTHO05D005844 6.3e-09 65.9 67 47.8


User provided reference genes

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