Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA238G2978 Erigeron canadensis HOM05D004806 ORTHO05D005397 0.0e+00 1223.0 643 100.0
HanXRQChr14g0459971 Helianthus annuus HOM05D004806 ORTHO05D005397 2.2e-264 915.6 659 77.7
Lsat_1_v5_gn_2_121900 Lactuca sativa HOM05D004806 ORTHO05D005397 3.0e-229 798.9 675 71.6
HanXRQChr07g0200671 Helianthus annuus HOM05D004806 ORTHO05D005397 5.6e-199 698.4 662 63.3
Dinv20955 Davidia involucrata HOM05D004806 ORTHO05D005397 1.7e-171 607.1 671 56.2
Dinv20988 Davidia involucrata HOM05D004806 ORTHO05D005397 1.7e-171 607.1 671 56.2
Dinv34423 Davidia involucrata HOM05D004806 ORTHO05D005397 6.4e-171 605.1 685 54.6
Lj1C950G18 Lonicera japonica HOM05D004806 ORTHO05D005397 3.3e-167 592.8 708 53.2
CSS0019944 Camellia sinensis var. sinensis HOM05D004806 ORTHO05D005397 1.6e-166 590.5 651 55.5
Actinidia33944 Actinidia chinensis HOM05D004806 ORTHO05D005397 3.0e-160 569.7 655 55.1
DCAR_027553 Daucus carota HOM05D004806 ORTHO05D005397 2.1e-158 563.5 658 52.9
Duzib106G0751 Durio zibethinus HOM05D004806 ORTHO05D005397 4.9e-155 552.4 667 50.4
Thecc.10G026200 Theobroma cacao HOM05D004806 ORTHO05D005397 3.5e-153 546.2 667 51.6
RcHm_v2.0_Chr1g0369401 Rosa chinensis HOM05D004806 ORTHO05D005397 1.0e-152 544.7 670 51.5
FAN10G3438 Fragaria x ananassa HOM05D004806 ORTHO05D005397 3.9e-152 542.7 629 53.3
Cc02_g06920 Coffea canephora HOM05D004806 ORTHO05D005397 5.1e-152 542.3 660 50.5
Nitab4.5_0000737g0020 Nicotiana tabacum HOM05D004806 ORTHO05D005397 6.7e-152 542.0 649 50.7
Prupe.2G246100 Prunus persica HOM05D004806 ORTHO05D005397 8.7e-152 541.6 674 51.5
Peaxi162Scf00401g00118 Petunia axillaris HOM05D004806 ORTHO05D005397 1.1e-151 541.2 657 50.5
FvH4_7g24020 Fragaria vesca HOM05D004806 ORTHO05D005397 1.5e-151 540.8 629 53.1
Duzib114G0963 Durio zibethinus HOM05D004806 ORTHO05D005397 1.9e-151 540.4 672 50.9
FAN06G0754 Fragaria x ananassa HOM05D004806 ORTHO05D005397 2.5e-151 540.0 629 53.1
Gorai.010G199100 Gossypium raimondii HOM05D004806 ORTHO05D005397 3.3e-151 539.7 683 49.8
FAN03G1683 Fragaria x ananassa HOM05D004806 ORTHO05D005397 5.7e-151 538.9 629 52.8
Atru.chr12.242 Acer truncatum HOM05D004806 ORTHO05D005397 2.2e-150 537.0 664 51.1
Nitab4.5_0003720g0010 Nicotiana tabacum HOM05D004806 ORTHO05D005397 2.2e-150 537.0 671 49.5
Gohir.A06G164600 Gossypium hirsutum HOM05D004806 ORTHO05D005397 2.8e-150 536.6 639 51.5
Potri.010G192800 Populus trichocarpa HOM05D004806 ORTHO05D005397 2.8e-150 536.6 673 51.7
Gohir.D06G170100 Gossypium hirsutum HOM05D004806 ORTHO05D005397 6.3e-150 535.4 639 51.3
QL08p062653 Quercus lobata HOM05D004806 ORTHO05D005397 2.0e-148 530.4 708 49.2
