Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA238G2786 Erigeron canadensis HOM05D003010 ORTHO05D003623 6.0e-77 290.8 151 100.0
HanXRQChr14g0461131 Helianthus annuus HOM05D003010 ORTHO05D003623 3.4e-48 195.3 151 71.5
Lsat_1_v5_gn_2_127061 Lactuca sativa HOM05D003010 ORTHO05D003623 4.1e-33 145.2 91 84.6
Lj1A974G32 Lonicera japonica HOM05D003010 ORTHO05D003623 2.0e-19 99.8 117 47.0
Actinidia01040 Actinidia chinensis HOM05D000255 ORTHO05D000935 4.4e-19 98.6 116 50.9
Cc02_g04820 Coffea canephora HOM05D003010 ORTHO05D003623 7.4e-19 97.8 151 42.4
Nitab4.5_0002236g0070 Nicotiana tabacum HOM05D003010 ORTHO05D003623 1.7e-18 96.7 120 49.2
Nitab4.5_0002211g0010 Nicotiana tabacum HOM05D003010 ORTHO05D003623 3.7e-18 95.5 120 49.2
Actinidia31768 Actinidia chinensis HOM05D003010 ORTHO05D003623 4.8e-18 95.1 116 50.0
vmacro09926 Vaccinium macrocarpon HOM05D003010 ORTHO05D003623 1.1e-17 94.0 116 53.4
Peaxi162Scf00167g01022 Petunia axillaris HOM05D003010 ORTHO05D003623 1.4e-17 93.6 122 49.2
Solyc05g052080.1 Solanum lycopersicum HOM05D003010 ORTHO05D003623 1.2e-16 90.5 123 51.2
Rhsim09G0189200 Rhododendron simsii HOM05D003010 ORTHO05D003623 2.0e-16 89.7 119 48.7
COL.COLO4_37328 Corchorus olitorius HOM05D000255 ORTHO05D000935 8.5e-15 84.3 118 45.8
Lj8C48T14 Lonicera japonica HOM05D003010 ORTHO05D003623 3.2e-14 82.4 92 53.3
SalBow3G0012 Salvia bowleyana HOM05D003010 ORTHO05D003623 4.2e-14 82.0 96 52.1
SalBow3G1605 Salvia bowleyana HOM05D003010 ORTHO05D003623 4.2e-14 82.0 96 52.1
Dinv16875 Davidia involucrata HOM05D003010 ORTHO05D003623 9.4e-14 80.9 95 49.5
Migut.F00533 Erythranthe guttata HOM05D003010 ORTHO05D003623 1.6e-13 80.1 116 45.7
Hma1.2p1_1014F.1_g248010 Hydrangea macrophylla HOM05D003010 ORTHO05D003623 1.6e-13 80.1 95 50.5
Hma1.2p1_1305F.1_g274559 Hydrangea macrophylla HOM05D003010 ORTHO05D003623 1.6e-13 80.1 95 50.5
Potri.001G080500 Populus trichocarpa HOM05D003010 ORTHO05D003623 1.4e-12 77.0 123 39.0
GSVIVG01013867001 Vitis vinifera HOM05D003010 ORTHO05D003623 1.4e-12 77.0 114 41.2
Duzib205G1260 Durio zibethinus HOM05D003010 ORTHO05D003623 1.8e-12 76.6 116 43.1
Atru.chr1.925 Acer truncatum HOM05D003010 ORTHO05D003623 2.3e-12 76.3 141 41.1
Gohir.D09G249800 Gossypium hirsutum HOM05D003010 ORTHO05D003623 3.0e-12 75.9 116 42.2
Gorai.006G274200 Gossypium raimondii HOM05D003010 ORTHO05D003623 3.0e-12 75.9 116 42.2
Sed0025535 Sechium edule HOM05D003010 ORTHO05D003623 4.0e-12 75.5 116 37.9
Thecc.03G147400 Theobroma cacao HOM05D003010 ORTHO05D003623 6.7e-12 74.7 116 40.5
SGA_v2.0_scaffold60G20833 Striga asiatica HOM05D003010 ORTHO05D003623 8.8e-12 74.3 131 39.7
