Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA238G3082 Erigeron canadensis HOM05D004576 ORTHO05D005321 3.4e-220 768.1 405 100.0
HanXRQChr07g0206441 Helianthus annuus HOM05D004576 ORTHO05D005321 1.2e-180 636.7 408 84.1
Lsat_1_v5_gn_2_136141 Lactuca sativa HOM05D004576 ORTHO05D005321 1.6e-172 609.8 411 81.8
GSVIVG01038559001 Vitis vinifera HOM05D004576 ORTHO05D005321 5.7e-167 591.3 406 77.6
CAN.G140.19 Capsicum annuum HOM05D004576 ORTHO05D005321 8.0e-161 570.9 406 73.6
Rhsim09G0206100 Rhododendron simsii HOM05D004576 ORTHO05D005321 2.3e-160 569.3 406 73.4
Lsat_1_v5_gn_3_139541 Lactuca sativa HOM05D004576 ORTHO05D005321 5.2e-160 568.2 416 76.0
Prupe.2G309200 Prunus persica HOM05D004576 ORTHO05D005321 4.4e-159 565.1 406 71.7
CSS0008628 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 9.8e-159 563.9 406 73.2
Dinv35342 Davidia involucrata HOM05D004576 ORTHO05D005321 9.8e-159 563.9 406 72.7
vmacro10126 Vaccinium macrocarpon HOM05D004576 ORTHO05D005321 1.7e-158 563.1 406 73.9
Solyc01g006110.3 Solanum lycopersicum HOM05D004576 ORTHO05D005321 3.7e-158 562.0 406 73.9
Sopen01g002110 Solanum pennellii HOM05D004576 ORTHO05D005321 3.7e-158 562.0 406 73.9
CAN.G575.13 Capsicum annuum HOM05D004576 ORTHO05D005321 6.4e-158 561.2 405 72.6
CiPaw.06G045600 Carya illinoinensis HOM05D004576 ORTHO05D005321 1.1e-157 560.5 406 73.6
DCAR_020325 Daucus carota HOM05D004576 ORTHO05D005321 1.9e-157 559.7 406 75.4
Nn1g00276 Nelumbo nucifera HOM05D004576 ORTHO05D005321 3.2e-157 558.9 406 71.2
Gohir.A05G415000 Gossypium hirsutum HOM05D004576 ORTHO05D005321 4.1e-157 558.5 406 71.2
Gohir.D04G001200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 7.0e-157 557.8 406 71.2
Gorai.012G002200 Gossypium raimondii HOM05D004576 ORTHO05D005321 7.0e-157 557.8 406 71.2
PGSC0003DMG400032187 Solanum tuberosum HOM05D004576 ORTHO05D005321 9.2e-157 557.4 406 73.2
Nitab4.5_0003555g0040 Nicotiana tabacum HOM05D004576 ORTHO05D005321 1.2e-156 557.0 406 71.2
Ca_16714_v3 Cicer arietinum L. HOM05D004576 ORTHO05D005321 1.6e-156 556.6 407 70.8
Hund11655 Selenicereus undatus HOM05D004576 ORTHO05D005321 2.7e-156 555.8 408 70.3
RcHm_v2.0_Chr1g0380451 Rosa chinensis HOM05D004576 ORTHO05D005321 7.8e-156 554.3 408 70.3
Hma1.2p1_0404F.1_g145290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 1.0e-155 553.9 410 71.7
Hma1.2p1_1587F.1_g292290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 1.3e-155 553.5 410 71.7
Glyma.04G234900 Glycine max HOM05D004576 ORTHO05D005321 2.3e-155 552.7 406 71.2
Cpa.g.sc3.95 Carica papaya HOM05D004576 ORTHO05D005321 5.0e-155 551.6 406 71.7
Medtr3g091640 Medicago truncatula HOM05D004576 ORTHO05D005321 6.6e-155 551.2 408 71.8
MD07G1287100 Malus domestica HOM05D004576 ORTHO05D005321 1.1e-154 550.4 406 70.2
