Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA238G3142 Erigeron canadensis HOM05D005240 ORTHO05D006471 4.1e-104 381.3 184 100.0
HanXRQChr07g0200441 Helianthus annuus HOM05D005240 ORTHO05D006471 8.0e-84 313.9 185 83.2
Lsat_1_v5_gn_2_115080 Lactuca sativa HOM05D005240 ORTHO05D006471 5.8e-82 307.8 185 80.5
ECA238G0657 Erigeron canadensis HOM05D005240 ORTHO05D006471 8.9e-75 283.9 180 78.3
Gorai.012G093700 Gossypium raimondii HOM05D005240 ORTHO05D006471 5.8e-74 281.2 185 73.5
Gohir.D04G083000 Gossypium hirsutum HOM05D005240 ORTHO05D006471 2.2e-73 279.3 185 73.0
arahy.Tifrunner.gnm1.ann1.CT8M8A Arachis hypogaea HOM05D005240 ORTHO05D006471 8.3e-73 277.3 185 71.4
Gohir.A05G344500 Gossypium hirsutum HOM05D005240 ORTHO05D006471 8.3e-73 277.3 185 72.4
Lj5g0013716 Lotus japonicus HOM05D005240 ORTHO05D006471 1.1e-72 276.9 185 70.8
Nitab4.5_0001721g0020 Nicotiana tabacum HOM05D005240 ORTHO05D006471 1.1e-72 276.9 184 72.8
Cc09_g02730 Coffea canephora HOM05D005240 ORTHO05D006471 1.4e-72 276.6 184 73.4
Lalb_Chr06g0162141 Lupinus albus HOM05D005240 ORTHO05D006471 1.4e-72 276.6 185 71.4
CSS0026127 Camellia sinensis var. sinensis HOM05D005240 ORTHO05D006471 1.9e-72 276.2 175 75.4
RcHm_v2.0_Chr1g0364101 Rosa chinensis HOM05D005240 ORTHO05D006471 7.1e-72 274.2 181 73.5
Medtr1g095890 Medicago truncatula HOM05D005240 ORTHO05D006471 1.2e-71 273.5 188 72.9
Nitab4.5_0000061g0160 Nicotiana tabacum HOM05D005240 ORTHO05D006471 2.1e-71 272.7 182 72.5
Phvul.007G091800 Phaseolus vulgaris HOM05D005240 ORTHO05D006471 2.1e-71 272.7 182 70.3
Thecc.10G068200 Theobroma cacao HOM05D005240 ORTHO05D006471 2.1e-71 272.7 185 71.4
arahy.Tifrunner.gnm1.ann1.9PA5H9 Arachis hypogaea HOM05D005240 ORTHO05D006471 2.7e-71 272.3 181 70.7
Sopen10g001790 Solanum pennellii HOM05D005240 ORTHO05D006471 3.5e-71 271.9 183 72.7
Glyma.10G213900 Glycine max HOM05D005240 ORTHO05D006471 6.0e-71 271.2 182 70.9
Solyc10g005830.3 Solanum lycopersicum HOM05D005240 ORTHO05D006471 7.8e-71 270.8 183 72.1
FvH4_7g20150 Fragaria vesca HOM05D005240 ORTHO05D006471 1.0e-70 270.4 186 71.5
FAN06G0525 Fragaria x ananassa HOM05D005240 ORTHO05D006471 1.0e-70 270.4 186 71.5
Peaxi162Scf00373g00310 Petunia axillaris HOM05D005240 ORTHO05D006471 1.0e-70 270.4 182 70.9
Psat6g186000 Pisum sativum HOM05D005240 ORTHO05D006471 1.7e-70 269.6 187 71.1
Nn2g13000 Nelumbo nucifera HOM05D005240 ORTHO05D006471 5.1e-70 268.1 184 70.1
TWI38G0703 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 5.1e-70 268.1 186 69.4
arahy.Tifrunner.gnm1.ann1.D7L05R Arachis hypogaea HOM05D005240 ORTHO05D006471 8.6e-70 267.3 185 69.7
Sc14g0005480 Simmondsia chinensis HOM05D005240 ORTHO05D006471 1.5e-69 266.5 181 71.8
PGR044G1235 Punica granatum HOM05D005240 ORTHO05D006471 1.9e-69 266.2 185 71.9
Hma1.2p1_0453F.1_g156180 Hydrangea macrophylla HOM05D005240 ORTHO05D006471 2.5e-69 265.8 184 69.0
Prupe.2G218200 Prunus persica HOM05D005240 ORTHO05D006471 2.5e-69 265.8 184 71.2
QL08p056831 Quercus lobata HOM05D005240 ORTHO05D006471 2.5e-69 265.8 183 68.3
Actinidia38251 Actinidia chinensis HOM05D005240 ORTHO05D006471 3.3e-69 265.4 185 70.3
