Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA238G1924 Erigeron canadensis HOM05D004562 ORTHO05D005435 0.0e+00 2129.0 1086 100.0
HanXRQChr09g0268071 Helianthus annuus HOM05D004562 ORTHO05D005435 0.0e+00 1513.8 1086 72.9
HanXRQChr02g0032401 Helianthus annuus HOM05D004562 ORTHO05D005435 0.0e+00 1431.8 1086 70.4
Lsat_1_v5_gn_2_14940 Lactuca sativa HOM05D004562 ORTHO05D005435 0.0e+00 1337.4 1107 66.8
Dinv02642 Davidia involucrata HOM05D004562 ORTHO05D005435 0.0e+00 1085.5 1151 53.6
QL10p030682 Quercus lobata HOM05D004562 ORTHO05D005435 4.1e-276 955.3 1125 49.9
Cfa019638 Carpinus fangiana HOM05D004562 ORTHO05D005435 2.9e-274 949.1 1139 49.2
Rhsim12G0137700 Rhododendron simsii HOM05D004562 ORTHO05D005435 1.4e-273 946.8 1154 48.8
CAN.G843.49 Capsicum annuum HOM05D004562 ORTHO05D005435 4.8e-269 931.8 1113 49.4
FvH4_5g17490 Fragaria vesca HOM05D004562 ORTHO05D005435 5.9e-267 924.9 1124 48.8
FAN18G3714 Fragaria x ananassa HOM05D004562 ORTHO05D005435 5.9e-267 924.9 1124 48.8
Oeu026264.3 Olea europaea HOM05D004562 ORTHO05D005435 2.2e-266 922.9 1179 47.1
PGR044G1246 Punica granatum HOM05D004562 ORTHO05D005435 5.0e-266 921.8 1149 47.3
Cc04_g06100 Coffea canephora HOM05D004562 ORTHO05D005435 1.2e-264 917.1 1094 50.7
COL.COLO4_28896 Corchorus olitorius HOM05D004562 ORTHO05D005435 2.7e-264 916.0 1142 48.4
Gorai.008G290800 Gossypium raimondii HOM05D004562 ORTHO05D005435 2.7e-264 916.0 1138 47.8
FAN13G2245 Fragaria x ananassa HOM05D004562 ORTHO05D005435 3.9e-263 912.1 1136 48.0
Peaxi162Scf00314g00332 Petunia axillaris HOM05D004562 ORTHO05D005435 6.7e-263 911.4 1126 47.3
MBI13_g01852_MAGBIO Magnolia biondii HOM05D004562 ORTHO05D005435 1.1e-262 910.6 1156 46.9
vmacro16407 Vaccinium macrocarpon HOM05D004562 ORTHO05D005435 1.5e-262 910.2 1152 47.5
PGSC0003DMG400005676 Solanum tuberosum HOM05D004562 ORTHO05D005435 2.0e-262 909.8 1119 47.9
FAN08G1802 Fragaria x ananassa HOM05D004562 ORTHO05D005435 3.3e-262 909.1 1137 48.2
RcHm_v2.0_Chr7g0178201 Rosa chinensis HOM05D004562 ORTHO05D005435 1.3e-261 907.1 1131 47.7
TWI60G0891 Tripterygium wilfordii HOM05D004562 ORTHO05D005435 1.7e-261 906.7 1140 47.9
Actinidia35140 Actinidia chinensis HOM05D004562 ORTHO05D005435 4.8e-261 905.2 1144 47.0
Ciclev10007290m.g Citrus clementina HOM05D004562 ORTHO05D005435 1.1e-260 904.0 1145 47.0
FAN04G0449 Fragaria x ananassa HOM05D004562 ORTHO05D005435 1.1e-260 904.0 1134 47.3
MD14G1237500 Malus domestica HOM05D004562 ORTHO05D005435 1.8e-260 903.3 1116 47.4
CANSAT80G2549 Cannabis sativa HOM05D004562 ORTHO05D005435 2.0e-259 899.8 1142 46.9
MD06G1228300 Malus domestica HOM05D004562 ORTHO05D005435 3.5e-259 899.0 1129 47.5
