Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA238G3033 Erigeron canadensis HOM05D001743 ORTHO05D001685 1.3e-63 246.1 117 100.0
Lsat_1_v5_gn_2_76060 Lactuca sativa HOM05D001743 ORTHO05D001685 6.6e-15 84.3 56 66.1
HanXRQChr13g0414631 Helianthus annuus HOM05D001743 ORTHO05D001685 3.3e-14 82.0 56 62.5
Lsat_1_v5_gn_2_76100 Lactuca sativa HOM05D001743 ORTHO05D001685 3.6e-13 78.6 55 65.5
ECA238G1415 Erigeron canadensis HOM05D001743 ORTHO05D001685 1.8e-12 76.3 55 65.5
HanXRQChr14g0441831 Helianthus annuus HOM05D001743 ORTHO05D001685 6.8e-12 74.3 55 67.3
Nn6g32027 Nelumbo nucifera HOM05D001743 ORTHO05D001685 5.8e-11 71.2 61 55.7
Aqoxy6G02243 Aquilegia oxysepala HOM05D001743 ORTHO05D001685 3.7e-10 68.6 59 54.2
CAN.G1274.17 Capsicum annuum HOM05D001743 ORTHO05D001685 3.7e-10 68.6 61 54.1
Cfa006986 Carpinus fangiana HOM05D001743 ORTHO05D001685 8.3e-10 67.4 69 47.8
MD02G1129500 Malus domestica HOM05D001743 ORTHO05D001685 1.4e-09 66.6 57 54.4
PSO541G5483 Papaver somniferum HOM05D001743 ORTHO05D001685 1.4e-09 66.6 55 54.5
PSO675G4677 Papaver somniferum HOM05D001743 ORTHO05D001685 1.4e-09 66.6 55 52.7
Haze_03747 Corylus avellana HOM05D002398 ORTHO05D002817 2.4e-09 65.9 57 50.9
Thecc.01G016300 Theobroma cacao HOM05D001743 ORTHO05D001685 3.2e-09 65.5 59 54.2
DCAR_016597 Daucus carota HOM05D001743 ORTHO05D001685 4.1e-09 65.1 54 51.9
Ciclev10026691m.g Citrus clementina HOM05D001743 ORTHO05D001685 5.4e-09 64.7 62 50.0
Glyma.01G165300 Glycine max HOM05D001743 ORTHO05D001685 5.4e-09 64.7 56 55.4
MD15G1243800 Malus domestica HOM05D001743 ORTHO05D001685 5.4e-09 64.7 57 52.6
Nitab4.5_0000864g0240 Nicotiana tabacum HOM05D001743 ORTHO05D001685 7.1e-09 64.3 56 57.1
Atru.chr3.824 Acer truncatum HOM05D001743 ORTHO05D001685 9.2e-09 63.9 53 56.6
Lalb_Chr05g0212351 Lupinus albus HOM05D001743 ORTHO05D001685 9.2e-09 63.9 58 53.4
Medtr5g022390 Medicago truncatula HOM05D001743 ORTHO05D001685 1.6e-08 63.2 61 47.5
TPR.G31341 Trifolium pratense HOM05D001743 ORTHO05D001685 1.6e-08 63.2 59 50.8
Lj2g0010022 Lotus japonicus HOM05D001743 ORTHO05D001685 2.1e-08 62.8 57 47.4
Nn5g30732 Nelumbo nucifera HOM05D001743 ORTHO05D001685 2.1e-08 62.8 55 54.5
Phvul.002G107700 Phaseolus vulgaris HOM05D001743 ORTHO05D001685 2.1e-08 62.8 59 52.5
EL10Ac6g15488 Beta vulgaris HOM05D001743 ORTHO05D001685 4.6e-08 61.6 60 55.0
Dinv40103 Davidia involucrata HOM05D002398 ORTHO05D002817 4.6e-08 61.6 50 54.0
AT2G17850 Arabidopsis thaliana HOM05D001743 ORTHO05D001685 1.0e-07 60.5 58 51.7