VMungo0720G3076 Vigna mungo HOM05D005240 ORTHO05D006471 3.3e-69 265.4 182 68.1
Duzib114G0729 Durio zibethinus HOM05D005240 ORTHO05D006471 5.6e-69 264.6 185 69.7
GSVIVG01016337001 Vitis vinifera HOM05D005240 ORTHO05D006471 5.6e-69 264.6 184 69.0
Hund19334 Selenicereus undatus HOM05D005240 ORTHO05D006471 7.3e-69 264.2 187 67.4
FAN10G3611 Fragaria x ananassa HOM05D005240 ORTHO05D006471 9.6e-69 263.8 186 69.9
MD07G1179100 Malus domestica HOM05D005240 ORTHO05D006471 1.2e-68 263.5 181 72.9
Glyma.10G214000 Glycine max HOM05D005240 ORTHO05D006471 1.6e-68 263.1 182 71.4
Manes.10G042700 Manihot esculenta HOM05D005240 ORTHO05D006471 2.8e-68 262.3 182 68.1
Ca_10594_v3 Cicer arietinum L. HOM05D005240 ORTHO05D006471 3.6e-68 261.9 186 71.0
FAN03G2612 Fragaria x ananassa HOM05D005240 ORTHO05D006471 3.6e-68 261.9 186 69.9
TWI15G1019 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 3.6e-68 261.9 181 69.1
Eucgr.J01124 Eucalyptus grandis HOM05D005240 ORTHO05D006471 4.7e-68 261.5 181 71.3
Atru.chr12.634 Acer truncatum HOM05D005240 ORTHO05D006471 1.4e-67 260.0 187 69.5
Thecc.10G068300 Theobroma cacao HOM05D005240 ORTHO05D006471 4.0e-67 258.5 185 67.6
PSO210G2142 Papaver somniferum HOM05D005240 ORTHO05D006471 8.9e-67 257.3 180 67.8
MSTRG.355 Avicennia marina HOM05D005240 ORTHO05D006471 1.2e-66 256.9 184 67.9
AL4G31940 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 1.5e-66 256.5 181 64.6
DCAR_015276 Daucus carota HOM05D005240 ORTHO05D006471 2.0e-66 256.1 181 68.5
Migut.F01799 Erythranthe guttata HOM05D005240 ORTHO05D006471 2.0e-66 256.1 184 66.8
Ah.16g108220 Amaranthus hybridus HOM05D005240 ORTHO05D006471 2.6e-66 255.8 194 64.9
TAR636G2864 Trochodendron aralioides HOM05D005240 ORTHO05D006471 5.8e-66 254.6 184 67.4
Potri.010G217500 Populus trichocarpa HOM05D005240 ORTHO05D006471 7.6e-66 254.2 184 66.8
Sabra10G0168200 Salix brachista HOM05D005240 ORTHO05D006471 2.2e-65 252.7 184 67.9
CiPaw.01G276500 Carya illinoinensis HOM05D005240 ORTHO05D006471 3.8e-65 251.9 185 64.3
Zm00001eb148920 Zea mays HOM05D005240 ORTHO05D006471 3.8e-65 251.9 186 64.0
THA.LOC104803452 Tarenaya hassleriana HOM05D005240 ORTHO05D006471 6.4e-65 251.1 182 64.8
Duzib128G0461 Durio zibethinus HOM05D005240 ORTHO05D006471 1.1e-64 250.4 185 66.5
Aqoxy4G03197 Aquilegia oxysepala HOM05D005240 ORTHO05D006471 4.2e-64 248.4 182 65.4
Carub.0004s1759 Capsella rubella HOM05D005240 ORTHO05D006471 4.2e-64 248.4 183 64.5
Thhalv10017274m.g Eutrema salsugineum HOM05D005240 ORTHO05D006471 1.2e-63 246.9 177 64.4
Ciclev10032844m.g Citrus clementina HOM05D005240 ORTHO05D006471 4.6e-63 245.0 165 70.9
MBI16_g46203_MAGBIO Magnolia biondii HOM05D005240 ORTHO05D006471 7.8e-63 244.2 203 61.1
SalBow3G0637 Salvia bowleyana HOM05D005240 ORTHO05D006471 2.3e-62 242.7 162 71.6
vmacro17506 Vaccinium macrocarpon HOM05D005240 ORTHO05D006471 2.3e-62 242.7 184 67.4
AUR62020787 Chenopodium quinoa HOM05D005240 ORTHO05D006471 3.0e-62 242.3 194 62.9
Medtr1g095900 Medicago truncatula HOM05D005240 ORTHO05D006471 6.6e-62 241.1 187 64.7
