Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA238G2776 Erigeron canadensis HOM05D005146 ORTHO05D006752 3.4e-155 551.6 273 100.0
Lsat_1_v5_gn_2_8601 Lactuca sativa HOM05D005146 ORTHO05D006752 1.2e-147 526.6 271 94.8
HanXRQChr06g0183611 Helianthus annuus HOM05D005146 ORTHO05D006752 2.4e-145 518.8 273 92.7
QL02p011373 Quercus lobata HOM05D005146 ORTHO05D006752 6.7e-135 484.2 271 83.8
Atru.chr13.312 Acer truncatum HOM05D005146 ORTHO05D006752 1.1e-134 483.4 271 84.9
DCAR_009928 Daucus carota HOM05D005146 ORTHO05D006752 5.6e-134 481.1 270 84.8
GSVIVG01009887001 Vitis vinifera HOM05D005146 ORTHO05D006752 7.4e-134 480.7 271 84.1
Cc10_g01800 Coffea canephora HOM05D005146 ORTHO05D006752 3.7e-133 478.4 271 84.9
Rhsim06G0022400 Rhododendron simsii HOM05D005146 ORTHO05D006752 3.7e-133 478.4 270 85.2
CsaV3_2G029420 Cucumis sativus L. HOM05D005146 ORTHO05D006752 6.2e-133 477.6 272 82.7
CiPaw.07G151400 Carya illinoinensis HOM05D005146 ORTHO05D006752 2.4e-132 475.7 271 81.9
RcHm_v2.0_Chr6g0302671 Rosa chinensis HOM05D005146 ORTHO05D006752 3.1e-132 475.3 271 82.3
Sed0001191 Sechium edule HOM05D005146 ORTHO05D006752 4.0e-132 474.9 272 81.6
Ciclev10002090m.g Citrus clementina HOM05D005146 ORTHO05D006752 5.3e-132 474.6 271 81.9
MD15G1013600 Malus domestica HOM05D005146 ORTHO05D006752 9.0e-132 473.8 272 82.4
TWI56G0936 Tripterygium wilfordii HOM05D005146 ORTHO05D006752 2.6e-131 472.2 271 82.7
Cfa006669 Carpinus fangiana HOM05D005146 ORTHO05D006752 4.5e-131 471.5 271 83.4
FAN27G1976 Fragaria x ananassa HOM05D005146 ORTHO05D006752 4.5e-131 471.5 271 81.9
Gohir.A08G010500 Gossypium hirsutum HOM05D005146 ORTHO05D006752 4.5e-131 471.5 271 81.5
Potri.002G023700 Populus trichocarpa HOM05D005146 ORTHO05D006752 1.0e-130 470.3 271 80.8
FvH4_2g38650 Fragaria vesca HOM05D005146 ORTHO05D006752 1.3e-130 469.9 271 81.5
Haze_04102 Corylus avellana HOM05D005146 ORTHO05D006752 1.7e-130 469.5 271 82.7
FAN15G2679 Fragaria x ananassa HOM05D005146 ORTHO05D006752 1.7e-130 469.5 271 81.5
Gohir.D08G020900 Gossypium hirsutum HOM05D005146 ORTHO05D006752 2.2e-130 469.2 271 81.5
Dinv31832 Davidia involucrata HOM05D005146 ORTHO05D006752 3.8e-130 468.4 270 83.3
Manes.05G148600 Manihot esculenta HOM05D005146 ORTHO05D006752 3.8e-130 468.4 271 81.5
Cpa.g.sc1059.3 Carica papaya HOM05D005146 ORTHO05D006752 6.5e-130 467.6 271 81.5
Eucgr.F01641 Eucalyptus grandis HOM05D005146 ORTHO05D006752 6.5e-130 467.6 271 80.1
Manes.11G065850 Manihot esculenta HOM05D005146 ORTHO05D006752 8.4e-130 467.2 271 81.2
Sabra02G0019300 Salix brachista HOM05D005146 ORTHO05D006752 1.1e-129 466.8 271 80.4
