Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA238G1636 Erigeron canadensis HOM05D005053 ORTHO05D006206 4.7e-123 444.5 219 100.0
Lsat_1_v5_gn_2_86920 Lactuca sativa HOM05D005053 ORTHO05D006206 2.8e-115 418.7 219 93.2
HanXRQChr07g0199901 Helianthus annuus HOM05D005053 ORTHO05D006206 3.6e-115 418.3 219 92.7
HanXRQChr14g0448331 Helianthus annuus HOM05D005053 ORTHO05D006206 5.8e-113 411.0 219 91.8
CSS0024932 Camellia sinensis var. sinensis HOM05D005053 ORTHO05D006206 5.8e-105 384.4 219 84.5
Cc07_g05640 Coffea canephora HOM05D005053 ORTHO05D006206 2.2e-104 382.5 219 83.1
Actinidia12070 Actinidia chinensis HOM05D005053 ORTHO05D006206 3.7e-104 381.7 219 84.0
Aqoxy6G00906 Aquilegia oxysepala HOM05D005053 ORTHO05D006206 1.4e-103 379.8 219 83.1
RcHm_v2.0_Chr2g0104011 Rosa chinensis HOM05D005053 ORTHO05D006206 1.4e-103 379.8 220 83.6
Actinidia36514 Actinidia chinensis HOM05D005053 ORTHO05D006206 7.1e-103 377.5 219 84.5
Migut.H00475 Erythranthe guttata HOM05D005053 ORTHO05D006206 1.2e-102 376.7 219 83.6
Hma1.2p1_0687F.1_g203520 Hydrangea macrophylla HOM05D005053 ORTHO05D006206 2.1e-102 375.9 219 81.7
GSVIVG01005060001 Vitis vinifera HOM05D005053 ORTHO05D006206 2.3e-101 372.5 219 82.2
FvH4_1g14960 Fragaria vesca HOM05D005053 ORTHO05D006206 3.0e-101 372.1 221 82.8
FAN26G1713 Fragaria x ananassa HOM05D005053 ORTHO05D006206 3.9e-101 371.7 221 82.8
FAN23G1215 Fragaria x ananassa HOM05D005053 ORTHO05D006206 5.1e-101 371.3 221 82.4
vmacro17912 Vaccinium macrocarpon HOM05D005053 ORTHO05D006206 6.6e-101 370.9 219 79.5
MD02G1163200 Malus domestica HOM05D005053 ORTHO05D006206 1.1e-100 370.2 220 82.7
FAN19G0163 Fragaria x ananassa HOM05D005053 ORTHO05D006206 1.9e-100 369.4 221 82.4
FAN28G1734 Fragaria x ananassa HOM05D005053 ORTHO05D006206 2.1e-99 365.9 222 82.0
Cpa.g.sc6.408 Carica papaya HOM05D005053 ORTHO05D006206 3.6e-99 365.2 219 80.8
Glyma.17G180900 Glycine max HOM05D005053 ORTHO05D006206 3.6e-99 365.2 220 80.5
Oeu004887.1 Olea europaea HOM05D005053 ORTHO05D006206 6.2e-99 364.4 219 81.3
Lalb_Chr09g0333681 Lupinus albus HOM05D005053 ORTHO05D006206 8.9e-98 360.5 220 79.5
Manes.13G129200 Manihot esculenta HOM05D005053 ORTHO05D006206 8.9e-98 360.5 220 80.5
Gorai.008G072800 Gossypium raimondii HOM05D005053 ORTHO05D006206 2.0e-97 359.4 220 80.5
Cfa003962 Carpinus fangiana HOM05D005053 ORTHO05D006206 2.6e-97 359.0 221 81.0
unitig_736.g22369 Utricularia gibba HOM05D005053 ORTHO05D006206 2.6e-97 359.0 221 80.1
Ca_22210_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 3.4e-97 358.6 220 79.1
MD15G1276200 Malus domestica HOM05D005053 ORTHO05D006206 3.4e-97 358.6 219 80.8
