Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA238G2061 Erigeron canadensis HOM05D004070 ORTHO05D004904 0.0e+00 1421.0 687 100.0
HanXRQChr17g0536301 Helianthus annuus HOM05D004070 ORTHO05D004904 1.4e-301 1039.3 677 72.4
Lsat_1_v5_gn_2_125521 Lactuca sativa HOM05D004070 ORTHO05D004904 8.2e-299 1030.0 675 73.9
Dinv10587 Davidia involucrata HOM05D004070 ORTHO05D004904 7.2e-271 937.2 688 65.7
Lj1A961T78 Lonicera japonica HOM05D004070 ORTHO05D004904 4.4e-260 901.4 730 60.1
Rhsim03G0147100 Rhododendron simsii HOM05D004070 ORTHO05D004904 8.3e-259 897.1 669 63.4
TAR623G0471 Trochodendron aralioides HOM05D004070 ORTHO05D004904 3.9e-256 888.3 691 63.0
Lj8A62T48 Lonicera japonica HOM05D004070 ORTHO05D004904 8.6e-256 887.1 604 69.2
vmacro06948 Vaccinium macrocarpon HOM05D004070 ORTHO05D004904 5.6e-255 884.4 714 59.9
Peaxi162Scf00284g00526 Petunia axillaris HOM05D004070 ORTHO05D004904 2.8e-254 882.1 684 62.0
Potri.010G184200 Populus trichocarpa HOM05D004070 ORTHO05D004904 1.4e-253 879.8 684 62.6
Rhsim03G0146900 Rhododendron simsii HOM05D004070 ORTHO05D004904 6.8e-253 877.5 688 61.5
Nitab4.5_0000058g0090 Nicotiana tabacum HOM05D004070 ORTHO05D004904 1.7e-251 872.8 682 61.3
MSTRG.8925 Avicennia marina HOM05D004070 ORTHO05D004904 1.1e-250 870.2 681 61.7
Oeu043174.1 Olea europaea HOM05D004070 ORTHO05D004904 2.4e-250 869.0 716 61.0
Sabra10G0141400 Salix brachista HOM05D004070 ORTHO05D004904 3.2e-250 868.6 712 60.4
Nitab4.5_0003710g0040 Nicotiana tabacum HOM05D004070 ORTHO05D004904 7.1e-250 867.5 685 60.4
Solyc06g050930.3 Solanum lycopersicum HOM05D004070 ORTHO05D004904 2.7e-249 865.5 683 62.1
Duzib128G0764 Durio zibethinus HOM05D004070 ORTHO05D004904 1.7e-248 862.8 682 61.3
Sopen06g016660 Solanum pennellii HOM05D004070 ORTHO05D004904 1.5e-247 859.8 683 61.6
Manes.10G008700 Manihot esculenta HOM05D004070 ORTHO05D004904 3.3e-247 858.6 676 60.8
SalBow3G2100 Salvia bowleyana HOM05D004070 ORTHO05D004904 1.8e-245 852.8 679 60.1
CAN.G19.7 Capsicum annuum HOM05D004070 ORTHO05D004904 3.1e-245 852.0 677 61.4
Prupe.2G256300 Prunus persica HOM05D004070 ORTHO05D004904 3.1e-245 852.0 685 60.7
Thecc.10G010900 Theobroma cacao HOM05D004070 ORTHO05D004904 1.5e-244 849.7 675 60.9
Migut.F00635 Erythranthe guttata HOM05D004070 ORTHO05D004904 2.0e-244 849.4 677 60.7
RcHm_v2.0_Chr1g0370971 Rosa chinensis HOM05D004070 ORTHO05D004904 2.0e-244 849.4 683 61.3
SalBow3G0248 Salvia bowleyana HOM05D004070 ORTHO05D004904 5.8e-244 847.8 679 59.6
Ciclev10030777m.g Citrus clementina HOM05D004070 ORTHO05D004904 7.6e-244 847.4 683 60.6
DCAR_011846 Daucus carota HOM05D004070 ORTHO05D004904 9.9e-244 847.0 681 60.6
TWI73G0078 Tripterygium wilfordii HOM05D004070 ORTHO05D004904 1.9e-242 842.8 688 59.3
CiPaw.02G195800 Carya illinoinensis HOM05D004070 ORTHO05D004904 5.4e-242 841.3 668 60.6
MD01G1158000 Malus domestica HOM05D004070 ORTHO05D004904 3.5e-241 838.6 677 60.9
FvH4_7g25120 Fragaria vesca HOM05D004070 ORTHO05D004904 3.0e-240 835.5 671 62.1
