Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA238G3003 Erigeron canadensis HOM05D005021 ORTHO05D006824 0.0e+00 2732.2 1381 100.0
HanXRQChr14g0447451 Helianthus annuus HOM05D005021 ORTHO05D006824 0.0e+00 2606.2 1382 94.7
Dinv25918 Davidia involucrata HOM05D005021 ORTHO05D006824 0.0e+00 2329.7 1389 84.7
CSS0004737 Camellia sinensis var. sinensis HOM05D005021 ORTHO05D006824 0.0e+00 2328.5 1390 84.9
Prupe.4G113100 Prunus persica HOM05D005021 ORTHO05D006824 0.0e+00 2271.9 1388 82.5
RcHm_v2.0_Chr5g0020301 Rosa chinensis HOM05D005021 ORTHO05D006824 0.0e+00 2265.3 1385 82.1
Sabra12G0094200 Salix brachista HOM05D005021 ORTHO05D006824 0.0e+00 2260.0 1390 82.4
Potri.012G124400 Populus trichocarpa HOM05D005021 ORTHO05D006824 0.0e+00 2256.1 1390 81.9
TAR626G1325 Trochodendron aralioides HOM05D005021 ORTHO05D006824 0.0e+00 2255.3 1386 82.0
GSVIVG01012103001 Vitis vinifera HOM05D005021 ORTHO05D006824 0.0e+00 2248.4 1394 81.8
COL.COLO4_17653 Corchorus olitorius HOM05D005021 ORTHO05D006824 0.0e+00 2245.3 1389 81.9
Solyc02g068720.3 Solanum lycopersicum HOM05D005021 ORTHO05D006824 0.0e+00 2242.2 1387 80.5
MD10G1231300 Malus domestica HOM05D005021 ORTHO05D006824 0.0e+00 2240.3 1386 81.7
Sopen02g017890 Solanum pennellii HOM05D005021 ORTHO05D006824 0.0e+00 2239.5 1387 80.4
DCAR_003775 Daucus carota HOM05D005021 ORTHO05D006824 0.0e+00 2238.8 1369 82.4
FvH4_3g12410 Fragaria vesca HOM05D005021 ORTHO05D006824 0.0e+00 2236.8 1386 81.5
Cc09_g06010 Coffea canephora HOM05D005021 ORTHO05D006824 0.0e+00 2236.1 1390 81.7
Migut.M01986 Erythranthe guttata HOM05D005021 ORTHO05D006824 0.0e+00 2233.4 1396 81.3
Thecc.02G008800 Theobroma cacao HOM05D005021 ORTHO05D006824 0.0e+00 2233.4 1390 81.9
MD05G1250500 Malus domestica HOM05D005021 ORTHO05D006824 0.0e+00 2230.3 1386 81.4
Atru.chr10.559 Acer truncatum HOM05D005021 ORTHO05D006824 0.0e+00 2229.1 1388 80.8
CiPaw.10G064100 Carya illinoinensis HOM05D005021 ORTHO05D006824 0.0e+00 2228.0 1387 80.3
Gohir.A01G141263 Gossypium hirsutum HOM05D005021 ORTHO05D006824 0.0e+00 2225.3 1392 81.2
Gorai.002G164100 Gossypium raimondii HOM05D005021 ORTHO05D006824 0.0e+00 2223.0 1392 81.3
Nitab4.5_0001288g0150 Nicotiana tabacum HOM05D005021 ORTHO05D006824 0.0e+00 2221.8 1386 80.3
QL11p016313 Quercus lobata HOM05D005021 ORTHO05D006824 0.0e+00 2221.4 1388 80.5
Cfa000703 Carpinus fangiana HOM05D005021 ORTHO05D006824 0.0e+00 2220.7 1388 80.2
Ciclev10014047m.g Citrus clementina HOM05D005021 ORTHO05D006824 0.0e+00 2220.7 1387 80.7
CAN.G149.8 Capsicum annuum HOM05D005021 ORTHO05D006824 0.0e+00 2213.3 1399 78.9
Nitab4.5_0007745g0040 Nicotiana tabacum HOM05D005021 ORTHO05D006824 0.0e+00 2211.0 1398 79.6