MD07G1287400 Malus domestica HOM05D004576 ORTHO05D005321 1.1e-154 550.4 406 70.2
COL.COLO4_16771 Corchorus olitorius HOM05D004576 ORTHO05D005321 1.5e-154 550.1 421 68.6
Migut.F00204 Erythranthe guttata HOM05D004576 ORTHO05D005321 1.9e-154 549.7 406 72.7
Hma1.2p1_1507F.1_g287630 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 1.9e-154 549.7 406 72.7
Lalb_Chr11g0066931 Lupinus albus HOM05D004576 ORTHO05D005321 2.5e-154 549.3 406 70.2
FAN06G0548 Fragaria x ananassa HOM05D004576 ORTHO05D005321 4.3e-154 548.5 408 69.6
Phvul.009G051900 Phaseolus vulgaris HOM05D004576 ORTHO05D005321 4.3e-154 548.5 406 71.2
FvH4_7g31380 Fragaria vesca HOM05D004576 ORTHO05D005321 5.6e-154 548.1 408 69.4
arahy.Tifrunner.gnm1.ann1.EHU7FT Arachis hypogaea HOM05D004576 ORTHO05D005321 7.3e-154 547.7 406 69.5
arahy.Tifrunner.gnm1.ann1.S03LBS Arachis hypogaea HOM05D004576 ORTHO05D005321 7.3e-154 547.7 406 69.5
FAN06G1560 Fragaria x ananassa HOM05D004576 ORTHO05D005321 7.3e-154 547.7 407 69.8
VMungo1309G0981 Vigna mungo HOM05D005525 ORTHO05D005321 1.6e-153 546.6 406 71.4
Eucgr.A01454 Eucalyptus grandis HOM05D004576 ORTHO05D005321 2.8e-153 545.8 406 71.2
Psat5g076560 Pisum sativum HOM05D004576 ORTHO05D005321 2.8e-153 545.8 407 70.3
SGA_v2.0_scaffold192G40533 Striga asiatica HOM05D004576 ORTHO05D005321 3.6e-153 545.4 406 71.4
Cc02_g01450 Coffea canephora HOM05D004576 ORTHO05D005321 6.2e-153 544.7 406 70.2
TAR633G0881 Trochodendron aralioides HOM05D004576 ORTHO05D005321 8.1e-153 544.3 405 69.6
Duzib068G0175 Durio zibethinus HOM05D004576 ORTHO05D005321 1.1e-152 543.9 406 70.2
Actinidia06144 Actinidia chinensis HOM05D004576 ORTHO05D005321 1.8e-152 543.1 406 70.2
MD01G1217800 Malus domestica HOM05D004576 ORTHO05D005321 1.8e-152 543.1 406 69.5
FAN03G3343 Fragaria x ananassa HOM05D004576 ORTHO05D005321 2.3e-152 542.7 408 69.4
CANSAT21G1766 Cannabis sativa HOM05D004576 ORTHO05D005321 3.1e-152 542.3 406 69.5
Ah.07g205540 Amaranthus hybridus HOM05D004576 ORTHO05D005321 6.8e-152 541.2 406 68.7
FAN01G2495 Fragaria x ananassa HOM05D004576 ORTHO05D005321 1.2e-151 540.4 408 68.6
Potri.012G016500 Populus trichocarpa HOM05D004576 ORTHO05D005321 1.5e-151 540.0 405 70.6
EL10Ac3g05272 Beta vulgaris HOM05D004576 ORTHO05D005321 2.0e-151 539.7 406 69.0
PGR042G3016 Punica granatum HOM05D004576 ORTHO05D005321 2.0e-151 539.7 406 68.2
Sc25g0000910 Simmondsia chinensis HOM05D004576 ORTHO05D005321 5.8e-151 538.1 405 69.6
TAR629G2734 Trochodendron aralioides HOM05D004576 ORTHO05D005321 2.2e-150 536.2 409 69.4
Manes.10G051900 Manihot esculenta HOM05D004576 ORTHO05D005321 2.9e-150 535.8 406 68.7
AUR62019411 Chenopodium quinoa HOM05D004576 ORTHO05D005321 6.4e-150 534.6 406 68.2