GSVIVG01008458001 Vitis vinifera HOM05D004562 ORTHO05D005435 3.5e-259 899.0 1102 47.8
Sed0003970 Sechium edule HOM05D004562 ORTHO05D005435 7.7e-259 897.9 1127 47.6
Sopen03g037570 Solanum pennellii HOM05D004562 ORTHO05D005435 1.3e-258 897.1 1113 48.4
Solyc03g118620.3 Solanum lycopersicum HOM05D004562 ORTHO05D005435 4.2e-257 892.1 1113 48.0
MSTRG.9309 Avicennia marina HOM05D004562 ORTHO05D005435 2.1e-256 889.8 1150 47.0
Eucgr.K02277 Eucalyptus grandis HOM05D004562 ORTHO05D005435 2.8e-253 879.4 1145 47.2
Glyma.08G055400 Glycine max HOM05D004562 ORTHO05D005435 2.4e-252 876.3 1119 47.1
Ca_17180_v3 Cicer arietinum L. HOM05D004562 ORTHO05D005435 5.3e-252 875.2 1114 47.1
Nn4g24285 Nelumbo nucifera HOM05D004562 ORTHO05D005435 9.1e-252 874.4 1126 46.1
Lalb_Chr09g0330331 Lupinus albus HOM05D004562 ORTHO05D005435 5.0e-250 868.6 1121 47.0
Potri.015G036300 Populus trichocarpa HOM05D004562 ORTHO05D005435 1.5e-249 867.1 1114 46.9
Medtr8g107440 Medicago truncatula HOM05D004562 ORTHO05D005435 9.4e-249 864.4 1125 46.3
Lalb_Chr05g0221581 Lupinus albus HOM05D004562 ORTHO05D005435 1.6e-248 863.6 1117 45.9
CsaV3_1G004480 Cucumis sativus L. HOM05D004562 ORTHO05D005435 2.7e-248 862.8 1133 45.7
Sed0022497 Sechium edule HOM05D004562 ORTHO05D005435 2.7e-248 862.8 1133 45.4
Sabra15G0029800 Salix brachista HOM05D004562 ORTHO05D005435 8.0e-248 861.3 1117 46.0
Glyma.05G247000 Glycine max HOM05D004562 ORTHO05D005435 1.4e-247 860.5 1113 45.8
Manes.06G004700 Manihot esculenta HOM05D004562 ORTHO05D005435 1.8e-247 860.1 1092 46.7
Psat7g001240 Pisum sativum HOM05D004562 ORTHO05D005435 1.5e-246 857.1 1114 46.1
Aqoxy3G00029 Aquilegia oxysepala HOM05D004562 ORTHO05D005435 1.1e-244 850.9 1146 45.0
arahy.Tifrunner.gnm1.ann1.WQ60SD Arachis hypogaea HOM05D004562 ORTHO05D005435 7.0e-244 848.2 1100 46.4
Lj4g0011431 Lotus japonicus HOM05D004562 ORTHO05D005435 4.2e-241 839.0 1105 45.5
AUR62029906 Chenopodium quinoa HOM05D004562 ORTHO05D005435 5.5e-241 838.6 1118 45.5
EL10Ac8g19501 Beta vulgaris HOM05D004562 ORTHO05D005435 7.5e-238 828.2 1115 44.8
Nn3g18314 Nelumbo nucifera HOM05D004562 ORTHO05D005435 7.5e-238 828.2 1194 43.6
AUR62033795 Chenopodium quinoa HOM05D004562 ORTHO05D005435 9.8e-238 827.8 1116 45.1
DCAR_011617 Daucus carota HOM05D004562 ORTHO05D005435 2.8e-237 826.2 1108 46.2
THA.LOC104820345 Tarenaya hassleriana HOM05D004562 ORTHO05D005435 8.3e-237 824.7 1116 44.5
TPR.G1465 Trifolium pratense HOM05D004562 ORTHO05D005435 1.1e-236 824.3 1101 45.8
PSO478G3379 Papaver somniferum HOM05D004562 ORTHO05D005435 1.2e-235 820.8 1145 44.3
Haze_18884 Corylus avellana HOM05D004562 ORTHO05D005435 4.5e-235 818.9 1134 44.9
MELO3C017375.2 Cucumis melo HOM05D004562 ORTHO05D005435 1.3e-234 817.4 1040 46.9