Carub.0008s2233 Capsella rubella HOM05D003010 ORTHO05D003623 1.2e-11 73.9 116 38.8
Sabra01G0057700 Salix brachista HOM05D000255 ORTHO05D000935 1.2e-11 73.9 153 34.6
QL09p027705 Quercus lobata HOM05D003010 ORTHO05D003623 1.5e-11 73.6 119 42.9
CiPaw.07G184100 Carya illinoinensis HOM05D003010 ORTHO05D003623 2.0e-11 73.2 118 40.7
PGR042G0835 Punica granatum HOM05D003010 ORTHO05D003623 2.0e-11 73.2 116 38.8
TAR629G3508 Trochodendron aralioides HOM05D003010 ORTHO05D003623 2.0e-11 73.2 137 38.7
AL8G38370 Arabidopsis lyrata HOM05D003010 ORTHO05D003623 3.3e-11 72.4 116 39.7
AT5G61630 Arabidopsis thaliana HOM05D003010 ORTHO05D003623 3.3e-11 72.4 116 39.7
DCAR_020169 Daucus carota HOM05D003010 ORTHO05D003623 3.3e-11 72.4 81 51.9
CARHR275430 Cardamine hirsuta HOM05D003010 ORTHO05D003623 4.4e-11 72.0 121 38.0
Sp6g35370 Schrenkiella parvula HOM05D003010 ORTHO05D003623 9.7e-11 70.9 116 41.4
BcaB01g05695 Brassica carinata HOM05D003010 ORTHO05D003623 1.3e-10 70.5 116 41.4
BcaB01g06045 Brassica carinata HOM05D003010 ORTHO05D003623 1.3e-10 70.5 116 41.4
BolC3t12913H Brassica oleracea HOM05D003010 ORTHO05D003623 1.3e-10 70.5 116 41.4
Haze_22213 Corylus avellana HOM05D000255 ORTHO05D000935 1.3e-10 70.5 125 34.4
C03p03770 Brassica napus HOM05D003010 ORTHO05D003623 1.7e-10 70.1 116 41.4
BcaB01g05694 Brassica carinata HOM05D003010 ORTHO05D003623 2.2e-10 69.7 115 41.7
A03p03330 Brassica napus HOM05D003010 ORTHO05D003623 2.2e-10 69.7 116 40.5
BraA03t09685Z Brassica rapa HOM05D003010 ORTHO05D003623 2.2e-10 69.7 116 40.5
Aa31LG3G18910 Aethionema arabicum HOM05D003010 ORTHO05D003623 2.8e-10 69.3 116 40.5
Cfa013595 Carpinus fangiana HOM05D000255 ORTHO05D000935 2.8e-10 69.3 131 37.4
Gohir.A09G248900 Gossypium hirsutum HOM05D003010 ORTHO05D003623 3.7e-10 68.9 114 40.4
BcaC06g33261 Brassica carinata HOM05D003010 ORTHO05D003623 6.3e-10 68.2 116 37.1
A03p47240 Brassica napus HOM05D003010 ORTHO05D003623 6.3e-10 68.2 116 37.1
C07p45350 Brassica napus HOM05D003010 ORTHO05D003623 6.3e-10 68.2 116 37.1
BolC7t45056H Brassica oleracea HOM05D003010 ORTHO05D003623 6.3e-10 68.2 116 37.1
BraA03t13851Z Brassica rapa HOM05D003010 ORTHO05D003623 6.3e-10 68.2 116 37.1
MD07G1247700 Malus domestica HOM05D003010 ORTHO05D003623 6.3e-10 68.2 118 38.1
ClCG07G017110 Citrullus lanatus HOM05D003010 ORTHO05D003623 8.2e-10 67.8 118 39.0
Thhalv10005478m.g Eutrema salsugineum HOM05D003010 ORTHO05D003623 1.1e-09 67.4 116 36.2
Medtr1g090200 Medicago truncatula HOM05D003010 ORTHO05D003623 1.1e-09 67.4 95 42.1
BcaC06g33143 Brassica carinata HOM05D003010 ORTHO05D003623 1.4e-09 67.0 116 36.2