Gohir.D01G132500 Gossypium hirsutum HOM05D005021 ORTHO05D006824 0.0e+00 2210.3 1392 81.0
CANSAT35G0082 Cannabis sativa HOM05D005021 ORTHO05D006824 0.0e+00 2207.9 1389 80.2
Glyma.20G019300 Glycine max HOM05D005021 ORTHO05D006824 0.0e+00 2207.9 1390 79.3
Phvul.002G097500 Phaseolus vulgaris HOM05D005021 ORTHO05D006824 0.0e+00 2204.9 1391 79.4
Eucgr.D00052 Eucalyptus grandis HOM05D005021 ORTHO05D006824 0.0e+00 2203.7 1388 79.7
TWI38G0923 Tripterygium wilfordii HOM05D005021 ORTHO05D006824 0.0e+00 2202.6 1389 80.3
Oeu060353.1 Olea europaea HOM05D005021 ORTHO05D006824 0.0e+00 2202.2 1412 79.2
Nn7g38248 Nelumbo nucifera HOM05D005021 ORTHO05D006824 0.0e+00 2197.9 1423 79.1
TWI38G0776 Tripterygium wilfordii HOM05D005021 ORTHO05D006824 0.0e+00 2194.9 1386 80.2
ClCG01G009560 Citrullus lanatus HOM05D005021 ORTHO05D006824 0.0e+00 2190.2 1388 79.0
Psat7g129680 Pisum sativum HOM05D005021 ORTHO05D006824 0.0e+00 2189.8 1388 78.7
FAN21G1452 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 2189.1 1386 79.9
TPR.G38288 Trifolium pratense HOM05D005021 ORTHO05D006824 0.0e+00 2182.1 1388 78.6
Ca_18756_v3 Cicer arietinum L. HOM05D005021 ORTHO05D006824 0.0e+00 2181.8 1388 78.5
MELO3C021737.2 Cucumis melo HOM05D005021 ORTHO05D006824 0.0e+00 2180.6 1389 78.8
Lj4g0005220 Lotus japonicus HOM05D005021 ORTHO05D006824 0.0e+00 2179.8 1390 78.6
CsaV3_1G046230 Cucumis sativus L. HOM05D005021 ORTHO05D006824 0.0e+00 2177.9 1388 78.8
Sed0001856 Sechium edule HOM05D005021 ORTHO05D006824 0.0e+00 2173.7 1385 79.0
Medtr4g084140 Medicago truncatula HOM05D005021 ORTHO05D006824 0.0e+00 2171.7 1390 78.3
SalBow8G3018 Salvia bowleyana HOM05D005021 ORTHO05D006824 0.0e+00 2165.6 1399 78.7
Duzib248G0067 Durio zibethinus HOM05D005021 ORTHO05D006824 0.0e+00 2162.5 1347 81.2
Potri.015G124500 Populus trichocarpa HOM05D005021 ORTHO05D006824 0.0e+00 2159.8 1367 80.2
Lalb_Chr16g0385181 Lupinus albus HOM05D005021 ORTHO05D006824 0.0e+00 2158.3 1392 77.6
Aqoxy1G01424 Aquilegia oxysepala HOM05D005021 ORTHO05D006824 0.0e+00 2155.9 1384 78.5
Cpa.g.sc30.159 Carica papaya HOM05D005021 ORTHO05D006824 0.0e+00 2154.4 1400 78.1
Lj1A1146G59 Lonicera japonica HOM05D005021 ORTHO05D006824 0.0e+00 2150.9 1411 78.9
FAN25G1951 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 2147.9 1402 78.4
arahy.Tifrunner.gnm1.ann1.79RC6W Arachis hypogaea HOM05D005021 ORTHO05D006824 0.0e+00 2146.7 1482 74.0
PGR004G0612 Punica granatum HOM05D005021 ORTHO05D006824 0.0e+00 2145.5 1371 79.1
Haze_06074 Corylus avellana HOM05D005021 ORTHO05D006824 0.0e+00 2144.4 1432 76.5
PSO675G8902 Papaver somniferum HOM05D005021 ORTHO05D006824 0.0e+00 2132.8 1389 77.9
Aa31LG9G16120 Aethionema arabicum HOM05D005021 ORTHO05D006824 0.0e+00 2122.1 1416 75.4