Ah.14g085940 Amaranthus hybridus HOM05D004562 ORTHO05D005435 3.3e-233 812.8 1124 44.7
Lj5A159T41 Lonicera japonica HOM05D004562 ORTHO05D005435 1.6e-232 810.4 1170 44.6
arahy.Tifrunner.gnm1.ann1.G227WQ Arachis hypogaea HOM05D004562 ORTHO05D005435 2.8e-232 809.7 1099 45.0
ClCG06G014190 Citrullus lanatus HOM05D004562 ORTHO05D005435 3.6e-232 809.3 1133 44.2
Gohir.D12G270500 Gossypium hirsutum HOM05D004562 ORTHO05D005435 6.1e-232 808.5 1003 48.4
Sp3g16040 Schrenkiella parvula HOM05D004562 ORTHO05D005435 4.4e-230 802.4 1103 44.0
ATR0753G019 Amborella trichopoda HOM05D004562 ORTHO05D005435 1.7e-229 800.4 1138 42.4
Thhalv10019973m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 1.1e-228 797.7 1105 43.8
Carub.0003s1765 Capsella rubella HOM05D004562 ORTHO05D005435 3.2e-228 796.2 1101 44.2
AL3G31090 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 9.2e-228 794.7 1114 42.7
PSO017G6436 Papaver somniferum HOM05D004562 ORTHO05D005435 9.2e-228 794.7 1145 44.5
BcaC05g28736 Brassica carinata HOM05D004562 ORTHO05D005435 2.0e-227 793.5 1102 43.4
BolC5t33574H Brassica oleracea HOM05D004562 ORTHO05D005435 2.0e-227 793.5 1102 43.4
CARHR038150 Cardamine hirsuta HOM05D004562 ORTHO05D005435 4.6e-227 792.3 1109 42.7
AT3G17920 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 1.0e-226 791.2 1102 43.2
BraA05t22020Z Brassica rapa HOM05D004562 ORTHO05D005435 1.7e-226 790.4 1100 43.6
BcaB06g25854 Brassica carinata HOM05D004562 ORTHO05D005435 2.3e-226 790.0 1109 43.1
Prupe.5G234800 Prunus persica HOM05D004562 ORTHO05D005435 2.3e-226 790.0 1013 47.8
A05p31880 Brassica napus HOM05D004562 ORTHO05D005435 1.5e-225 787.3 1102 43.6
C05p48370 Brassica napus HOM05D004562 ORTHO05D005435 4.3e-225 785.8 1102 43.1
Thecc.03G058700 Theobroma cacao HOM05D004562 ORTHO05D005435 9.5e-225 784.6 1149 43.7
VMungo0251G1597 Vigna mungo HOM05D004562 ORTHO05D005435 1.1e-223 781.2 1136 42.4
Sc12g0007950 Simmondsia chinensis HOM05D004562 ORTHO05D005435 2.9e-221 773.1 1092 44.8
Gohir.A12G270000 Gossypium hirsutum HOM05D004562 ORTHO05D005435 3.2e-220 769.6 966 48.4
BcaB07g33749 Brassica carinata HOM05D004562 ORTHO05D005435 5.4e-220 768.8 1101 44.2
AL1G55180 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 9.2e-220 768.1 1125 43.3
A06p04420 Brassica napus HOM05D004562 ORTHO05D005435 1.0e-218 764.6 1102 43.1
Carub.0001s3765 Capsella rubella HOM05D004562 ORTHO05D005435 1.7e-218 763.8 1118 42.8
Sp1g35480 Schrenkiella parvula HOM05D004562 ORTHO05D005435 2.5e-217 760.0 1093 43.6
Aa31LG10G5260 Aethionema arabicum HOM05D004562 ORTHO05D005435 4.3e-217 759.2 1158 42.4
Phvul.002G331100 Phaseolus vulgaris HOM05D004562 ORTHO05D005435 4.3e-217 759.2 986 46.2