Gorai.012G079500 Gossypium raimondii HOM05D004070 ORTHO05D004904 6.6e-240 834.3 692 59.2
QL08p063798 Quercus lobata HOM05D004070 ORTHO05D004904 1.5e-239 833.2 676 60.4
CiPaw.12G018900 Carya illinoinensis HOM05D004070 ORTHO05D004904 5.6e-239 831.2 670 60.0
MD07G1226700 Malus domestica HOM05D004070 ORTHO05D004904 1.2e-238 830.1 683 59.6
AUR62012305 Chenopodium quinoa HOM05D004070 ORTHO05D004904 2.8e-238 828.9 674 57.4
AUR62022946 Chenopodium quinoa HOM05D004070 ORTHO05D004904 4.7e-238 828.2 675 57.3
Glyma.18G024300 Glycine max HOM05D004070 ORTHO05D004904 6.2e-238 827.8 669 61.4
Aqoxy1G01303 Aquilegia oxysepala HOM05D004070 ORTHO05D004904 1.1e-237 827.0 693 58.9
EL10Ac2g04896 Beta vulgaris HOM05D004070 ORTHO05D004904 3.1e-237 825.5 675 58.4
SGA_v2.0_scaffold60G20962 Striga asiatica HOM05D004070 ORTHO05D004904 3.1e-237 825.5 674 59.8
TPR.G27736 Trifolium pratense HOM05D004070 ORTHO05D004904 8.9e-237 823.9 675 61.2
Glyma.11G232700 Glycine max HOM05D004070 ORTHO05D004904 1.5e-236 823.2 666 60.7
Eucgr.J00174 Eucalyptus grandis HOM05D004070 ORTHO05D004904 4.4e-236 821.6 703 58.3
FAN03G3092 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.7e-235 819.7 685 61.5
Gohir.A10G238300 Gossypium hirsutum HOM05D004070 ORTHO05D004904 1.9e-234 816.2 677 59.8
Lj6g0014816 Lotus japonicus HOM05D004070 ORTHO05D004904 4.6e-233 811.6 684 59.6
Atru.chr12.102 Acer truncatum HOM05D004070 ORTHO05D004904 1.7e-232 809.7 655 60.3
Potri.010G184300 Populus trichocarpa HOM05D004070 ORTHO05D004904 1.7e-232 809.7 689 59.1
Gorai.011G290600 Gossypium raimondii HOM05D004070 ORTHO05D004904 5.1e-232 808.1 677 59.4
PSO349G0044 Papaver somniferum HOM05D004070 ORTHO05D004904 5.1e-232 808.1 693 57.9
PSO765G0033 Papaver somniferum HOM05D004070 ORTHO05D004904 8.7e-232 807.4 693 58.0
CANSAT56G1738 Cannabis sativa HOM05D004070 ORTHO05D004904 1.1e-231 807.0 668 58.2
FAN06G4674 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.9e-231 806.2 711 58.5
FAN01G1500 Fragaria x ananassa HOM05D004070 ORTHO05D004904 4.3e-231 805.1 704 59.2
Medtr3g071610 Medicago truncatula HOM05D004070 ORTHO05D004904 4.3e-231 805.1 673 59.6
Gohir.D10G250200 Gossypium hirsutum HOM05D004070 ORTHO05D004904 1.6e-230 803.1 677 58.9
Phvul.001G245900 Phaseolus vulgaris HOM05D004070 ORTHO05D004904 3.6e-230 802.0 698 57.3
Psat5g130680 Pisum sativum HOM05D004070 ORTHO05D004904 1.8e-229 799.7 682 58.5
Lalb_Chr08g0231511 Lupinus albus HOM05D004070 ORTHO05D004904 1.3e-227 793.5 674 57.7
Haze_17281 Corylus avellana HOM05D004070 ORTHO05D004904 1.7e-227 793.1 674 58.8
Migut.F01473 Erythranthe guttata HOM05D004070 ORTHO05D004904 8.4e-227 790.8 677 58.5
Ca_15154_v3 Cicer arietinum L. HOM05D004070 ORTHO05D004904 2.4e-226 789.3 682 57.9
PGR044G0681 Punica granatum HOM05D004070 ORTHO05D004904 5.4e-226 788.1 669 57.4
Glyma.14G056600 Glycine max HOM05D004070 ORTHO05D004904 1.2e-225 786.9 678 58.1
VMungo1383G0354 Vigna mungo HOM05D004070 ORTHO05D004904 1.6e-225 786.6 671 58.1