TAR369G0441 Trochodendron aralioides HOM05D004806 ORTHO05D005397 5.9e-148 528.9 668 49.7
Manes.10G017800 Manihot esculenta HOM05D004806 ORTHO05D005397 1.3e-147 527.7 613 52.5
Gorai.011G280200 Gossypium raimondii HOM05D004806 ORTHO05D005397 2.9e-147 526.6 620 52.1
MD01G1147200 Malus domestica HOM05D004806 ORTHO05D005397 3.2e-146 523.1 628 52.4
Actinidia29677 Actinidia chinensis HOM05D004806 ORTHO05D005397 4.2e-146 522.7 638 51.6
Gohir.D10G243800 Gossypium hirsutum HOM05D004806 ORTHO05D005397 9.4e-146 521.5 619 51.7
CiPaw.01G295700 Carya illinoinensis HOM05D004806 ORTHO05D005397 1.2e-145 521.2 658 50.5
TWI53G0900 Tripterygium wilfordii HOM05D004806 ORTHO05D005397 4.6e-145 519.2 665 51.6
Gohir.A10G229600 Gossypium hirsutum HOM05D004806 ORTHO05D005397 6.1e-145 518.8 625 51.8
Potri.008G064500 Populus trichocarpa HOM05D004806 ORTHO05D005397 7.9e-145 518.5 669 50.7
Glyma.14G062000 Glycine max HOM05D004806 ORTHO05D005397 1.8e-144 517.3 670 48.8
Ciclev10030877m.g Citrus clementina HOM05D004806 ORTHO05D005397 2.3e-144 516.9 621 52.3
Medtr5g081880 Medicago truncatula HOM05D004806 ORTHO05D005397 3.0e-144 516.5 662 50.3
Nn2g11386 Nelumbo nucifera HOM05D004806 ORTHO05D005397 5.1e-144 515.8 662 49.1
vmacro06995 Vaccinium macrocarpon HOM05D004806 ORTHO05D005397 8.8e-144 515.0 634 50.6
Nn2g13619 Nelumbo nucifera HOM05D004806 ORTHO05D005397 4.3e-143 512.7 633 50.4
arahy.Tifrunner.gnm1.ann1.76KK00 Arachis hypogaea HOM05D004806 ORTHO05D005397 9.7e-143 511.5 615 51.2
Sabra08G0047400 Salix brachista HOM05D004806 ORTHO05D005397 9.7e-143 511.5 667 49.9
Ca_05931_v3 Cicer arietinum L. HOM05D004806 ORTHO05D005397 2.8e-142 510.0 662 49.7
TPR.G8038 Trifolium pratense HOM05D004806 ORTHO05D005397 2.8e-142 510.0 661 49.5
MBI14_g36885_MAGBIO Magnolia biondii HOM05D004806 ORTHO05D005397 4.8e-142 509.2 646 50.5
Psat2g035600 Pisum sativum HOM05D004806 ORTHO05D005397 4.8e-142 509.2 676 48.8
FAN01G2868 Fragaria x ananassa HOM05D004806 ORTHO05D005397 1.8e-141 507.3 680 48.7
SalBow6G1361 Salvia bowleyana HOM05D004806 ORTHO05D005397 4.1e-141 506.1 655 50.2
VMungo0647G1582 Vigna mungo HOM05D004806 ORTHO05D005397 5.9e-140 502.3 644 50.8
AUR62012206 Chenopodium quinoa HOM05D004806 ORTHO05D005397 1.7e-139 500.7 616 50.5
MELO3C008275.2 Cucumis melo HOM05D004806 ORTHO05D005397 1.7e-139 500.7 626 49.8
SalBow6G1823 Salvia bowleyana HOM05D004806 ORTHO05D005397 2.9e-139 500.0 691 48.0
PGR142G0174 Punica granatum HOM05D004806 ORTHO05D005397 3.8e-139 499.6 642 49.8
AUR62022839 Chenopodium quinoa HOM05D004806 ORTHO05D005397 5.0e-139 499.2 616 50.6
