Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA238G1778 Erigeron canadensis HOM05D003805 ORTHO05D004300 1.9e-56 222.2 112 100.0
Lsat_1_v5_gn_2_77320 Lactuca sativa HOM05D003805 ORTHO05D004300 3.6e-34 148.3 117 65.8
Lsat_1_v5_gn_2_77300 Lactuca sativa HOM05D003805 ORTHO05D004300 7.9e-34 147.1 117 63.2
HanXRQChr07g0191651 Helianthus annuus HOM05D003805 ORTHO05D004300 2.3e-33 145.6 112 67.0
ECA238G4264 Erigeron canadensis HOM05D003805 ORTHO05D004300 3.2e-27 125.2 118 55.9
HanXRQChr14g0440581 Helianthus annuus HOM05D003805 ORTHO05D004300 9.4e-27 123.6 117 56.4
Lsat_1_v5_gn_8_64500 Lactuca sativa HOM05D003805 ORTHO05D004300 8.8e-25 117.1 87 66.7
Hma1.2p1_1297F.1_g274110 Hydrangea macrophylla HOM05D003805 ORTHO05D004300 5.5e-19 97.8 116 48.3
CSS0002171 Camellia sinensis var. sinensis HOM05D003805 ORTHO05D004300 3.0e-17 92.0 104 48.1
Lsat_1_v5_gn_9_118581 Lactuca sativa HOM05D003805 ORTHO05D004300 2.0e-16 89.4 69 66.7
SalBow8G4897 Salvia bowleyana HOM05D003805 ORTHO05D004300 3.3e-16 88.6 112 44.6
CAN.G358.54 Capsicum annuum HOM05D003805 ORTHO05D004300 2.2e-15 85.9 103 49.5
DCAR_016030 Daucus carota HOM05D003805 ORTHO05D004300 4.8e-15 84.7 123 48.0
PGSC0003DMG400003519 Solanum tuberosum HOM05D003805 ORTHO05D004300 8.2e-15 84.0 104 50.0
Haze_15065 Corylus avellana HOM05D000625 ORTHO05D010258 1.1e-14 83.6 114 44.7
Lsat_1_v5_gn_2_77360 Lactuca sativa HOM05D003805 ORTHO05D004300 1.4e-14 83.2 102 48.0
Nitab4.5_0012261g0010 Nicotiana tabacum HOM05D003805 ORTHO05D004300 3.1e-14 82.0 103 48.5
Oeu025181.1 Olea europaea HOM05D003805 ORTHO05D004300 3.1e-14 82.0 112 41.1
Oeu035340.1 Olea europaea HOM05D003805 ORTHO05D004300 3.1e-14 82.0 113 44.2
QL06p047086 Quercus lobata HOM05D003805 ORTHO05D004300 5.3e-14 81.3 116 44.0
Nitab4.5_0000178g0280 Nicotiana tabacum HOM05D003805 ORTHO05D004300 1.2e-13 80.1 107 48.6
PGR119G0937 Punica granatum HOM05D003805 ORTHO05D004300 1.6e-13 79.7 113 42.5
Nitab4.5_0000178g0350 Nicotiana tabacum HOM05D003805 ORTHO05D004300 2.7e-13 79.0 106 48.1
Peaxi162Scf00366g00711 Petunia axillaris HOM05D003805 ORTHO05D004300 3.5e-13 78.6 107 47.7
Lalb_Chr09g0322201 Lupinus albus HOM05D003805 ORTHO05D004300 5.9e-13 77.8 113 42.5
Peaxi162Scf00366g00066 Petunia axillaris HOM05D003805 ORTHO05D004300 5.9e-13 77.8 108 48.1
Nitab4.5_0007490g0050 Nicotiana tabacum HOM05D003805 ORTHO05D004300 1.0e-12 77.0 106 47.2
Sopen02g029690 Solanum pennellii HOM05D003805 ORTHO05D004300 1.7e-12 76.3 105 46.7
PGSC0003DMG401003517 Solanum tuberosum HOM05D003805 ORTHO05D004300 1.7e-12 76.3 108 48.1
GSVIVG01018926001 Vitis vinifera HOM05D003805 ORTHO05D004300 1.7e-12 76.3 117 41.9