C06p03060 Brassica napus HOM05D004562 ORTHO05D005435 4.7e-216 755.7 1114 42.7
BcaC08g43044 Brassica carinata HOM05D004562 ORTHO05D005435 1.1e-215 754.6 1114 42.7
CiPaw.15G144500 Carya illinoinensis HOM05D004562 ORTHO05D005435 5.2e-215 752.3 947 48.2
BolC6t35426H Brassica oleracea HOM05D004562 ORTHO05D005435 5.8e-214 748.8 1114 42.5
Aa31LG8G4790 Aethionema arabicum HOM05D004562 ORTHO05D005435 3.2e-212 743.0 1104 41.4
HPP92_016742 Vanilla planifolia HOM05D004562 ORTHO05D005435 3.2e-212 743.0 1149 40.7
Thhalv10011201m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 2.1e-211 740.3 1126 41.9
BraA06t23647Z Brassica rapa HOM05D004562 ORTHO05D005435 8.6e-210 734.9 1145 41.0
Duzib205G1225 Durio zibethinus HOM05D004562 ORTHO05D005435 1.9e-209 733.8 1149 41.3
AT1G48540 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 2.5e-209 733.4 1048 44.7
Zm00001eb008950 Zea mays HOM05D004562 ORTHO05D005435 3.9e-202 709.5 1118 40.3
CiPaw.16G096100 Carya illinoinensis HOM05D004562 ORTHO05D005435 6.9e-199 698.7 879 49.0
CSS0019251 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 5.8e-198 695.7 638 59.7
Migut.D01318 Erythranthe guttata HOM05D004562 ORTHO05D005435 1.9e-196 690.6 783 50.8
TAR374G0462 Trochodendron aralioides HOM05D004562 ORTHO05D005435 1.5e-193 681.0 648 57.6
SGA_v2.0_scaffold172G39021 Striga asiatica HOM05D004562 ORTHO05D005435 5.3e-191 672.5 806 49.3
Os03g0221800 Oryza sativa ssp. japonica HOM05D004562 ORTHO05D005435 5.1e-186 656.0 1127 38.0
Gohir.D02G121900 Gossypium hirsutum HOM05D004562 ORTHO05D005435 8.4e-181 638.6 700 52.0
Gorai.005G132200 Gossypium raimondii HOM05D004562 ORTHO05D005435 5.5e-180 636.0 705 52.1
SalBow1G2489 Salvia bowleyana HOM05D004562 ORTHO05D005435 4.6e-179 632.9 693 52.5
CARHR093250 Cardamine hirsuta HOM05D004562 ORTHO05D005435 3.3e-177 626.7 838 45.6
Nitab4.5_0010397g0020 Nicotiana tabacum HOM05D004562 ORTHO05D005435 2.1e-176 624.0 450 70.0
Nitab4.5_0001264g0030 Nicotiana tabacum HOM05D004562 ORTHO05D005435 6.9e-175 619.0 569 58.7
Potri.012G045300 Populus trichocarpa HOM05D004562 ORTHO05D005435 2.0e-174 617.5 486 66.3
Hund22308 Selenicereus undatus HOM05D004562 ORTHO05D005435 8.4e-173 612.1 929 42.5
Actinidia18882 Actinidia chinensis HOM05D004562 ORTHO05D005435 1.8e-167 594.3 847 43.8
Atru.chr9.1669 Acer truncatum HOM05D004562 ORTHO05D005435 2.2e-165 587.4 894 43.0
CDE05G0309 Ceratophyllum demersum HOM05D004562 ORTHO05D005435 6.1e-163 579.3 1127 36.3
Manes.14G172200 Manihot esculenta HOM05D004562 ORTHO05D005435 2.4e-159 567.4 865 40.6
unitig_46.g18720 Utricularia gibba HOM05D004562 ORTHO05D005435 2.4e-159 567.4 652 51.4
SEGI_15130 Sequoiadendron giganteum HOM05D004562 ORTHO05D005435 1.4e-151 541.6 682 47.5