Prupe.1G367100 Prunus persica HOM05D005146 ORTHO05D006752 1.4e-129 466.5 271 80.4
CAN.G311.14 Capsicum annuum HOM05D005146 ORTHO05D006752 1.9e-129 466.1 270 81.1
FAN20G2808 Fragaria x ananassa HOM05D005146 ORTHO05D006752 1.9e-129 466.1 271 81.2
Thecc.09G245400 Theobroma cacao HOM05D005146 ORTHO05D006752 1.9e-129 466.1 271 80.8
CANSAT11G0704 Cannabis sativa HOM05D005146 ORTHO05D006752 2.5e-129 465.7 271 80.4
Nitab4.5_0001540g0020 Nicotiana tabacum HOM05D005146 ORTHO05D006752 5.5e-129 464.5 270 81.9
ATR0797G002 Amborella trichopoda HOM05D005146 ORTHO05D006752 1.2e-128 463.4 270 82.2
MD08G1014100 Malus domestica HOM05D005146 ORTHO05D006752 1.6e-128 463.0 272 80.1
Nn6g32362 Nelumbo nucifera HOM05D005146 ORTHO05D006752 1.6e-128 463.0 270 80.7
PSO700G0287 Papaver somniferum HOM05D005146 ORTHO05D006752 1.6e-128 463.0 270 80.7
PGSC0003DMG400003775 Solanum tuberosum HOM05D005146 ORTHO05D006752 2.1e-128 462.6 270 80.7
Actinidia15413 Actinidia chinensis HOM05D005146 ORTHO05D006752 2.7e-128 462.2 270 82.6
Solyc04g081310.3 Solanum lycopersicum HOM05D005146 ORTHO05D006752 4.6e-128 461.5 270 80.7
Sopen04g034930 Solanum pennellii HOM05D005146 ORTHO05D006752 4.6e-128 461.5 270 80.7
PGR083G0855 Punica granatum HOM05D005146 ORTHO05D006752 7.9e-128 460.7 271 79.7
PSO170G4907 Papaver somniferum HOM05D005146 ORTHO05D006752 1.0e-127 460.3 269 80.7
Migut.N03153 Erythranthe guttata HOM05D005146 ORTHO05D006752 2.3e-127 459.1 271 79.0
Medtr3g113750 Medicago truncatula HOM05D005146 ORTHO05D006752 2.3e-127 459.1 271 79.0
SGA_v2.0_scaffold12G05971 Striga asiatica HOM05D005146 ORTHO05D006752 3.0e-127 458.8 271 79.3
BcaC09g51970 Brassica carinata HOM05D005146 ORTHO05D006752 3.9e-127 458.4 272 79.8
BolC1t00708H Brassica oleracea HOM05D005146 ORTHO05D006752 3.9e-127 458.4 272 79.8
Glyma.20G014100 Glycine max HOM05D005146 ORTHO05D006752 3.9e-127 458.4 271 80.4
BraA01t00610Z Brassica rapa HOM05D005146 ORTHO05D006752 5.1e-127 458.0 272 79.8
C01p07160 Brassica napus HOM05D005146 ORTHO05D006752 6.7e-127 457.6 272 79.8
Lalb_Chr23g0266181 Lupinus albus HOM05D005146 ORTHO05D006752 1.1e-126 456.8 271 77.5
THA.LOC104825772 Tarenaya hassleriana HOM05D005146 ORTHO05D006752 1.5e-126 456.4 271 79.0
VMungo0251G0853 Vigna mungo HOM05D005146 ORTHO05D006752 1.5e-126 456.4 271 79.3
Carub.0007s0877 Capsella rubella HOM05D005146 ORTHO05D006752 1.9e-126 456.1 272 80.1
Ca_14210_v3 Cicer arietinum L. HOM05D005146 ORTHO05D006752 1.9e-126 456.1 271 78.6
A01p06490 Brassica napus HOM05D005146 ORTHO05D006752 2.5e-126 455.7 272 79.4