HanXRQChr08g0222261 Helianthus annuus HOM05D004806 ORTHO05D005397 1.9e-138 497.3 636 51.1
CiPaw.02G189800 Carya illinoinensis HOM05D004806 ORTHO05D005397 9.4e-138 495.0 660 50.0
Phvul.008G226400 Phaseolus vulgaris HOM05D004806 ORTHO05D005397 9.4e-138 495.0 641 48.4
Lalb_Chr04g0250791 Lupinus albus HOM05D004806 ORTHO05D005397 1.6e-137 494.2 678 46.8
COL.COLO4_25659 Corchorus olitorius HOM05D004806 ORTHO05D005397 3.9e-136 489.6 625 50.4
Sed0002029 Sechium edule HOM05D004806 ORTHO05D005397 3.9e-136 489.6 625 49.4
Hund13832 Selenicereus undatus HOM05D004806 ORTHO05D005397 5.1e-136 489.2 657 48.7
Hund15980 Selenicereus undatus HOM05D004806 ORTHO05D005397 5.7e-135 485.7 708 45.2
arahy.Tifrunner.gnm1.ann1.13YYB8 Arachis hypogaea HOM05D004806 ORTHO05D005397 5.3e-133 479.2 553 51.9
Solyc05g052630.4 Solanum lycopersicum HOM05D004806 ORTHO05D005397 9.1e-133 478.4 617 48.6
Ah.10g036410 Amaranthus hybridus HOM05D004806 ORTHO05D005397 1.5e-132 477.6 637 47.6
Eucgr.G03032 Eucalyptus grandis HOM05D004806 ORTHO05D005397 2.0e-132 477.2 620 49.0
Sc11g0007270 Simmondsia chinensis HOM05D004806 ORTHO05D005397 2.0e-132 477.2 642 49.4
Sopen05g031160 Solanum pennellii HOM05D004806 ORTHO05D005397 2.6e-132 476.9 618 48.7
Migut.F01427 Erythranthe guttata HOM05D004806 ORTHO05D005397 4.5e-132 476.1 608 50.8
Lsat_1_v5_gn_8_12421 Lactuca sativa HOM05D004806 ORTHO05D005397 4.5e-132 476.1 699 49.5
PGSC0003DMG400027178 Solanum tuberosum HOM05D004806 ORTHO05D005397 4.5e-132 476.1 616 49.8
LjContig00357g0026481 Lotus japonicus HOM05D004806 ORTHO05D005397 1.2e-129 468.0 642 48.1
Nitab4.5_0004338g0050 Nicotiana tabacum HOM05D004806 ORTHO05D005397 6.1e-129 465.7 598 48.0
EL10Ac2g04786 Beta vulgaris HOM05D004806 ORTHO05D005397 8.0e-129 465.3 734 42.9
Ah.16g103100 Amaranthus hybridus HOM05D004806 ORTHO05D005397 2.3e-128 463.8 659 46.6
THA.LOC104824306 Tarenaya hassleriana HOM05D004806 ORTHO05D005397 3.0e-128 463.4 614 50.2
Aqoxy4G02663 Aquilegia oxysepala HOM05D004806 ORTHO05D005397 3.7e-126 456.4 641 46.6
Aa31LG5G19660 Aethionema arabicum HOM05D004806 ORTHO05D005397 2.9e-123 446.8 644 45.8
Nitab4.5_0002100g0120 Nicotiana tabacum HOM05D004806 ORTHO05D005397 1.9e-122 444.1 593 47.4
Oeu055830.1 Olea europaea HOM05D004806 ORTHO05D005397 4.7e-121 439.5 665 45.6
unitig_52.g16836 Utricularia gibba HOM05D004806 ORTHO05D005397 1.1e-114 418.3 695 43.2
CsaV3_6G001640 Cucumis sativus L. HOM05D004806 ORTHO05D005397 2.5e-114 417.2 539 49.0
ClCG11G006350 Citrullus lanatus HOM05D004806 ORTHO05D005397 4.2e-114 416.4 541 48.6
PSO801G0450 Papaver somniferum HOM05D004806 ORTHO05D005397 4.7e-113 412.9 637 44.4