Cpa.g.sc3.379 Carica papaya HOM05D004562 ORTHO05D005435 3.5e-142 510.4 638 48.7
Sabra12G0031500 Salix brachista HOM05D004562 ORTHO05D005435 3.5e-134 483.8 955 36.4
Pp3c10_10590 Physcomitrium patens HOM05D004562 ORTHO05D005435 3.0e-122 444.1 781 38.8
CSS0009282 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 4.0e-122 443.7 277 81.9
CSS0039239 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 4.0e-122 443.7 277 81.9
Mapoly0118s0042 Marchantia polymorpha HOM05D004562 ORTHO05D005435 2.7e-118 431.0 793 36.7
Hma1.2p1_0163F.1_g072990 Hydrangea macrophylla HOM05D004562 ORTHO05D005435 1.7e-104 385.2 720 37.2
AagrBONN_evm.TU.Sc2ySwM_228.5527 Anthoceros agrestis HOM05D004562 ORTHO05D005435 2.1e-99 368.2 337 54.0
Gohir.A03G092980 Gossypium hirsutum HOM05D004562 ORTHO05D005435 1.9e-84 318.5 215 74.9
CSS0012259 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 1.7e-72 278.9 601 35.8
CSS0042944 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 2.9e-72 278.1 601 35.6
Gohir.A03G092940 Gossypium hirsutum HOM05D004562 ORTHO05D005435 1.4e-71 275.8 425 41.6
CBR_g38780 Chara braunii HOM05D004562 ORTHO05D005435 4.3e-60 237.7 230 51.7
SHI19076 Sapria himalayana HOM05D004562 ORTHO05D005435 6.9e-50 203.8 151 68.9
SEGI_31258 Sequoiadendron giganteum HOM05D004562 ORTHO05D005435 5.1e-45 187.6 791 25.7
AUR62044432 Chenopodium quinoa HOM05D004562 ORTHO05D005435 6.3e-43 180.6 641 27.1
SHI19074 Sapria himalayana HOM05D004562 ORTHO05D005435 1.4e-39 169.5 132 63.6
CAN.G59.9 Capsicum annuum HOM05D004562 ORTHO05D005435 1.5e-36 159.5 178 52.8
CAN.G1490.14 Capsicum annuum HOM05D004562 ORTHO05D005435 7.7e-33 147.1 102 73.5
Duzib084G0184 Durio zibethinus HOM05D004562 ORTHO05D005435 1.0e-32 146.7 587 28.6
SHI19075 Sapria himalayana HOM05D004562 ORTHO05D005435 1.2e-30 139.8 87 78.2
CAN.G1687.2 Capsicum annuum HOM05D004562 ORTHO05D005435 2.0e-28 132.5 169 48.5
MCO11G516 Micromonas commoda HOM05D004562 ORTHO05D005435 3.8e-24 118.2 378 28.3
TAR374G0732 Trochodendron aralioides HOM05D004562 ORTHO05D005435 1.1e-18 100.1 173 33.5
CAN.G22.26 Capsicum annuum HOM05D001423 ORTHO05D001412 4.5e-17 94.7 67 65.7
Cpa.g.sc3.375 Carica papaya HOM05D000419 ORTHO05D000692 2.4e-10 72.4 80 46.2
AagrBONN_evm.TU.Sc2ySwM_368.1004 Anthoceros agrestis HOM05D016773 ORTHO05D019668 1.2e-09 70.1 201 29.9
Cre16.g679600 Chlamydomonas reinhardtii HOM05D005498 ORTHO05D006719 1.0e-08 67.0 163 33.7
C03p70010 Brassica napus HOM05D004562 ORTHO05D005435 8.6e-08 63.9 113 32.7
Cfa024768 Carpinus fangiana HOM05D005225 ORTHO05D124687 2.5e-07 62.4 149 26.8


User provided reference genes

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