Psat5g013440 Pisum sativum HOM05D005146 ORTHO05D006752 2.5e-126 455.7 271 78.2
Hund05199 Selenicereus undatus HOM05D005146 ORTHO05D006752 2.5e-126 455.7 270 79.3
TPR.G34539 Trifolium pratense HOM05D005146 ORTHO05D006752 2.5e-126 455.7 271 78.6
AT4G31790 Arabidopsis thaliana HOM05D005146 ORTHO05D006752 4.3e-126 454.9 272 80.1
BcaNung05185 Brassica carinata HOM05D005146 ORTHO05D006752 4.3e-126 454.9 272 79.0
Glyma.07G217500 Glycine max HOM05D005146 ORTHO05D006752 4.3e-126 454.9 271 79.7
Aqoxy5G01768 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 5.7e-126 454.5 270 79.6
Thhalv10025950m.g Eutrema salsugineum HOM05D005146 ORTHO05D006752 5.7e-126 454.5 273 80.2
Sp7g29580 Schrenkiella parvula HOM05D005146 ORTHO05D006752 5.7e-126 454.5 272 79.4
CARHR239690 Cardamine hirsuta HOM05D005146 ORTHO05D006752 9.7e-126 453.8 273 79.5
Phvul.001G002400 Phaseolus vulgaris HOM05D005146 ORTHO05D006752 2.8e-125 452.2 271 79.3
EL10Ac6g13895 Beta vulgaris HOM05D005146 ORTHO05D006752 3.7e-125 451.8 304 73.7
CSS0007392 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 3.7e-125 451.8 270 81.1
CSS0032974 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 3.7e-125 451.8 270 81.1
AUR62019460 Chenopodium quinoa HOM05D005146 ORTHO05D006752 6.3e-125 451.1 270 80.4
Lj1g0002754 Lotus japonicus HOM05D005146 ORTHO05D006752 6.3e-125 451.1 271 77.9
AL7G20220 Arabidopsis lyrata HOM05D005146 ORTHO05D006752 2.4e-124 449.1 272 79.4
Aa31LG2G18510 Aethionema arabicum HOM05D005146 ORTHO05D006752 9.0e-124 447.2 272 78.3
ClCG08G014400 Citrullus lanatus HOM05D005146 ORTHO05D006752 9.0e-124 447.2 272 77.9
Ah.08g209140 Amaranthus hybridus HOM05D005146 ORTHO05D006752 1.5e-123 446.4 302 73.2
COL.COLO4_37538 Corchorus olitorius HOM05D005146 ORTHO05D006752 2.0e-123 446.0 257 82.9
HPP92_027733 Vanilla planifolia HOM05D005146 ORTHO05D006752 3.4e-123 445.3 271 75.6
Os03g0355800 Oryza sativa ssp. japonica HOM05D005146 ORTHO05D006752 1.3e-122 443.4 270 75.9
unitig_746.g26814 Utricularia gibba HOM05D005146 ORTHO05D006752 3.8e-122 441.8 270 77.4
Lj5g0000481 Lotus japonicus HOM05D005146 ORTHO05D006752 5.0e-122 441.4 271 77.1
Aqoxy6G00492 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 7.2e-121 437.6 261 78.5
Oeu020876.1 Olea europaea HOM05D005146 ORTHO05D006752 7.2e-121 437.6 262 79.0
arahy.Tifrunner.gnm1.ann1.DQ6KFY Arachis hypogaea HOM05D005146 ORTHO05D006752 2.1e-120 436.0 271 75.3
arahy.Tifrunner.gnm1.ann1.VN499F Arachis hypogaea HOM05D005146 ORTHO05D006752 6.1e-120 434.5 271 75.3
arahy.Tifrunner.gnm1.ann1.RM6BI2 Arachis hypogaea HOM05D005146 ORTHO05D006752 1.1e-118 430.3 271 73.4