Peaxi162Scf00441g00115 Petunia axillaris HOM05D004576 ORTHO05D005321 1.1e-149 533.9 404 70.8
Thecc.03G200200 Theobroma cacao HOM05D004576 ORTHO05D005321 1.1e-149 533.9 406 69.0
TPR.G18754 Trifolium pratense HOM05D004576 ORTHO05D005321 1.4e-149 533.5 396 69.2
Aqoxy7G00528 Aquilegia oxysepala HOM05D004576 ORTHO05D005321 1.9e-149 533.1 406 69.0
TWI39G0751 Tripterygium wilfordii HOM05D004576 ORTHO05D005321 1.9e-149 533.1 406 69.7
Lj4g0015379 Lotus japonicus HOM05D004576 ORTHO05D005321 4.1e-149 531.9 407 69.0
Cfa016237 Carpinus fangiana HOM05D004576 ORTHO05D005321 9.2e-149 530.8 406 67.7
Atru.chr12.2224 Acer truncatum HOM05D004576 ORTHO05D005321 4.6e-148 528.5 407 68.8
THA.LOC104799972 Tarenaya hassleriana HOM05D004576 ORTHO05D005321 4.6e-148 528.5 406 70.2
Manes.07G095000 Manihot esculenta HOM05D004576 ORTHO05D005321 1.0e-147 527.3 406 68.5
Haze_00204 Corylus avellana HOM05D004576 ORTHO05D005321 3.0e-147 525.8 406 68.0
Thhalv10013705m.g Eutrema salsugineum HOM05D004576 ORTHO05D005321 6.6e-147 524.6 406 69.2
Sed0009575 Sechium edule HOM05D004576 ORTHO05D005321 8.6e-147 524.2 405 67.7
SalBow4G0465 Salvia bowleyana HOM05D004576 ORTHO05D005321 1.1e-146 523.9 451 62.5
Aa31LG9G16760 Aethionema arabicum HOM05D004576 ORTHO05D005321 1.9e-146 523.1 406 68.2
MELO3C021489.2 Cucumis melo HOM05D004576 ORTHO05D005321 7.3e-146 521.2 405 67.2
Sp6g15160 Schrenkiella parvula HOM05D004576 ORTHO05D005321 9.5e-146 520.8 406 69.0
Potri.015G012200 Populus trichocarpa HOM05D004576 ORTHO05D005321 1.6e-145 520.0 406 68.7
PSO063G4456 Papaver somniferum HOM05D004576 ORTHO05D005321 1.1e-144 517.3 406 65.8
CSS0016084 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 1.4e-144 516.9 406 68.5
A10p10480 Brassica napus HOM05D004576 ORTHO05D005321 1.8e-144 516.5 406 68.0
ClCG09G018570 Citrullus lanatus HOM05D004576 ORTHO05D005321 1.8e-144 516.5 405 66.7
CARHR265990 Cardamine hirsuta HOM05D004576 ORTHO05D005321 3.1e-144 515.8 406 68.2
CsaV3_5G037660 Cucumis sativus L. HOM05D004576 ORTHO05D005321 4.0e-144 515.4 405 65.7
HPP92_010727 Vanilla planifolia HOM05D004576 ORTHO05D005321 4.0e-144 515.4 405 65.2
C09p42710 Brassica napus HOM05D004576 ORTHO05D005321 1.2e-143 513.8 406 67.7
BraA10t43131Z Brassica rapa HOM05D004576 ORTHO05D005321 1.5e-143 513.5 406 67.5
BolC9t57147H Brassica oleracea HOM05D004576 ORTHO05D005321 2.6e-143 512.7 406 67.7
Lj3C903T12 Lonicera japonica HOM05D004576 ORTHO05D005321 2.6e-143 512.7 407 69.5
QL09p008710 Quercus lobata HOM05D004576 ORTHO05D005321 4.4e-143 511.9 443 61.6
Nitab4.5_0005477g0060 Nicotiana tabacum HOM05D004576 ORTHO05D005321 7.6e-143 511.1 406 67.2
AL8G27600 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 9.9e-143 510.8 411 67.2