PGSC0003DMG400003518 Solanum tuberosum HOM05D003805 ORTHO05D004300 2.2e-12 75.9 108 48.1
Solyc02g085005.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 2.9e-12 75.5 103 47.6
Cpa.g.sc6.148 Carica papaya HOM05D003805 ORTHO05D004300 3.8e-12 75.1 131 35.9
Ah.03g141100 Amaranthus hybridus HOM05D003805 ORTHO05D004300 5.0e-12 74.7 128 39.1
TWI09G1369 Tripterygium wilfordii HOM05D003805 ORTHO05D004300 5.0e-12 74.7 115 41.7
Peaxi162Scf00366g00073 Petunia axillaris HOM05D003805 ORTHO05D004300 8.5e-12 73.9 110 44.5
Psat2g157880 Pisum sativum HOM05D003805 ORTHO05D004300 1.1e-11 73.6 119 37.0
Solyc02g085010.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 1.1e-11 73.6 112 46.4
PGSC0003DMG402003517 Solanum tuberosum HOM05D003805 ORTHO05D004300 1.1e-11 73.6 101 48.5
THA.LOC104807465 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 1.9e-11 72.8 118 43.2
THA.LOC104819775 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 1.9e-11 72.8 124 41.9
Migut.H02530 Erythranthe guttata HOM05D003805 ORTHO05D004300 3.2e-11 72.0 115 40.0
Medtr5g020860 Medicago truncatula HOM05D003805 ORTHO05D004300 3.2e-11 72.0 119 38.7
Duzib264G0487 Durio zibethinus HOM05D003805 ORTHO05D004300 7.2e-11 70.9 123 39.0
Lj2g0025508 Lotus japonicus HOM05D003805 ORTHO05D004300 9.4e-11 70.5 115 39.1
Nn5g29663 Nelumbo nucifera HOM05D003805 ORTHO05D004300 9.4e-11 70.5 114 38.6
Sopen02g029700 Solanum pennellii HOM05D003805 ORTHO05D004300 1.2e-10 70.1 108 46.3
Gohir.D12G063500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 2.1e-10 69.3 128 35.2
Gorai.008G066800 Gossypium raimondii HOM05D003805 ORTHO05D004300 2.1e-10 69.3 128 35.2
Gohir.A11G183100 Gossypium hirsutum HOM05D003805 ORTHO05D004300 2.7e-10 68.9 118 38.1
SGA_v2.0_scaffold12G06299 Striga asiatica HOM05D003805 ORTHO05D004300 3.6e-10 68.6 107 42.1
VMungo1215G0776 Vigna mungo HOM05D003805 ORTHO05D004300 3.6e-10 68.6 117 40.2
BcaB01g00567 Brassica carinata HOM05D003805 ORTHO05D004300 4.7e-10 68.2 124 36.3
AUR62004083 Chenopodium quinoa HOM05D000625 ORTHO05D000467 4.7e-10 68.2 62 53.2
Gohir.D11G189500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 4.7e-10 68.2 122 37.7
Aa31LG6G13290 Aethionema arabicum HOM05D003805 ORTHO05D004300 6.1e-10 67.8 112 39.3
Gorai.007G201700 Gossypium raimondii HOM05D003805 ORTHO05D004300 6.1e-10 67.8 122 37.7
Thecc.01G031800 Theobroma cacao HOM05D003805 ORTHO05D004300 6.1e-10 67.8 123 36.6
TPR.G2362 Trifolium pratense HOM05D003805 ORTHO05D004300 8.0e-10 67.4 117 37.6
Gohir.A12G063700 Gossypium hirsutum HOM05D003805 ORTHO05D004300 1.0e-09 67.0 128 34.4
COL.COLO4_22043 Corchorus olitorius HOM05D003805 ORTHO05D004300 1.4e-09 66.6 119 35.3