Ca_25814_v3 Cicer arietinum L. HOM05D001743 ORTHO05D001685 1.0e-07 60.5 61 45.9
PGSC0003DMG400003573 Solanum tuberosum HOM05D001743 ORTHO05D001685 1.0e-07 60.5 61 49.2
Cc07_g10920 Coffea canephora HOM05D001743 ORTHO05D001685 1.3e-07 60.1 59 52.5
FAN28G1663 Fragaria x ananassa HOM05D002398 ORTHO05D002817 1.3e-07 60.1 61 45.9
GSVIVG01018759001 Vitis vinifera HOM05D001743 ORTHO05D001685 1.3e-07 60.1 55 50.9
Nitab4.5_0005102g0030 Nicotiana tabacum HOM05D001743 ORTHO05D001685 1.7e-07 59.7 65 46.2
VMungo0251G0423 Vigna mungo HOM05D001743 ORTHO05D001685 1.7e-07 59.7 55 52.7
Dinv40099 Davidia involucrata HOM05D001743 ORTHO05D001685 2.3e-07 59.3 50 52.0
Peaxi162Scf00328g00830 Petunia axillaris HOM05D001743 ORTHO05D001685 2.3e-07 59.3 55 52.7
Phvul.003G264200 Phaseolus vulgaris HOM05D001743 ORTHO05D001685 2.3e-07 59.3 55 52.7
Rhsim10G0210900 Rhododendron simsii HOM05D001743 ORTHO05D001685 2.3e-07 59.3 55 54.5
SalBow5G3834 Salvia bowleyana HOM05D001743 ORTHO05D001685 3.0e-07 58.9 64 48.4
GSVIVG01018758001 Vitis vinifera HOM05D001743 ORTHO05D001685 3.0e-07 58.9 55 49.1
AL3G50890 Arabidopsis lyrata HOM05D001743 ORTHO05D001685 3.9e-07 58.5 59 49.2
FvH4_1g11640 Fragaria vesca HOM05D001743 ORTHO05D001685 3.9e-07 58.5 61 44.3
Hund14053 Selenicereus undatus HOM05D001743 ORTHO05D001685 3.9e-07 58.5 53 52.8
TPR.G31338 Trifolium pratense HOM05D001743 ORTHO05D001685 3.9e-07 58.5 56 48.2
Duzib147G0432 Durio zibethinus HOM05D002398 ORTHO05D002817 5.1e-07 58.2 59 52.5
Glyma.11G077900 Glycine max HOM05D001743 ORTHO05D001685 5.1e-07 58.2 56 51.8
Glyma.16G126500 Glycine max HOM05D001743 ORTHO05D001685 5.1e-07 58.2 55 49.1
Sp3g31310 Schrenkiella parvula HOM05D001743 ORTHO05D001685 5.1e-07 58.2 58 53.4
Prupe.7G170100 Prunus persica HOM05D001743 ORTHO05D001685 6.6e-07 57.8 55 50.9
Lalb_Chr05g0229801 Lupinus albus HOM05D001743 ORTHO05D001685 1.1e-06 57.0 55 49.1
vmacro22142 Vaccinium macrocarpon HOM05D001743 ORTHO05D001685 1.1e-06 57.0 55 54.5
Lj4g0020054 Lotus japonicus HOM05D001743 ORTHO05D001685 1.5e-06 56.6 56 51.8
CSS0031503 Camellia sinensis var. sinensis HOM05D001743 ORTHO05D001685 1.9e-06 56.2 50 54.0
Ca_22388_v3 Cicer arietinum L. HOM05D001743 ORTHO05D001685 1.9e-06 56.2 54 50.0
ClCG01G020390 Citrullus lanatus HOM05D002828 ORTHO05D003457 1.9e-06 56.2 54 50.0
Gorai.007G049000 Gossypium raimondii HOM05D001743 ORTHO05D001685 1.9e-06 56.2 60 45.0
Solyc02g083730.4 Solanum lycopersicum HOM05D001743 ORTHO05D001685 1.9e-06 56.2 54 48.1
Sopen02g028510 Solanum pennellii HOM05D001743 ORTHO05D001685 1.9e-06 56.2 54 48.1