MELO3C011001.2 Cucumis melo HOM05D005146 ORTHO05D006752 2.0e-118 429.5 284 73.6
Zm00001eb017150 Zea mays HOM05D005146 ORTHO05D006752 4.3e-118 428.3 270 73.0
Duzib150G0501 Durio zibethinus HOM05D005146 ORTHO05D006752 4.1e-116 421.8 271 74.9
Gorai.004G015300 Gossypium raimondii HOM05D005146 ORTHO05D006752 5.3e-116 421.4 271 75.3
MBI09_g15694_MAGBIO Magnolia biondii HOM05D005146 ORTHO05D006752 2.0e-115 419.5 381 58.5
arahy.Tifrunner.gnm1.ann1.NX94TN Arachis hypogaea HOM05D005146 ORTHO05D006752 2.5e-113 412.5 301 65.8
AagrBONN_evm.TU.Sc2ySwM_117.1420 Anthoceros agrestis HOM05D005146 ORTHO05D006752 2.3e-111 406.0 272 67.6
Lsat_1_v5_gn_2_8681 Lactuca sativa HOM05D004999 ORTHO05D007513 2.3e-111 406.0 223 89.7
SalBow3G2629 Salvia bowleyana HOM05D005146 ORTHO05D006752 2.3e-111 406.0 241 78.8
Mapoly0107s0028 Marchantia polymorpha HOM05D005146 ORTHO05D006752 6.7e-111 404.4 271 67.9
Pp3c25_4490 Physcomitrium patens HOM05D005146 ORTHO05D006752 6.7e-111 404.4 271 68.3
CDE05G1835 Ceratophyllum demersum HOM05D005146 ORTHO05D006752 9.7e-110 400.6 241 77.6
HPP92_026026 Vanilla planifolia HOM05D005146 ORTHO05D006752 2.2e-109 399.4 245 75.5
AagrBONN_evm.TU.Sc2ySwM_368.2751 Anthoceros agrestis HOM05D005146 ORTHO05D006752 3.7e-109 398.7 272 66.9
Peaxi162Scf00438g00626 Petunia axillaris HOM05D005146 ORTHO05D006752 5.3e-108 394.8 270 71.1
vmacro21720 Vaccinium macrocarpon HOM05D005146 ORTHO05D006752 1.0e-106 390.6 221 84.6
RcHm_v2.0_Chr7g0221331 Rosa chinensis HOM05D005146 ORTHO05D006752 2.7e-104 382.5 271 70.1
Hma1.2p1_0638F.1_g193760 Hydrangea macrophylla HOM05D005146 ORTHO05D006752 2.6e-102 375.9 220 81.8
SMO146G0393 Selaginella moellendorffii HOM05D005146 ORTHO05D006752 1.3e-101 373.6 271 63.1
CBR_g41468 Chara braunii HOM05D005146 ORTHO05D006752 9.1e-100 367.5 271 64.9
CSS0032399 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 2.2e-98 362.8 251 73.3
TAR628G0140 Trochodendron aralioides HOM05D005146 ORTHO05D006752 1.0e-95 354.0 197 86.3
MCO08G273 Micromonas commoda HOM05D005146 ORTHO05D006752 1.4e-92 343.6 271 59.8
Cre05.g233300 Chlamydomonas reinhardtii HOM05D005146 ORTHO05D006752 2.7e-91 339.3 271 59.4
C09p44220 Brassica napus HOM05D005146 ORTHO05D006752 4.0e-87 325.5 272 60.7
BolC8t49001H Brassica oleracea HOM05D005146 ORTHO05D006752 1.2e-86 323.9 271 61.6
C08p13630 Brassica napus HOM05D005146 ORTHO05D006752 4.4e-86 322.0 271 61.3
PRCOL_00004436 Prasinoderma coloniale HOM05D005146 ORTHO05D006752 1.8e-84 316.6 288 54.2
BcaC04g20385 Brassica carinata HOM05D005146 ORTHO05D006752 3.3e-81 305.8 272 57.7