Lalb_Chr09g0333461 Lupinus albus HOM05D003805 ORTHO05D004300 1.4e-09 66.6 113 43.4
Phvul.002G032400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 1.4e-09 66.6 117 38.5
Glyma.11G071100 Glycine max HOM05D003805 ORTHO05D004300 3.0e-09 65.5 113 38.1
MELO3C007840.2 Cucumis melo HOM05D003805 ORTHO05D004300 4.0e-09 65.1 114 38.6
Thhalv10023197m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 4.0e-09 65.1 69 47.8
THA.LOC104826691 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 4.0e-09 65.1 124 33.1
Lalb_Chr16g0391061 Lupinus albus HOM05D003805 ORTHO05D004300 5.2e-09 64.7 116 40.5
Glyma.01G172100 Glycine max HOM05D003805 ORTHO05D004300 6.8e-09 64.3 113 36.3
Sp1g22390 Schrenkiella parvula HOM05D003805 ORTHO05D004300 6.8e-09 64.3 47 61.7
Sed0017680 Sechium edule HOM05D003805 ORTHO05D004300 6.8e-09 64.3 113 37.2
BcaC07g39558 Brassica carinata HOM05D003805 ORTHO05D004300 8.8e-09 63.9 120 36.7
C08p26110 Brassica napus HOM05D003805 ORTHO05D004300 8.8e-09 63.9 120 36.7
BolC8t50229H Brassica oleracea HOM05D003805 ORTHO05D004300 8.8e-09 63.9 120 36.7
Ca_22293_v3 Cicer arietinum L. HOM05D003805 ORTHO05D004300 8.8e-09 63.9 119 38.7
Aa31LG4G19000 Aethionema arabicum HOM05D003805 ORTHO05D004300 1.2e-08 63.5 123 33.3
AT2G18210 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 1.2e-08 63.5 123 41.5
BcaB02g10024 Brassica carinata HOM05D003805 ORTHO05D004300 1.5e-08 63.2 70 50.0
Thhalv10010834m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 1.5e-08 63.2 120 36.7
Lj4g0028115 Lotus japonicus HOM05D003805 ORTHO05D004300 1.5e-08 63.2 55 58.2
Medtr8g077145 Medicago truncatula HOM05D003805 ORTHO05D004300 2.0e-08 62.8 119 37.8
Psat4g094680 Pisum sativum HOM05D003805 ORTHO05D004300 2.0e-08 62.8 117 36.8
Actinidia19196 Actinidia chinensis HOM05D002962 ORTHO05D003280 2.6e-08 62.4 101 40.6
AL3G51440 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 3.4e-08 62.0 119 41.2
Duzib147G0407 Durio zibethinus HOM05D003805 ORTHO05D004300 3.4e-08 62.0 121 35.5
Manes.01G137700 Manihot esculenta HOM05D003805 ORTHO05D004300 3.4e-08 62.0 50 58.0
Sc16g0002610 Simmondsia chinensis HOM05D003805 ORTHO05D004300 3.4e-08 62.0 120 37.5
TPR.G24112 Trifolium pratense HOM05D003805 ORTHO05D004300 3.4e-08 62.0 118 38.1
Carub.0003s3236 Capsella rubella HOM05D003805 ORTHO05D004300 4.4e-08 61.6 118 40.7
Carub.0003s3237 Capsella rubella HOM05D003805 ORTHO05D004300 4.4e-08 61.6 119 41.2
VMungo0251G0164 Vigna mungo HOM05D003805 ORTHO05D004300 4.4e-08 61.6 126 38.1
Sabra07G0019500 Salix brachista HOM05D003805 ORTHO05D004300 5.7e-08 61.2 104 36.5
Psat4g094760 Pisum sativum HOM05D003805 ORTHO05D004300 7.5e-08 60.8 117 35.9