AL4G21090 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.3e-142 510.4 405 67.4
Sed0014456 Sechium edule HOM05D004576 ORTHO05D005321 1.3e-142 510.4 405 67.2
AT5G53000 Arabidopsis thaliana HOM05D004576 ORTHO05D005321 2.2e-142 509.6 406 67.7
MSTRG.27022 Avicennia marina HOM05D004576 ORTHO05D005321 1.1e-141 507.3 406 66.0
ATR0763G025 Amborella trichopoda HOM05D004576 ORTHO05D005321 1.4e-141 506.9 407 65.4
Oeu023658.2 Olea europaea HOM05D004576 ORTHO05D005321 1.4e-141 506.9 454 62.8
AUR62006083 Chenopodium quinoa HOM05D004576 ORTHO05D005321 2.4e-141 506.1 406 65.5
Ciclev10020388m.g Citrus clementina HOM05D004576 ORTHO05D005321 1.3e-139 500.4 411 64.7
Oeu041059.3 Olea europaea HOM05D004576 ORTHO05D005321 2.3e-139 499.6 444 63.7
Gohir.D12G250200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 5.1e-139 498.4 406 65.3
Gorai.008G268300 Gossypium raimondii HOM05D004576 ORTHO05D005321 5.1e-139 498.4 406 65.3
CDE02G4477 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 1.5e-138 496.9 406 63.3
Os12g0137500 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 1.5e-138 496.9 404 63.1
PSO170G5996 Papaver somniferum HOM05D004576 ORTHO05D005321 1.5e-138 496.9 406 63.8
unitig_748.g7294 Utricularia gibba HOM05D004576 ORTHO05D005321 4.3e-138 495.4 405 64.7
Carub.0008s1320 Capsella rubella HOM05D004576 ORTHO05D005321 1.1e-136 490.7 406 64.8
BcaC04g20518 Brassica carinata HOM05D004576 ORTHO05D005321 9.0e-136 487.6 406 65.5
Zm00001eb093250 Zea mays HOM05D004576 ORTHO05D005321 1.7e-134 483.4 404 60.6
MBI06_g10867_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 1.1e-133 480.7 432 58.1
Sabra15G0009800 Salix brachista HOM05D004576 ORTHO05D005321 9.3e-133 477.6 409 63.6
Gohir.A12G249400 Gossypium hirsutum HOM05D004576 ORTHO05D005321 5.3e-128 461.8 406 62.3
SEGI_39808 Sequoiadendron giganteum HOM05D004576 ORTHO05D005321 5.8e-127 458.4 405 58.3
Zm00001eb196410 Zea mays HOM05D004576 ORTHO05D005321 2.2e-126 456.4 409 58.7
Medtr1g050518 Medicago truncatula HOM05D004576 ORTHO05D005321 2.9e-126 456.1 334 71.9
PSO170G4165 Papaver somniferum HOM05D004576 ORTHO05D005321 1.2e-124 450.7 364 64.0
AL8G27540 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.7e-118 430.3 519 50.7
Glyma.06G129650 Glycine max HOM05D005525 ORTHO05D006341 1.6e-116 423.7 339 65.8
PGSC0003DMG400004286 Solanum tuberosum HOM05D004576 ORTHO05D005321 1.6e-113 413.7 297 73.4
Os11g0141000 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 7.6e-111 404.8 372 57.5
SHI02368 Sapria himalayana HOM05D004576 ORTHO05D005321 2.7e-108 396.4 439 54.4
Nitab4.5_0001620g0020 Nicotiana tabacum HOM05D004576 ORTHO05D005321 1.8e-107 393.7 446 53.4
SMO118G0543 Selaginella moellendorffii HOM05D004576 ORTHO05D005321 5.1e-107 392.1 408 52.9