Sc26g0004380 Simmondsia chinensis HOM05D005146 ORTHO05D006752 4.2e-81 305.4 178 79.8
ATR0816G001 Amborella trichopoda HOM05D005146 ORTHO05D006752 4.9e-77 292.0 168 83.3
Haze_26822 Corylus avellana HOM05D005146 ORTHO05D006752 9.2e-76 287.7 276 50.0
Oeu039057.1 Olea europaea HOM05D005146 ORTHO05D006752 2.0e-75 286.6 240 61.7
BcaC04g20389 Brassica carinata HOM05D005146 ORTHO05D006752 3.9e-74 282.3 272 54.0
MSTRG.25237 Avicennia marina HOM05D005146 ORTHO05D006752 1.1e-68 264.2 152 79.6
Lj4A797T61 Lonicera japonica HOM05D005146 ORTHO05D006752 9.2e-68 261.2 152 83.6
AUR62036170 Chenopodium quinoa HOM05D005146 ORTHO05D006752 1.6e-64 250.4 206 63.1
Medtr1g107520 Medicago truncatula HOM05D005146 ORTHO05D006752 1.4e-63 247.3 165 72.1
BcaC04g20387 Brassica carinata HOM05D005146 ORTHO05D006752 7.5e-54 214.9 272 46.7
BolC9t57294H Brassica oleracea HOM05D005146 ORTHO05D006752 1.2e-51 207.6 154 65.6
Duzib170G0783 Durio zibethinus HOM05D005146 ORTHO05D006752 1.1e-49 201.1 271 43.9
MELO3C029148.2 Cucumis melo HOM05D005146 ORTHO05D006752 4.0e-47 192.6 180 55.0
CSS0002428 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 3.8e-45 186.0 270 43.3
Medtr3g114210 Medicago truncatula HOM05D005146 ORTHO05D006752 9.3e-36 154.8 159 54.1
BolC8t52160H Brassica oleracea HOM05D005146 ORTHO05D032927 2.1e-35 153.7 261 42.1
Lj4A797T60 Lonicera japonica HOM05D005146 ORTHO05D006752 2.7e-35 153.3 90 80.0
BcaC07g41610 Brassica carinata HOM05D005146 ORTHO05D032927 2.3e-34 150.2 269 39.8
BcaC04g20388 Brassica carinata HOM05D005146 ORTHO05D006752 1.4e-31 141.0 185 46.5
Lsat_1_v5_gn_2_8581 Lactuca sativa HOM05D000202 ORTHO05D000117 1.5e-30 137.5 135 54.1
C08p46100 Brassica napus HOM05D005146 ORTHO05D032927 3.4e-30 136.3 261 38.3
Lsat_1_v5_gn_2_8661 Lactuca sativa HOM05D000202 ORTHO05D000117 1.3e-29 134.4 135 53.3
Oeu039054.1 Olea europaea HOM05D000784 ORTHO05D000116 2.2e-29 133.7 93 67.7
SEGI_30125 Sequoiadendron giganteum HOM05D005146 ORTHO05D006752 2.7e-27 126.7 98 62.2
MELO3C032066.2 Cucumis melo HOM05D005146 ORTHO05D006752 6.0e-19 99.0 73 63.0
CAN.G1688.3 Capsicum annuum HOM05D005146 ORTHO05D011342 6.7e-18 95.5 56 76.8
BcaNung04119 Brassica carinata HOM05D001941 ORTHO05D002198 4.6e-11 72.8 45 75.6
MELO3C033356.2 Cucumis melo HOM05D005146 ORTHO05D166957 4.6e-11 72.8 49 67.3
Actinidia16979 Actinidia chinensis HOM05D005146 ORTHO05D006752 5.1e-10 69.3 78 50.0
Cfa017682 Carpinus fangiana HOM05D005146 ORTHO05D123472 1.6e-08 64.3 45 71.1


User provided reference genes

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