Sed0008243 Sechium edule HOM05D003805 ORTHO05D004300 7.5e-08 60.8 113 36.3
AT5G66490 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 9.8e-08 60.5 117 36.8
Lj4g0007128 Lotus japonicus HOM05D003805 ORTHO05D004300 9.8e-08 60.5 55 56.4
Lj4g0009905 Lotus japonicus HOM05D003805 ORTHO05D004300 9.8e-08 60.5 55 56.4
Psat4g094720 Pisum sativum HOM05D003805 ORTHO05D004300 9.8e-08 60.5 117 37.6
Potri.007G022300 Populus trichocarpa HOM05D003805 ORTHO05D004300 9.8e-08 60.5 104 36.5
unitig_0.g473 Utricularia gibba HOM05D003805 ORTHO05D004300 9.8e-08 60.5 58 51.7
BcaB05g23252 Brassica carinata HOM05D003805 ORTHO05D004300 1.3e-07 60.1 127 35.4
A01p23830 Brassica napus HOM05D003805 ORTHO05D004300 1.3e-07 60.1 119 36.1
BraA01t02291Z Brassica rapa HOM05D003805 ORTHO05D004300 1.3e-07 60.1 119 36.1
A09p44010 Brassica napus HOM05D003805 ORTHO05D004300 1.7e-07 59.7 117 35.9
BraA09t39859Z Brassica rapa HOM05D003805 ORTHO05D004300 1.7e-07 59.7 117 35.9
Carub.0007s0382 Capsella rubella HOM05D003805 ORTHO05D004300 1.7e-07 59.7 116 37.1
Dinv40009 Davidia involucrata HOM05D002962 ORTHO05D004300 1.7e-07 59.7 103 38.8
AL8G45040 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 2.2e-07 59.3 119 34.5
A07p17480 Brassica napus HOM05D000001 ORTHO05D010258 2.2e-07 59.3 73 46.6
Glyma.16G135400 Glycine max HOM05D003805 ORTHO05D004300 2.8e-07 58.9 111 39.6
Manes.02G096100 Manihot esculenta HOM05D003805 ORTHO05D004300 3.7e-07 58.5 114 37.7
TPR.G24102 Trifolium pratense HOM05D003805 ORTHO05D004300 3.7e-07 58.5 118 36.4
A03p48010 Brassica napus HOM05D003805 ORTHO05D004300 4.8e-07 58.2 118 35.6
CARHR160470 Cardamine hirsuta HOM05D003805 ORTHO05D004300 4.8e-07 58.2 120 34.2
Glyma.02G055000 Glycine max HOM05D003805 ORTHO05D004300 4.8e-07 58.2 126 37.3
VMungo0251G1302 Vigna mungo HOM05D003805 ORTHO05D004300 4.8e-07 58.2 126 37.3
Aqoxy6G01157 Aquilegia oxysepala HOM05D003805 ORTHO05D004300 6.3e-07 57.8 115 36.5
CARHR244820 Cardamine hirsuta HOM05D003805 ORTHO05D004300 6.3e-07 57.8 116 37.1
Glyma.02G054900 Glycine max HOM05D003805 ORTHO05D004300 6.3e-07 57.8 117 38.5
Phvul.003G255400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 6.3e-07 57.8 117 38.5
SGA_v2.0_scaffold51G18830 Striga asiatica HOM05D003805 ORTHO05D004300 6.3e-07 57.8 106 41.5
AT3G50900 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 8.3e-07 57.4 120 34.2
C07p46020 Brassica napus HOM05D003805 ORTHO05D004300 8.3e-07 57.4 118 35.6
Sp2g30240 Schrenkiella parvula HOM05D003805 ORTHO05D004300 8.3e-07 57.4 71 49.3
BcaC01g00464 Brassica carinata HOM05D003805 ORTHO05D004300 1.1e-06 57.0 112 36.6