Glyma.14G056500 Glycine max HOM05D004070 ORTHO05D004904 2.7e-225 785.8 679 57.6
Glyma.02G262300 Glycine max HOM05D004070 ORTHO05D004904 1.0e-224 783.9 687 56.5
VMungo0647G1128 Vigna mungo HOM05D004070 ORTHO05D004904 7.3e-223 777.7 686 56.7
Gohir.A05G332000 Gossypium hirsutum HOM05D004070 ORTHO05D004904 3.1e-221 772.3 631 59.9
Haze_17272 Corylus avellana HOM05D004070 ORTHO05D004904 1.2e-220 770.4 674 57.6
Sed0002479 Sechium edule HOM05D004070 ORTHO05D004904 1.5e-220 770.0 683 55.2
GSVIVG01032751001 Vitis vinifera HOM05D004070 ORTHO05D004904 5.8e-220 768.1 594 63.6
CARHR207790 Cardamine hirsuta HOM05D004070 ORTHO05D004904 9.9e-220 767.3 680 55.0
Cc02_g06030 Coffea canephora HOM05D004070 ORTHO05D004904 2.2e-219 766.1 588 62.4
ATR0174G011 Amborella trichopoda HOM05D004070 ORTHO05D004904 2.1e-217 759.6 696 53.9
Carub.0006s0436 Capsella rubella HOM05D004070 ORTHO05D004904 4.6e-217 758.4 683 54.0
Sp6g37380 Schrenkiella parvula HOM05D004070 ORTHO05D004904 3.3e-215 752.3 682 53.1
Duzib106G0498 Durio zibethinus HOM05D004070 ORTHO05D004904 5.6e-215 751.5 682 55.7
Ciclev10031026m.g Citrus clementina HOM05D004070 ORTHO05D004904 1.6e-214 750.0 622 59.2
Nn2g10988 Nelumbo nucifera HOM05D004070 ORTHO05D004904 2.8e-214 749.2 688 55.5
AT5G05460 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 4.8e-214 748.4 685 54.2
AL6G15350 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 2.4e-213 746.1 683 53.3
Thhalv10012879m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 6.9e-213 744.6 677 52.4
CsaV3_5G010510 Cucumis sativus L. HOM05D004070 ORTHO05D004904 4.5e-212 741.9 692 51.9
ClCG07G004560 Citrullus lanatus HOM05D004070 ORTHO05D004904 5.8e-212 741.5 690 53.2
Sabra10G0141500 Salix brachista HOM05D004070 ORTHO05D004904 1.7e-211 740.0 854 48.2
BcaB01g05761 Brassica carinata HOM05D004070 ORTHO05D004904 1.9e-210 736.5 678 53.2
A03p02310 Brassica napus HOM05D004070 ORTHO05D004904 2.7e-209 732.6 683 52.9
Sp3g09370 Schrenkiella parvula HOM05D004070 ORTHO05D004904 2.7e-209 732.6 685 53.1
BraA03t09594Z Brassica rapa HOM05D004070 ORTHO05D004904 6.0e-209 731.5 681 53.2
CARHR085620 Cardamine hirsuta HOM05D004070 ORTHO05D004904 7.9e-209 731.1 685 53.0
Carub.0003s1033 Capsella rubella HOM05D004070 ORTHO05D004904 2.3e-208 729.6 685 52.8
Thhalv10020200m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 1.5e-207 726.9 687 53.0
C03p02630 Brassica napus HOM05D004070 ORTHO05D004904 1.6e-206 723.4 683 52.3
BcaB01g05950 Brassica carinata HOM05D004070 ORTHO05D004904 2.1e-206 723.0 683 52.3
BolC3t12817H Brassica oleracea HOM05D004070 ORTHO05D004904 2.1e-206 723.0 683 52.3
CSS0045603 Camellia sinensis var. sinensis HOM05D004070 ORTHO05D004904 6.2e-206 721.5 529 65.4
Aa31LG3G4060 Aethionema arabicum HOM05D004070 ORTHO05D004904 4.1e-205 718.8 685 52.4
Aa31LG11G6530 Aethionema arabicum HOM05D004070 ORTHO05D004904 5.3e-205 718.4 683 52.4
BcaB04g21158 Brassica carinata HOM05D004070 ORTHO05D004904 6.9e-205 718.0 687 52.3