THA.LOC104798554 Tarenaya hassleriana HOM05D005021 ORTHO05D006824 0.0e+00 2112.0 1397 76.4
Carub.0004s1679 Capsella rubella HOM05D005021 ORTHO05D006824 0.0e+00 2110.5 1407 75.8
AL4G31120 Arabidopsis lyrata HOM05D005021 ORTHO05D006824 0.0e+00 2107.0 1406 76.0
Thhalv10016146m.g Eutrema salsugineum HOM05D005021 ORTHO05D006824 0.0e+00 2102.0 1397 76.0
A05p10630 Brassica napus HOM05D005021 ORTHO05D006824 0.0e+00 2093.5 1385 76.1
BraA05t20004Z Brassica rapa HOM05D005021 ORTHO05D006824 0.0e+00 2092.8 1386 76.0
C04p13730 Brassica napus HOM05D005021 ORTHO05D006824 0.0e+00 2092.0 1386 75.8
BolC4t22962H Brassica oleracea HOM05D005021 ORTHO05D006824 0.0e+00 2090.1 1386 75.9
BcaB02g09478 Brassica carinata HOM05D005021 ORTHO05D006824 0.0e+00 2088.9 1386 76.0
Hma1.2p1_1005F.1_g246940 Hydrangea macrophylla HOM05D005021 ORTHO05D006824 0.0e+00 2086.2 1223 84.5
arahy.Tifrunner.gnm1.ann1.59QZXR Arachis hypogaea HOM05D005021 ORTHO05D006824 0.0e+00 2085.1 1485 72.3
vmacro03526 Vaccinium macrocarpon HOM05D005021 ORTHO05D006824 0.0e+00 2069.7 1696 66.0
Manes.16G055900 Manihot esculenta HOM05D005021 ORTHO05D006824 0.0e+00 2067.4 1254 82.5
AT2G35110 Arabidopsis thaliana HOM05D005021 ORTHO05D006824 0.0e+00 2065.4 1362 76.3
BcaB02g09480 Brassica carinata HOM05D005021 ORTHO05D006824 0.0e+00 2065.0 1396 75.2
RhsimUnG0043400 Rhododendron simsii HOM05D005021 ORTHO05D006824 0.0e+00 2019.2 1300 78.6
AUR62037395 Chenopodium quinoa HOM05D005021 ORTHO05D006824 0.0e+00 1988.0 1350 74.1
AUR62041742 Chenopodium quinoa HOM05D005021 ORTHO05D006824 0.0e+00 1984.9 1334 74.6
Hund09140 Selenicereus undatus HOM05D005021 ORTHO05D006824 0.0e+00 1969.1 1349 73.9
SGA_v2.0_scaffold175G39355 Striga asiatica HOM05D005021 ORTHO05D006824 0.0e+00 1931.4 1377 73.1
Os08g0544500 Oryza sativa ssp. japonica HOM05D005021 ORTHO05D006824 0.0e+00 1924.4 1371 70.3
EL10Ac9g20953 Beta vulgaris HOM05D005021 ORTHO05D006824 0.0e+00 1923.3 1396 71.2
unitig_748.g8077 Utricularia gibba HOM05D005021 ORTHO05D006824 0.0e+00 1921.7 1333 73.2
Sc17g0003700 Simmondsia chinensis HOM05D005021 ORTHO05D006824 0.0e+00 1886.3 1194 78.6
Zm00001eb405230 Zea mays HOM05D005021 ORTHO05D006824 0.0e+00 1879.8 1372 69.2
ATR0752G031 Amborella trichopoda HOM05D005021 ORTHO05D006824 0.0e+00 1835.1 1371 67.3
Ah.01g015830 Amaranthus hybridus HOM05D005021 ORTHO05D006824 0.0e+00 1763.0 1530 62.0
Lsat_1_v5_gn_2_63641 Lactuca sativa HOM05D005021 ORTHO05D006824 0.0e+00 1583.9 974 84.4
Peaxi162Scf00149g00312 Petunia axillaris HOM05D005021 ORTHO05D006824 0.0e+00 1485.7 928 79.5
CDE05G3601 Ceratophyllum demersum HOM05D005021 ORTHO05D006824 0.0e+00 1476.1 1150 65.0