Haze_17182 Corylus avellana HOM05D004806 ORTHO05D005397 1.5e-111 407.9 552 48.9
HPP92_018194 Vanilla planifolia HOM05D004806 ORTHO05D005397 2.8e-110 403.7 580 44.8
Carub.0004s2208 Capsella rubella HOM05D004806 ORTHO05D005397 1.2e-108 398.3 636 43.7
PSO339G2633 Papaver somniferum HOM05D004806 ORTHO05D005397 4.5e-108 396.4 658 42.6
AL4G37530 Arabidopsis lyrata HOM05D004806 ORTHO05D005397 2.3e-107 394.0 637 43.8
CDE02G2339 Ceratophyllum demersum HOM05D004806 ORTHO05D005397 1.2e-105 388.3 634 41.8
AT2G39950 Arabidopsis thaliana HOM05D004806 ORTHO05D005397 1.6e-105 387.9 596 45.3
Sp4g22260 Schrenkiella parvula HOM05D004806 ORTHO05D005397 1.6e-105 387.9 596 44.6
Zm00001eb297980 Zea mays HOM05D004806 ORTHO05D005397 5.9e-100 369.4 534 46.8
BraA05t19615Z Brassica rapa HOM05D004806 ORTHO05D005397 2.3e-99 367.5 588 43.4
Thhalv10017559m.g Eutrema salsugineum HOM05D004806 ORTHO05D005397 5.0e-99 366.3 592 43.9
C04p07550 Brassica napus HOM05D004806 ORTHO05D005397 5.6e-98 362.8 556 44.6
BolC4t22372H Brassica oleracea HOM05D004806 ORTHO05D005397 5.6e-98 362.8 556 44.6
Aqoxy2G00978 Aquilegia oxysepala HOM05D004806 ORTHO05D005397 8.9e-96 355.5 542 44.6
Oeu036630.1 Olea europaea HOM05D004806 ORTHO05D005397 6.6e-91 339.3 539 43.8
SGA_v2.0_scaffold76G25081 Striga asiatica HOM05D004806 ORTHO05D005397 3.6e-89 333.6 682 39.6
SGA_v2.0_scaffold343G49443 Striga asiatica HOM05D004806 ORTHO05D005397 3.2e-85 320.5 555 42.3
Sc11g0006990 Simmondsia chinensis HOM05D004806 ORTHO05D005397 6.0e-84 316.2 238 66.8
Glyma.02G254400 Glycine max HOM05D004806 ORTHO05D005397 7.8e-84 315.8 498 44.8
Rhsim03G0140100 Rhododendron simsii HOM05D004806 ORTHO05D005397 5.1e-83 313.2 579 40.1
Sed0010788 Sechium edule HOM05D004806 ORTHO05D005397 4.4e-79 300.1 494 42.7
Manes.07G125400 Manihot esculenta HOM05D004806 ORTHO05D005397 8.6e-75 285.8 426 49.8
GSVIVG01016366001 Vitis vinifera HOM05D004806 ORTHO05D005397 9.5e-74 282.3 193 69.9
ATR0618G022 Amborella trichopoda HOM05D004806 ORTHO05D005397 2.3e-67 261.2 263 55.1
TAR623G1028 Trochodendron aralioides HOM05D004806 ORTHO05D005397 3.6e-65 253.8 600 36.5
CARHR134870 Cardamine hirsuta HOM05D004806 ORTHO05D005397 6.9e-64 249.6 523 39.4
CDE09G0712 Ceratophyllum demersum HOM05D004806 ORTHO05D005397 1.3e-62 245.4 239 52.3
Lalb_Chr17g0346601 Lupinus albus HOM05D004806 ORTHO05D005397 7.1e-61 239.6 495 37.6
AagrBONN_evm.TU.Sc2ySwM_368.289 Anthoceros agrestis HOM05D004806 ORTHO05D005397 2.4e-48 198.0 223 47.1
Mapoly0096s0071 Marchantia polymorpha HOM05D004806 ORTHO05D005397 8.4e-46 189.5 316 37.3