THA.LOC104816686 Tarenaya hassleriana HOM05D004070 ORTHO05D004904 5.8e-204 714.9 684 52.6
CsaV3_5G010500 Cucumis sativus L. HOM05D004070 ORTHO05D004904 1.0e-203 714.1 683 52.4
ClCG07G004550 Citrullus lanatus HOM05D004070 ORTHO05D004904 1.3e-203 713.8 680 52.9
PGR142G0892 Punica granatum HOM05D004070 ORTHO05D004904 2.2e-203 713.0 691 54.4
AT3G11040 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 1.9e-202 709.9 686 51.0
Gohir.D04G070700 Gossypium hirsutum HOM05D004070 ORTHO05D004904 3.2e-202 709.1 692 52.7
AL3G22590 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 1.2e-201 707.2 685 51.2
BolC1t05338H Brassica oleracea HOM05D004070 ORTHO05D004904 1.5e-199 700.3 702 50.4
Ah.16g103890 Amaranthus hybridus HOM05D004070 ORTHO05D004904 4.3e-199 698.7 670 53.9
arahy.Tifrunner.gnm1.ann1.PDR9Z8 Arachis hypogaea HOM05D004070 ORTHO05D004904 7.7e-196 688.0 718 50.7
FAN10G1680 Fragaria x ananassa HOM05D004070 ORTHO05D004904 5.0e-195 685.3 662 55.4
arahy.Tifrunner.gnm1.ann1.DADU25 Arachis hypogaea HOM05D004070 ORTHO05D004904 8.8e-192 674.5 726 50.0
Os05g0346500 Oryza sativa ssp. japonica HOM05D004070 ORTHO05D004904 2.2e-190 669.8 681 49.9
CANSAT56G2024 Cannabis sativa HOM05D004070 ORTHO05D004904 5.3e-189 665.2 678 50.9
arahy.Tifrunner.gnm1.ann1.T4ULTV Arachis hypogaea HOM05D004070 ORTHO05D004904 5.9e-188 661.8 670 51.3
BcaC09g48150 Brassica carinata HOM05D004070 ORTHO05D004904 1.0e-187 661.0 585 55.4
SEGI_36115 Sequoiadendron giganteum HOM05D004070 ORTHO05D004904 1.4e-186 657.1 740 46.8
CDE06G0669 Ceratophyllum demersum HOM05D004070 ORTHO05D004904 2.5e-186 656.4 641 50.9
MELO3C018386.2 Cucumis melo HOM05D004070 ORTHO05D004904 1.4e-184 650.6 692 48.4
arahy.Tifrunner.gnm1.ann1.L3EDXB Arachis hypogaea HOM05D004070 ORTHO05D004904 5.7e-183 645.2 670 50.6
unitig_32.g11775 Utricularia gibba HOM05D004070 ORTHO05D004904 2.5e-178 629.8 684 48.4
Sc11g0005320 Simmondsia chinensis HOM05D004070 ORTHO05D004904 9.4e-178 627.9 525 57.5
MELO3C018385.2 Cucumis melo HOM05D004070 ORTHO05D004904 3.3e-175 619.4 695 47.9
AL467U10010 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 1.3e-174 617.5 688 46.7
Manes.10G008500 Manihot esculenta HOM05D004070 ORTHO05D004904 1.0e-171 607.8 568 53.7
HPP92_006774 Vanilla planifolia HOM05D004070 ORTHO05D004904 3.6e-169 599.4 676 47.2
COL.COLO4_25787 Corchorus olitorius HOM05D004070 ORTHO05D004904 1.3e-155 554.3 675 45.6
Zm00001eb347620 Zea mays HOM05D004070 ORTHO05D004904 4.6e-140 502.7 538 48.7
BcaC09g48154 Brassica carinata HOM05D004070 ORTHO05D004904 5.8e-127 459.1 333 63.1
SMO351G0021 Selaginella moellendorffii HOM05D004070 ORTHO05D004904 3.1e-120 436.8 426 49.3
Cpa.g.sc19.130 Carica papaya HOM05D004070 ORTHO05D004904 1.5e-114 417.9 390 53.3
PSO478G2175 Papaver somniferum HOM05D004070 ORTHO05D004904 9.6e-114 415.2 293 66.2
SGA_v2.0_scaffold395G50725 Striga asiatica HOM05D004070 ORTHO05D004904 5.8e-111 406.0 395 51.6
Dinv21779 Davidia involucrata HOM05D004070 ORTHO05D004904 1.0e-99 368.6 214 79.0