BolC2t08029H Brassica oleracea HOM05D004576 ORTHO05D005321 4.1e-104 382.5 410 56.6
Pp3c27_2200 Physcomitrium patens HOM05D004576 ORTHO05D005321 2.3e-99 366.7 408 49.8
Pp3c27_2230 Physcomitrium patens HOM05D004576 ORTHO05D005321 2.3e-99 366.7 408 49.8
AagrBONN_evm.TU.Sc2ySwM_368.1428 Anthoceros agrestis HOM05D004576 ORTHO05D005321 6.1e-92 342.0 405 49.4
Mapoly0036s0077 Marchantia polymorpha HOM05D004576 ORTHO05D005321 4.2e-85 319.3 408 46.3
CiPaw.05G197500 Carya illinoinensis HOM05D004576 ORTHO05D005321 3.7e-81 306.2 413 49.9
BcaC03g14466 Brassica carinata HOM05D004576 ORTHO05D005321 2.3e-75 287.0 410 47.1
Dinv29270 Davidia involucrata HOM05D004576 ORTHO05D005321 2.4e-72 276.9 201 72.6
CBR_g54194 Chara braunii HOM05D004576 ORTHO05D005321 3.0e-67 260.0 434 42.6
C02p18880 Brassica napus HOM05D004576 ORTHO05D005321 1.6e-60 237.7 275 54.2
MBI07_g24780_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 4.4e-58 229.6 356 41.3
MBI07_g45568_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 9.8e-50 201.8 300 41.7
AL4G21010 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 4.9e-49 199.5 148 70.9
AL4G21000 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 2.5e-37 160.6 144 63.2
SGA_v2.0_scaffold44G16809 Striga asiatica HOM05D004576 ORTHO05D005321 8.9e-27 125.6 104 65.4
ATR0602G017 Amborella trichopoda HOM05D004576 ORTHO05D005321 4.4e-26 123.2 105 57.1
MCO15G223 Micromonas commoda HOM05D004576 ORTHO05D005321 1.7e-22 111.3 391 31.5
Lj1g0016726 Lotus japonicus HOM05D004576 ORTHO05D005321 8.7e-22 109.0 123 50.4
TAR636G2906 Trochodendron aralioides HOM05D004576 ORTHO05D005321 3.6e-20 103.6 84 67.9
Actinidia08655 Actinidia chinensis HOM05D004576 ORTHO05D005321 2.0e-18 97.8 96 54.2
AL4G21040 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.9e-16 91.3 78 64.1
PRCOL_00002440 Prasinoderma coloniale HOM05D004576 ORTHO05D005321 9.3e-16 89.0 438 26.0
CSS0039200 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 6.0e-15 86.3 72 63.9
CAN.G140.18 Capsicum annuum HOM05D004576 ORTHO05D005321 5.1e-14 83.2 71 57.7
Cfa025674 Carpinus fangiana HOM05D004576 ORTHO05D005321 1.1e-13 82.0 367 26.2
Cre09.g395621 Chlamydomonas reinhardtii HOM05D004576 ORTHO05D005321 4.3e-13 80.1 459 25.3
TPR.G19381 Trifolium pratense HOM05D000003 ORTHO05D000004 7.3e-13 79.3 89 51.7
BcaB05g21998 Brassica carinata HOM05D004576 ORTHO05D005321 2.1e-12 77.8 250 30.0
ATR0602G122 Amborella trichopoda HOM05D004576 ORTHO05D005321 1.4e-11 75.1 67 58.2
CDE08G1665 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 1.3e-09 68.6 55 63.6
C03p88580 Brassica napus HOM05D004576 ORTHO05D005321 2.1e-07 61.2 86 46.5


User provided reference genes

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