C03p80150 Brassica napus HOM05D003805 ORTHO05D004300 1.1e-06 57.0 112 36.6
BolC3t20271H Brassica oleracea HOM05D003805 ORTHO05D004300 1.1e-06 57.0 112 36.6
Phvul.003G255300 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 1.1e-06 57.0 117 37.6
AL7G14560 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 1.4e-06 56.6 116 36.2
AT4G36500 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 1.8e-06 56.2 116 36.2
Thhalv10005334m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 1.8e-06 56.2 74 43.2
arahy.Tifrunner.gnm1.ann1.IAMR94 Arachis hypogaea HOM05D003805 ORTHO05D004300 2.4e-06 55.8 124 33.1
BcaB03g12394 Brassica carinata HOM05D003805 ORTHO05D004300 2.4e-06 55.8 112 35.7
A01p02360 Brassica napus HOM05D003805 ORTHO05D004300 2.4e-06 55.8 116 34.5
C01p02570 Brassica napus HOM05D003805 ORTHO05D004300 2.4e-06 55.8 116 34.5
CARHR281260 Cardamine hirsuta HOM05D003805 ORTHO05D004300 2.4e-06 55.8 64 48.4
Sp7g34160 Schrenkiella parvula HOM05D003805 ORTHO05D004300 2.4e-06 55.8 112 33.9
C07p61730 Brassica napus HOM05D003805 ORTHO05D004300 3.1e-06 55.5 112 35.7
BolC1t00245H Brassica oleracea HOM05D003805 ORTHO05D004300 3.1e-06 55.5 112 33.9
BolC7t46598H Brassica oleracea HOM05D003805 ORTHO05D004300 3.1e-06 55.5 112 35.7
BraA08t34177Z Brassica rapa HOM05D003805 ORTHO05D004300 3.1e-06 55.5 112 35.7
Carub.0005s1729 Capsella rubella HOM05D003805 ORTHO05D004300 3.1e-06 55.5 123 33.3
CsaV3_6G046430 Cucumis sativus L. HOM05D003805 ORTHO05D004300 3.1e-06 55.5 111 35.1
Potri.007G022200 Populus trichocarpa HOM05D003805 ORTHO05D004300 3.1e-06 55.5 104 33.7
Sc03g0003120 Simmondsia chinensis HOM05D003805 ORTHO05D004300 3.1e-06 55.5 52 48.1
AL5G31260 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 4.1e-06 55.1 120 33.3
BcaNung05311 Brassica carinata HOM05D003805 ORTHO05D004300 4.1e-06 55.1 112 33.9
A08p22170 Brassica napus HOM05D003805 ORTHO05D004300 4.1e-06 55.1 112 35.7
Sp7g34150 Schrenkiella parvula HOM05D003805 ORTHO05D004300 4.1e-06 55.1 112 35.7
BcaNung00728 Brassica carinata HOM05D003805 ORTHO05D004300 5.4e-06 54.7 112 33.9
BcaNung00729 Brassica carinata HOM05D003805 ORTHO05D004300 5.4e-06 54.7 112 33.0
C01p02580 Brassica napus HOM05D003805 ORTHO05D004300 5.4e-06 54.7 112 33.0
BolC1t00246H Brassica oleracea HOM05D003805 ORTHO05D004300 5.4e-06 54.7 112 33.0
Thhalv10026576m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 5.4e-06 54.7 112 35.7
Glyma.16G135600 Glycine max HOM05D003805 ORTHO05D004300 5.4e-06 54.7 47 57.4
Sabra07G0019300 Salix brachista HOM05D003805 ORTHO05D004300 7.0e-06 54.3 104 33.7


User provided reference genes

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