Mapoly0087s0075 Marchantia polymorpha HOM05D005021 ORTHO05D006824 0.0e+00 1418.7 1380 53.4
Sp4g17340 Schrenkiella parvula HOM05D005021 ORTHO05D006824 0.0e+00 1366.7 812 83.7
Pp3c11_1080 Physcomitrium patens HOM05D005021 ORTHO05D006824 0.0e+00 1340.1 1337 51.5
Pp3c1_6150 Physcomitrium patens HOM05D005021 ORTHO05D006824 0.0e+00 1334.3 1360 50.4
SMO367G0195 Selaginella moellendorffii HOM05D005021 ORTHO05D006824 0.0e+00 1320.8 1321 51.1
FAN16G3288 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 1201.8 715 84.8
HPP92_017169 Vanilla planifolia HOM05D005021 ORTHO05D006824 0.0e+00 1194.1 878 67.4
CARHR129260 Cardamine hirsuta HOM05D005021 ORTHO05D006824 0.0e+00 1157.1 819 71.3
VMungo0251G0795 Vigna mungo HOM05D005021 ORTHO05D006824 0.0e+00 1148.7 761 76.1
Actinidia33677 Actinidia chinensis HOM05D005021 ORTHO05D006824 0.0e+00 1146.3 792 74.7
AagrBONN_evm.TU.Sc2ySwM_344.1422 Anthoceros agrestis HOM05D005021 ORTHO05D006824 2.2e-282 976.5 815 58.4
VMungo0251G3115 Vigna mungo HOM05D005021 ORTHO05D006824 1.2e-280 970.7 588 81.5
Potri.015G123900 Populus trichocarpa HOM05D005021 ORTHO05D006824 1.7e-242 844.0 598 73.2
Oeu060352.1 Olea europaea HOM05D005021 ORTHO05D006824 1.7e-210 737.6 486 78.2
QL11p016288 Quercus lobata HOM05D005021 ORTHO05D006824 2.4e-196 690.6 504 69.2
SHI31491 Sapria himalayana HOM05D005021 ORTHO05D006824 1.4e-193 681.4 519 66.3
CBR_g30692 Chara braunii HOM05D005021 ORTHO05D006824 7.9e-184 649.0 1479 30.2
BcaNung06473 Brassica carinata HOM05D005021 ORTHO05D006824 4.2e-153 547.0 537 57.2
HPP92_017178 Vanilla planifolia HOM05D005021 ORTHO05D006824 6.3e-149 533.1 364 72.0
SEGI_39898 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 8.3e-141 506.1 527 52.4
Medtr4g081610 Medicago truncatula HOM05D005021 ORTHO05D006824 1.0e-114 419.5 535 48.4
Psat0s5010g0080 Pisum sativum HOM05D005021 ORTHO05D006824 3.5e-99 367.9 226 77.0
Psat0s2371g0040 Pisum sativum HOM05D000434 ORTHO05D006824 2.8e-88 331.6 221 71.5
SEGI_00319 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 3.1e-87 328.2 203 78.8
Medtr4g081600 Medicago truncatula HOM05D005021 ORTHO05D006824 9.0e-79 300.1 415 45.5
HPP92_017177 Vanilla planifolia HOM05D005021 ORTHO05D006824 5.9e-62 244.2 147 82.3
Sp2g07020 Schrenkiella parvula HOM05D005021 ORTHO05D006824 9.4e-60 236.9 299 45.8
Psat0s5010g0040 Pisum sativum HOM05D005021 ORTHO05D004273 6.1e-51 207.6 139 74.1
SEGI_02164 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 6.5e-45 187.6 128 66.4
Oeu003620.1 Olea europaea HOM05D005021 ORTHO05D006824 5.4e-39 167.9 116 75.9
Actinidia33676 Actinidia chinensis HOM05D005021 ORTHO05D006824 2.7e-35 155.6 94 84.0
Potri.015G124200 Populus trichocarpa HOM05D005021 ORTHO05D006824 1.2e-33 150.2 133 63.2