SHI03525 Sapria himalayana HOM05D004806 ORTHO05D005397 5.5e-45 186.8 437 33.6
CBR_g37391 Chara braunii HOM05D004806 ORTHO05D005397 3.4e-39 167.5 319 36.4
MD07G1214200 Malus domestica HOM05D004806 ORTHO05D005397 2.2e-38 164.9 123 67.5
Sabra10G0148400 Salix brachista HOM05D004806 ORTHO05D005397 2.9e-38 164.5 136 63.2
RcHm_v2.0_Chr1g0369361 Rosa chinensis HOM05D004806 ORTHO05D005397 4.2e-37 160.6 214 49.5
Oeu059753.1 Olea europaea HOM05D004806 ORTHO05D005397 5.5e-37 160.2 133 63.2
TPR.G40368 Trifolium pratense HOM05D004806 ORTHO05D005397 6.1e-36 156.8 141 63.1
ECA238G1534 Erigeron canadensis HOM05D004806 ORTHO05D005397 3.7e-33 147.5 74 98.6
SMO358G0301 Selaginella moellendorffii HOM05D004806 ORTHO05D005397 1.8e-32 145.2 413 32.0
Lalb_Chr17g0346611 Lupinus albus HOM05D004806 ORTHO05D005397 1.2e-31 142.5 113 64.6
A05p06470 Brassica napus HOM05D004806 ORTHO05D005397 5.9e-31 140.2 102 66.7
BcaB02g09066 Brassica carinata HOM05D004806 ORTHO05D005397 2.9e-30 137.9 178 47.2
CDE09G1248 Ceratophyllum demersum HOM05D000530 ORTHO05D003341 5.0e-30 137.1 235 41.7
Oeu022381.1 Olea europaea HOM05D004806 ORTHO05D005397 5.1e-27 127.1 132 56.1
SHI03526 Sapria himalayana HOM05D004806 ORTHO05D005397 7.4e-26 123.2 112 53.6
Os07g0100500 Oryza sativa ssp. japonica HOM05D004806 ORTHO05D005397 4.5e-23 114.0 74 71.6
ATR0618G087 Amborella trichopoda HOM05D004806 ORTHO05D005397 5.1e-19 100.5 186 41.9
Haze_17183 Corylus avellana HOM05D004806 ORTHO05D005397 5.1e-19 100.5 86 65.1
SalBow6G4818 Salvia bowleyana HOM05D004806 ORTHO05D005397 1.7e-17 95.5 73 68.5
AagrBONN_evm.TU.Sc2ySwM_369.624 Anthoceros agrestis HOM05D004806 ORTHO05D005397 7.7e-15 86.7 425 26.8
Zm00001eb057510 Zea mays HOM05D004806 ORTHO05D005397 1.3e-14 85.9 73 54.8
ATR0723G011 Amborella trichopoda HOM05D004806 ORTHO05D005397 1.2e-12 79.3 72 54.2
Oeu043075.1 Olea europaea HOM05D004806 ORTHO05D005397 1.2e-12 79.3 45 84.4
CAN.G853.43 Capsicum annuum HOM05D004806 ORTHO05D005397 1.6e-12 79.0 67 61.2
RcHm_v2.0_Chr1g0313541 Rosa chinensis HOM05D004806 ORTHO05D005397 3.0e-11 74.7 80 50.0
HanXRQChr06g0174351 Helianthus annuus HOM05D004806 ORTHO05D005397 1.1e-10 72.8 61 67.2
Pp3c26_8620 Physcomitrium patens HOM05D004806 ORTHO05D005397 3.1e-08 64.7 131 31.3
Ah.05g175410 Amaranthus hybridus HOM05D004806 ORTHO05D005397 7.0e-08 63.5 45 71.1
Oeu021121.1 Olea europaea HOM05D004806 ORTHO05D005397 1.2e-07 62.8 42 66.7
Oeu059752.1 Olea europaea HOM05D004806 ORTHO05D005397 1.6e-07 62.4 137 33.6
SalBow2G3552 Salvia bowleyana HOM05D034888 ORTHO05D005397 7.7e-07 60.1 51 58.8


User provided reference genes

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