BraA01t04204Z Brassica rapa HOM05D004070 ORTHO05D004904 6.2e-97 359.4 455 43.5
Glyma.02G262251 Glycine max HOM05D004070 ORTHO05D004904 1.4e-96 358.2 405 48.1
CBR_g6382 Chara braunii HOM05D004070 ORTHO05D004904 8.4e-94 349.0 413 42.1
Pp3c4_19160 Physcomitrium patens HOM05D004070 ORTHO05D004904 7.4e-90 335.9 573 34.6
AagrBONN_evm.TU.Sc2ySwM_362.570 Anthoceros agrestis HOM05D004070 ORTHO05D004904 8.4e-86 322.4 539 33.8
PGSC0003DMG400023947 Solanum tuberosum HOM05D004070 ORTHO05D004904 1.9e-82 311.2 326 50.0
Mapoly0073s0082 Marchantia polymorpha HOM05D004070 ORTHO05D004904 6.9e-80 302.8 578 32.2
Cre13.g582250 Chlamydomonas reinhardtii HOM05D004070 ORTHO05D004904 2.0e-79 301.2 313 47.0
Glyma.02G262200 Glycine max HOM05D004070 ORTHO05D004904 5.5e-53 213.4 164 61.6
SGA_v2.0_scaffold395G50724 Striga asiatica HOM05D004070 ORTHO05D004904 8.0e-52 209.5 136 69.9
BraA01t04205Z Brassica rapa HOM05D004070 ORTHO05D004904 2.0e-50 204.9 164 58.5
Potri.008G073001 Populus trichocarpa HOM05D004070 ORTHO05D004904 1.5e-45 188.7 212 47.6
Cpa.g.sc19.132 Carica papaya HOM05D004070 ORTHO05D004904 1.2e-44 185.7 246 43.5
MELO3C034437.2 Cucumis melo HOM05D004070 ORTHO05D004904 4.0e-43 180.6 128 62.5
AT3G61010 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 5.4e-40 170.2 387 31.3
BcaB07g33013 Brassica carinata HOM05D004070 ORTHO05D004904 1.7e-38 165.2 225 42.2
SGA_v2.0_scaffold395G50723 Striga asiatica HOM05D004070 ORTHO05D004904 5.0e-38 163.7 124 60.5
Sopen01g021300 Solanum pennellii HOM05D004070 ORTHO05D004904 5.6e-37 160.2 209 43.5
Atru.chr12.101 Acer truncatum HOM05D004070 ORTHO05D004904 9.2e-32 142.9 177 42.9
arahy.Tifrunner.gnm1.ann1.0XTL3F Arachis hypogaea HOM05D004070 ORTHO05D004904 5.0e-30 137.1 133 51.9
BcaB04g21152 Brassica carinata HOM05D004070 ORTHO05D004904 4.3e-29 134.0 100 63.0
BcaB04g21155 Brassica carinata HOM05D004070 ORTHO05D004904 4.3e-29 134.0 100 63.0
BcaB04g21156 Brassica carinata HOM05D004070 ORTHO05D004904 4.3e-29 134.0 100 63.0
BraA01t04203Z Brassica rapa HOM05D000053 ORTHO05D000035 3.2e-24 117.9 244 32.4
Dinv21778 Davidia involucrata HOM05D004070 ORTHO05D004904 4.1e-24 117.5 271 29.5
BolC1t05337H Brassica oleracea HOM05D000053 ORTHO05D000035 1.4e-19 102.4 191 31.9
BcaB03g16457 Brassica carinata HOM05D004070 ORTHO05D032257 8.3e-17 93.2 59 69.5
arahy.Tifrunner.gnm1.ann1.JYP4ZT Arachis hypogaea HOM05D004070 ORTHO05D004904 4.6e-15 87.4 144 35.4
Potri.008G072901 Populus trichocarpa HOM05D004070 ORTHO05D004904 1.7e-14 85.5 113 42.5
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 4.7e-12 77.4 43 74.4
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 4.7e-12 77.4 43 74.4
arahy.Tifrunner.gnm1.ann1.N2R911 Arachis hypogaea HOM05D004070 ORTHO05D004904 1.4e-11 75.9 76 50.0
Sabra08G0054200 Salix brachista HOM05D004070 ORTHO05D004904 2.3e-11 75.1 199 28.6
BcaC06g31359 Brassica carinata HOM05D004070 ORTHO05D000295 3.5e-07 61.2 67 49.3


User provided reference genes

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