SEGI_41047 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 4.4e-33 148.3 146 49.3
BcaB07g31175 Brassica carinata HOM05D005021 ORTHO05D006824 1.8e-31 142.9 89 73.0
SGA_v2.0_scaffold88G27325 Striga asiatica HOM05D005021 ORTHO05D006824 7.0e-31 141.0 101 68.3
QL05p044008 Quercus lobata HOM05D005021 ORTHO05D006824 5.9e-30 137.9 83 81.9
GSVIVG01004787001 Vitis vinifera HOM05D000908 ORTHO05D000789 5.6e-28 131.3 87 70.1
Lsat_1_v5_gn_6_73941 Lactuca sativa HOM05D005021 ORTHO05D020826 7.3e-28 131.0 153 56.2
Lsat_1_v5_gn_3_96441 Lactuca sativa HOM05D005021 ORTHO05D020826 1.2e-27 130.2 239 40.2
SHI31497 Sapria himalayana HOM05D005021 ORTHO05D006824 6.1e-27 127.9 112 56.2
MBI13_g07384_MAGBIO Magnolia biondii HOM05D005021 ORTHO05D018021 1.8e-26 126.3 101 66.3
Oeu048766.1 Olea europaea HOM05D001727 ORTHO05D001758 6.8e-26 124.4 86 70.9
Zm00001eb290420 Zea mays HOM05D005021 ORTHO05D006824 1.7e-24 119.8 97 56.7
SHI31495 Sapria himalayana HOM05D005021 ORTHO05D006824 5.9e-22 111.3 121 49.6
HPP92_017168 Vanilla planifolia HOM05D005021 ORTHO05D006824 1.7e-21 109.8 68 82.4
Potri.015G123001 Populus trichocarpa HOM05D005021 ORTHO05D006824 3.4e-17 95.5 53 88.7
SGA_v2.0_scaffold181G39736 Striga asiatica HOM05D003210 ORTHO05D000001 4.4e-17 95.1 177 39.0
SEGI_05203 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 1.1e-15 90.5 50 92.0
Zm00001eb404970 Zea mays HOM05D005021 ORTHO05D006824 1.1e-15 90.5 105 49.5
Psat5g003360 Pisum sativum HOM05D005021 ORTHO05D006824 1.2e-14 87.0 87 47.1
Oeu008861.1 Olea europaea HOM05D005021 ORTHO05D006824 6.6e-13 81.3 55 81.8
Lsat_1_v5_gn_8_50200 Lactuca sativa HOM05D003846 ORTHO05D004726 8.6e-13 80.9 45 91.1
Lsat_1_v5_gn_2_58240 Lactuca sativa HOM05D003297 ORTHO05D020826 5.6e-12 78.2 42 95.2
Lsat_1_v5_gn_4_123441 Lactuca sativa HOM05D003846 ORTHO05D004726 5.8e-09 68.2 44 79.5
Lsat_1_v5_gn_5_125381 Lactuca sativa HOM05D003846 ORTHO05D020826 5.8e-09 68.2 44 79.5
Lsat_1_v5_gn_5_18841 Lactuca sativa HOM05D003846 ORTHO05D020826 5.8e-09 68.2 44 79.5
Lsat_1_v5_gn_5_43841 Lactuca sativa HOM05D003846 ORTHO05D020826 5.8e-09 68.2 44 79.5
Lsat_1_v5_gn_7_114520 Lactuca sativa HOM05D003846 ORTHO05D004726 5.8e-09 68.2 44 79.5
Psat0s659g0040 Pisum sativum HOM05D005021 ORTHO05D023083 4.9e-08 65.1 90 41.1
Lsat_1_v5_gn_4_70420 Lactuca sativa HOM05D003297 ORTHO05D020826 8.3e-08 64.3 43 76.7
Medtr3g014450 Medicago truncatula HOM05D005021 ORTHO05D006824 1.1e-07 63.9 54 57.4
Psat1g136920 Pisum sativum HOM05D005021 ORTHO05D023083 1.1e-07 63.9 56 53.6
Psat2g014320 Pisum sativum HOM05D005021 ORTHO05D023083 1.1e-07 63.9 56 53.6


User provided reference genes

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