CARHR205640 Cardamine hirsuta HOM05D003010 ORTHO05D003623 1.4e-09 67.0 117 41.0
HPP92_023172 Vanilla planifolia HOM05D003010 ORTHO05D003623 1.4e-09 67.0 112 37.5
AT5G07490 Arabidopsis thaliana HOM05D003010 ORTHO05D003623 1.8e-09 66.6 116 39.7
PSO782G2859 Papaver somniferum HOM05D003010 ORTHO05D003623 1.8e-09 66.6 116 37.9
Prupe.2G271700 Prunus persica HOM05D003010 ORTHO05D003623 1.8e-09 66.6 119 39.5
Cpa.g.sc13.241 Carica papaya HOM05D003010 ORTHO05D003623 3.1e-09 65.9 120 37.5
Migut.F01206 Erythranthe guttata HOM05D003010 ORTHO05D003623 5.3e-09 65.1 91 45.1
Thhalv10015492m.g Eutrema salsugineum HOM05D003010 ORTHO05D003623 5.3e-09 65.1 60 51.7
Nn6g33810 Nelumbo nucifera HOM05D003010 ORTHO05D003623 5.3e-09 65.1 118 34.7
Sp2g24840 Schrenkiella parvula HOM05D003010 ORTHO05D003623 5.3e-09 65.1 118 35.6
MELO3C017634.2 Cucumis melo HOM05D003010 ORTHO05D003623 7.0e-09 64.7 119 37.0
THA.LOC104801625 Tarenaya hassleriana HOM05D003010 ORTHO05D003623 7.0e-09 64.7 116 37.9
Hund11331 Selenicereus undatus HOM05D003010 ORTHO05D003623 1.6e-08 63.5 110 38.2
AL6G17794 Arabidopsis lyrata HOM05D003010 ORTHO05D003623 2.0e-08 63.2 116 37.9
Gohir.D08G184800 Gossypium hirsutum HOM05D003010 ORTHO05D003623 3.5e-08 62.4 94 40.4
PSO063G3783 Papaver somniferum HOM05D003010 ORTHO05D003623 4.5e-08 62.0 109 36.7
TAR636G0256 Trochodendron aralioides HOM05D003010 ORTHO05D003623 4.5e-08 62.0 151 31.1
BcaC03g18078 Brassica carinata HOM05D003010 ORTHO05D003623 5.9e-08 61.6 117 35.9
A02p41560 Brassica napus HOM05D003010 ORTHO05D003623 5.9e-08 61.6 117 35.9
C02p61500 Brassica napus HOM05D003010 ORTHO05D003623 5.9e-08 61.6 117 35.9
BolC2t12200H Brassica oleracea HOM05D003010 ORTHO05D003623 5.9e-08 61.6 117 35.9
BraA02t09098Z Brassica rapa HOM05D003010 ORTHO05D003623 5.9e-08 61.6 117 35.9
CsaV3_4G004320 Cucumis sativus L. HOM05D003010 ORTHO05D003623 5.9e-08 61.6 98 41.8
Solyc08g078060.3 Solanum lycopersicum HOM05D003010 ORTHO05D003623 5.9e-08 61.6 106 34.9
Lj5g0011838 Lotus japonicus HOM05D003010 ORTHO05D003623 7.7e-08 61.2 119 33.6
PGSC0003DMG400026255 Solanum tuberosum HOM05D003010 ORTHO05D003623 7.7e-08 61.2 106 34.9
FAN10G3636 Fragaria x ananassa HOM05D003010 ORTHO05D003623 1.7e-07 60.1 60 48.3
Nitab4.5_0009955g0020 Nicotiana tabacum HOM05D003010 ORTHO05D003623 1.7e-07 60.1 140 29.3
FAN01G3086 Fragaria x ananassa HOM05D003010 ORTHO05D003623 2.2e-07 59.7 116 36.2
Nn8g39368 Nelumbo nucifera HOM05D003010 ORTHO05D010439 2.2e-07 59.7 144 30.6
Ca_10413_v3 Cicer arietinum L. HOM05D003010 ORTHO05D000523 2.9e-07 59.3 122 34.4