Sp4g18090 Schrenkiella parvula HOM05D005240 ORTHO05D006471 1.5e-61 240.0 185 64.3
ATR1159G086 Amborella trichopoda HOM05D005240 ORTHO05D006471 1.6e-60 236.5 194 57.7
AT2G35830 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 1.6e-60 236.5 181 60.2
BcaB06g28877 Brassica carinata HOM05D005240 ORTHO05D006471 2.1e-60 236.1 181 61.3
BcaC02g07666 Brassica carinata HOM05D005240 ORTHO05D006471 2.1e-60 236.1 182 61.0
CANSAT56G3849 Cannabis sativa HOM05D005240 ORTHO05D006471 2.1e-60 236.1 186 61.3
A04p27280 Brassica napus HOM05D005240 ORTHO05D006471 2.8e-60 235.7 182 61.0
BraA04t18226Z Brassica rapa HOM05D005240 ORTHO05D006471 2.8e-60 235.7 182 61.0
SGA_v2.0_scaffold122G33245 Striga asiatica HOM05D005240 ORTHO05D006471 2.8e-60 235.7 166 70.5
DCAR_019135 Daucus carota HOM05D005240 ORTHO05D006471 6.2e-60 234.6 171 64.3
CDE07G1884 Ceratophyllum demersum HOM05D005240 ORTHO05D006471 8.1e-60 234.2 180 62.2
CANSAT56G2007 Cannabis sativa HOM05D005240 ORTHO05D006471 1.1e-59 233.8 186 60.8
HPP92_007585 Vanilla planifolia HOM05D005240 ORTHO05D006471 1.8e-59 233.0 180 60.6
COL.COLO4_23732 Corchorus olitorius HOM05D005240 ORTHO05D006471 2.4e-59 232.6 165 69.7
PSO170G1537 Papaver somniferum HOM05D005240 ORTHO05D006471 3.1e-59 232.3 178 62.9
Rhsim10G0162300 Rhododendron simsii HOM05D005240 ORTHO05D006471 3.1e-59 232.3 160 70.6
AT2G35810 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 4.0e-59 231.9 180 58.3
C04p64800 Brassica napus HOM05D005240 ORTHO05D006471 1.2e-58 230.3 182 58.8
BolC4t27957H Brassica oleracea HOM05D005240 ORTHO05D006471 1.2e-58 230.3 182 58.8
Os01g0833200 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 1.5e-58 229.9 183 61.7
AUR62043640 Chenopodium quinoa HOM05D005240 ORTHO05D006471 1.3e-57 226.9 176 64.2
CARHR130080 Cardamine hirsuta HOM05D005240 ORTHO05D006471 1.7e-57 226.5 177 59.9
AL4G31930 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 2.9e-57 225.7 177 59.3
AT2G35820 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 4.9e-57 224.9 180 57.8
CAN.G492.51 Capsicum annuum HOM05D005240 ORTHO05D006471 1.1e-56 223.8 166 63.9
PSO210G3376 Papaver somniferum HOM05D005240 ORTHO05D006471 1.3e-54 216.9 181 56.9
MELO3C023691.2 Cucumis melo HOM05D005240 ORTHO05D006471 3.0e-54 215.7 185 54.6
Pp3c27_2400 Physcomitrium patens HOM05D005240 ORTHO05D006471 3.9e-54 215.3 182 56.0
Sed0009768 Sechium edule HOM05D005240 ORTHO05D006471 1.1e-53 213.8 186 56.5
CsaV3_7G024930 Cucumis sativus L. HOM05D005240 ORTHO05D006471 1.5e-53 213.4 183 55.7
Mapoly0113s0026 Marchantia polymorpha HOM05D005240 ORTHO05D006471 9.6e-53 210.7 183 56.3
Sc09g0006770 Simmondsia chinensis HOM05D005240 ORTHO05D006471 9.6e-53 210.7 151 66.9
AagrBONN_evm.TU.Sc2ySwM_117.2297 Anthoceros agrestis HOM05D005240 ORTHO05D006471 2.1e-52 209.5 181 58.0
BcaB06g28875 Brassica carinata HOM05D005240 ORTHO05D006471 1.4e-51 206.8 162 60.5
Aa31LG7G14930 Aethionema arabicum HOM05D005240 ORTHO05D006471 3.4e-50 202.2 180 57.8
Dinv31345 Davidia involucrata HOM05D005240 ORTHO05D006471 3.4e-50 202.2 137 71.5
TPR.G10956 Trifolium pratense HOM05D005240 ORTHO05D006471 4.5e-50 201.8 132 74.2