MSTRG.2721 Avicennia marina HOM05D001743 ORTHO05D001685 2.5e-06 55.8 51 49.0
MELO3C007917.2 Cucumis melo HOM05D001743 ORTHO05D001685 2.5e-06 55.8 54 50.0
Migut.L00693 Erythranthe guttata HOM05D001743 ORTHO05D001685 2.5e-06 55.8 56 48.2
MSTRG.15579 Avicennia marina HOM05D001743 ORTHO05D001685 3.3e-06 55.5 63 46.0
BcaB02g10046 Brassica carinata HOM05D001743 ORTHO05D001685 3.3e-06 55.5 57 49.1
Sed0000964 Sechium edule HOM05D001743 ORTHO05D001685 4.3e-06 55.1 53 45.3
AUR62029481 Chenopodium quinoa HOM05D001743 ORTHO05D001685 5.6e-06 54.7 54 48.1
CsaV3_6G047260 Cucumis sativus L. HOM05D001743 ORTHO05D001685 5.6e-06 54.7 54 48.1
Thhalv10005118m.g Eutrema salsugineum HOM05D001743 ORTHO05D001685 5.6e-06 54.7 57 49.1
FAN19G1969 Fragaria x ananassa HOM05D002398 ORTHO05D002817 5.6e-06 54.7 55 47.3
FAN23G2284 Fragaria x ananassa HOM05D002398 ORTHO05D002817 5.6e-06 54.7 55 47.3
FAN26G0734 Fragaria x ananassa HOM05D001743 ORTHO05D001685 5.6e-06 54.7 55 47.3
Glyma.02G047000 Glycine max HOM05D001743 ORTHO05D001685 5.6e-06 54.7 55 45.5
Gohir.D11G045700 Gossypium hirsutum HOM05D001743 ORTHO05D001685 5.6e-06 54.7 55 47.3
Lj4g0016005 Lotus japonicus HOM05D001743 ORTHO05D001685 5.6e-06 54.7 55 49.1
Psat4g100800 Pisum sativum HOM05D001743 ORTHO05D001685 5.6e-06 54.7 55 49.1
TWI73G0923 Tripterygium wilfordii HOM05D001743 ORTHO05D001685 5.6e-06 54.7 55 49.1
Gohir.A11G042200 Gossypium hirsutum HOM05D001743 ORTHO05D001685 7.3e-06 54.3 55 47.3
Nn5g30733 Nelumbo nucifera HOM05D001743 ORTHO05D001685 7.3e-06 54.3 63 44.4
Potri.005G111200 Populus trichocarpa HOM05D001743 ORTHO05D001685 7.3e-06 54.3 55 47.3
RcHm_v2.0_Chr2g0099231 Rosa chinensis HOM05D001743 ORTHO05D001685 7.3e-06 54.3 55 47.3
TPR.G8346 Trifolium pratense HOM05D001743 ORTHO05D001685 7.3e-06 54.3 51 45.1
Aqoxy1G03923 Aquilegia oxysepala HOM05D001743 ORTHO05D001685 9.5e-06 53.9 54 44.4
arahy.Tifrunner.gnm1.ann1.53RC8Z Arachis hypogaea HOM05D001743 ORTHO05D001685 9.5e-06 53.9 56 46.4
arahy.Tifrunner.gnm1.ann1.5BFV3F Arachis hypogaea HOM05D001743 ORTHO05D001685 9.5e-06 53.9 56 46.4
C07p25640 Brassica napus HOM05D001743 ORTHO05D001685 9.5e-06 53.9 50 52.0
CANSAT25G0115 Cannabis sativa HOM05D001743 ORTHO05D001685 9.5e-06 53.9 54 51.9
CiPaw.08G129300 Carya illinoinensis HOM05D001743 ORTHO05D001685 9.5e-06 53.9 55 47.3
AUR62003355 Chenopodium quinoa HOM05D001743 ORTHO05D001685 9.5e-06 53.9 54 48.1
SGA_v2.0_scaffold98G29359 Striga asiatica HOM05D001743 ORTHO05D001685 9.5e-06 53.9 56 48.2


User provided reference genes

Program Settings