Ciclev10007152m.g Citrus clementina HOM05D003010 ORTHO05D003623 2.9e-07 59.3 91 41.8
Eucgr.A02926 Eucalyptus grandis HOM05D003010 ORTHO05D003623 2.9e-07 59.3 116 32.8
TWI39G0461 Tripterygium wilfordii HOM05D003010 ORTHO05D003623 6.5e-07 58.2 120 33.3
Gohir.A08G165900 Gossypium hirsutum HOM05D003010 ORTHO05D003623 8.5e-07 57.8 94 38.3
Gorai.004G194100 Gossypium raimondii HOM05D003010 ORTHO05D003623 8.5e-07 57.8 94 38.3
Sopen05g030630 Solanum pennellii HOM05D003010 ORTHO05D003623 8.5e-07 57.8 61 47.5
Sopen08g026560 Solanum pennellii HOM05D003010 ORTHO05D003623 1.1e-06 57.4 106 34.9
Lalb_Chr06g0169801 Lupinus albus HOM05D003010 ORTHO05D003623 1.5e-06 57.0 116 32.8
MBI04_g29855_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 1.5e-06 57.0 113 34.5
Nitab4.5_0000500g0010 Nicotiana tabacum HOM05D003010 ORTHO05D003623 1.5e-06 57.0 116 31.0
Peaxi162Scf00446g00412 Petunia axillaris HOM05D003010 ORTHO05D003623 1.5e-06 57.0 115 31.3
arahy.Tifrunner.gnm1.ann1.Y5VFEC Arachis hypogaea HOM05D003010 ORTHO05D003623 1.9e-06 56.6 96 39.6
EL10Ac5g12296 Beta vulgaris HOM05D003010 ORTHO05D003623 1.9e-06 56.6 140 31.4
Haze_25626 Corylus avellana HOM05D003010 ORTHO05D010439 1.9e-06 56.6 91 39.6
Duzib205G1418 Durio zibethinus HOM05D003010 ORTHO05D003623 1.9e-06 56.6 92 37.0
Glyma.10G193700 Glycine max HOM05D003010 ORTHO05D003623 1.9e-06 56.6 117 32.5
PSO339G5114 Papaver somniferum HOM05D003010 ORTHO05D010439 1.9e-06 56.6 101 35.6
PSO801G0586 Papaver somniferum HOM05D003010 ORTHO05D003623 1.9e-06 56.6 100 36.0
CDE01G0248 Ceratophyllum demersum HOM05D003010 ORTHO05D003623 2.5e-06 56.2 125 32.8
Aqoxy3G02705 Aquilegia oxysepala HOM05D003010 ORTHO05D003623 3.2e-06 55.8 111 31.5
Glyma.20G196700 Glycine max HOM05D003010 ORTHO05D003623 3.2e-06 55.8 117 32.5
arahy.Tifrunner.gnm1.ann1.I909QJ Arachis hypogaea HOM05D003010 ORTHO05D003623 4.2e-06 55.5 117 35.9
Migut.A01045 Erythranthe guttata HOM05D003010 ORTHO05D003623 4.2e-06 55.5 107 35.5
Thhalv10017475m.g Eutrema salsugineum HOM05D003010 ORTHO05D003623 4.2e-06 55.5 102 37.3
FvH4_7g26830 Fragaria vesca HOM05D003010 ORTHO05D003623 5.5e-06 55.1 117 35.9
FAN03G0814 Fragaria x ananassa HOM05D000255 ORTHO05D003623 5.5e-06 55.1 117 35.9
Manes.14G039600 Manihot esculenta HOM05D003010 ORTHO05D003623 7.2e-06 54.7 107 30.8
RcHm_v2.0_Chr1g0373521 Rosa chinensis HOM05D003010 ORTHO05D003623 7.2e-06 54.7 116 32.8
Carub.0006s0648 Capsella rubella HOM05D003010 ORTHO05D003623 9.4e-06 54.3 118 35.6
Thecc.03G243800 Theobroma cacao HOM05D003010 ORTHO05D003623 9.4e-06 54.3 92 37.0


User provided reference genes

Program Settings