Aa31LG7G14960 Aethionema arabicum HOM05D005240 ORTHO05D006471 2.9e-49 199.1 164 62.2
Sed0007370 Sechium edule HOM05D005240 ORTHO05D006471 8.4e-49 197.6 189 52.9
PSO210G2334 Papaver somniferum HOM05D005240 ORTHO05D006471 1.9e-48 196.4 161 58.4
Lj8C95T7 Lonicera japonica HOM05D005240 ORTHO05D006471 3.2e-48 195.7 134 70.1
SMO330G0010 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 3.2e-48 195.7 167 54.5
SMO147G0062 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 5.4e-48 194.9 169 53.8
SMO330G0030 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 3.5e-47 192.2 167 55.1
TPR.G15475 Trifolium pratense HOM05D005240 ORTHO05D006471 4.3e-45 185.3 134 63.4
SMO330G0038 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 5.6e-45 184.9 160 55.0
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 3.7e-44 182.2 193 49.7
Haze_16935 Corylus avellana HOM05D005240 ORTHO05D006471 6.2e-44 181.4 166 56.6
SMO147G0059 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 8.1e-44 181.0 161 52.8
SMO257G0002 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.4e-40 170.2 137 56.9
Oeu057235.1 Olea europaea HOM05D005240 ORTHO05D006471 3.5e-39 165.6 113 69.9
SMO330G0050 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 8.7e-38 161.0 126 59.5
Cre08.g378650 Chlamydomonas reinhardtii HOM05D005240 ORTHO05D006471 2.1e-36 156.4 177 46.3
arahy.Tifrunner.gnm1.ann1.ZWA97R Arachis hypogaea HOM05D005240 ORTHO05D006471 2.4e-35 152.9 124 62.1
MCO11G764 Micromonas commoda HOM05D005240 ORTHO05D006471 4.1e-35 152.1 177 45.2
SMO330G0006 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.6e-34 149.4 169 45.6
arahy.Tifrunner.gnm1.ann1.65Y6VJ Arachis hypogaea HOM05D005240 ORTHO05D006471 2.2e-33 146.4 185 45.4
ClCG09G009820 Citrullus lanatus HOM05D005240 ORTHO05D006471 2.9e-33 146.0 184 42.4
CARHR130090 Cardamine hirsuta HOM05D005240 ORTHO05D006471 1.8e-30 136.7 106 57.5
FAN01G3056 Fragaria x ananassa HOM05D005240 ORTHO05D006471 4.3e-29 132.1 88 71.6
unitig_0.g188 Utricularia gibba HOM05D005240 ORTHO05D006471 2.2e-28 129.8 92 64.1
PRCOL_00006731 Prasinoderma coloniale HOM05D005240 ORTHO05D006471 6.5e-25 118.2 189 36.5
SMO147G0342 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 4.1e-19 99.0 94 47.9
Nitab4.5_0011688g0030 Nicotiana tabacum HOM05D005240 ORTHO05D006471 3.4e-18 95.9 118 48.3
Lj8C95T8 Lonicera japonica HOM05D005240 ORTHO05D006471 7.0e-11 71.6 44 75.0
Cpa.g.sc53.24 Carica papaya HOM05D005240 ORTHO05D006471 1.6e-10 70.5 48 66.7
CAN.G1302.2 Capsicum annuum HOM05D005240 ORTHO05D115732 4.5e-10 68.9 107 37.4
Os01g0833150 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 1.7e-09 67.0 48 62.5
TPR.G38077 Trifolium pratense HOM05D005240 ORTHO05D006471 6.5e-09 65.1 49 65.3
TPR.G970 Trifolium pratense HOM05D005240 ORTHO05D006471 8.5e-09 64.7 44 65.9
SMO330G0037 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 4.2e-08 62.4 53 54.7
Lsat_1_v5_gn_9_94640 Lactuca sativa HOM05D000792 ORTHO05D004195 1.0e-06 57.8 26 96.2


User provided reference genes

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