Phvul.003G248000 Phaseolus vulgaris HOM05D005053 ORTHO05D006206 3.4e-97 358.6 220 79.5
PGR102G2816 Punica granatum HOM05D005053 ORTHO05D006206 3.4e-97 358.6 220 80.5
MSTRG.15402 Avicennia marina HOM05D005053 ORTHO05D006206 4.4e-97 358.2 228 76.3
CAN.G470.7 Capsicum annuum HOM05D005053 ORTHO05D006206 4.4e-97 358.2 219 79.5
Atru.chr3.440 Acer truncatum HOM05D005053 ORTHO05D006206 5.8e-97 357.8 220 80.5
arahy.Tifrunner.gnm1.ann1.IMYE37 Arachis hypogaea HOM05D005053 ORTHO05D006206 9.9e-97 357.1 220 79.1
arahy.Tifrunner.gnm1.ann1.VE46QQ Arachis hypogaea HOM05D005053 ORTHO05D006206 9.9e-97 357.1 220 79.1
Lj4g0026236 Lotus japonicus HOM05D005053 ORTHO05D006206 1.3e-96 356.7 220 78.2
PSO541G4895 Papaver somniferum HOM05D005053 ORTHO05D006206 1.3e-96 356.7 219 80.4
Nitab4.5_0000806g0140 Nicotiana tabacum HOM05D005053 ORTHO05D006206 2.2e-96 355.9 219 79.0
Solyc02g065180.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 2.2e-96 355.9 219 79.9
Sopen02g015310 Solanum pennellii HOM05D005053 ORTHO05D006206 2.2e-96 355.9 219 79.9
COL.COLO4_11341 Corchorus olitorius HOM05D005053 ORTHO05D006206 2.9e-96 355.5 220 79.1
Thecc.01G049700 Theobroma cacao HOM05D005053 ORTHO05D006206 3.7e-96 355.1 221 79.6
VMungo0251G0766 Vigna mungo HOM05D005053 ORTHO05D006206 4.9e-96 354.8 220 79.5
PSO675G4006 Papaver somniferum HOM05D005053 ORTHO05D006206 1.4e-95 353.2 219 79.5
AUR62001971 Chenopodium quinoa HOM05D005053 ORTHO05D006206 9.2e-95 350.5 219 77.6
TAR376G0500 Trochodendron aralioides HOM05D005053 ORTHO05D006206 9.2e-95 350.5 219 78.1
Medtr8g079240 Medicago truncatula HOM05D005053 ORTHO05D006206 1.2e-94 350.1 220 76.4
SGA_v2.0_scaffold27G11440 Striga asiatica HOM05D005053 ORTHO05D006206 1.2e-94 350.1 220 78.2
Hund13583 Selenicereus undatus HOM05D005053 ORTHO05D006206 1.6e-94 349.7 219 77.6
Dinv29944 Davidia involucrata HOM05D005053 ORTHO05D006206 2.7e-94 349.0 197 85.3
SGA_v2.0_scaffold204G41608 Striga asiatica HOM05D005053 ORTHO05D006206 2.7e-94 349.0 220 77.7
Sc03g0001310 Simmondsia chinensis HOM05D005053 ORTHO05D006206 3.5e-94 348.6 219 79.5
EL10Ac6g15144 Beta vulgaris HOM05D005053 ORTHO05D006206 4.6e-94 348.2 219 77.6
Nn6g32115 Nelumbo nucifera HOM05D005053 ORTHO05D006206 4.6e-94 348.2 220 75.5
MELO3C007534.2 Cucumis melo HOM05D005053 ORTHO05D006206 5.1e-93 344.7 221 76.0
CsaV3_6G042980 Cucumis sativus L. HOM05D005053 ORTHO05D006206 8.6e-93 344.0 221 76.0
ClCG01G016600 Citrullus lanatus HOM05D005053 ORTHO05D006206 1.1e-92 343.6 221 75.6
Nn5g29376 Nelumbo nucifera HOM05D005053 ORTHO05D006206 1.9e-92 342.8 219 77.6
Sed0021889 Sechium edule HOM05D005053 ORTHO05D006206 7.3e-92 340.9 220 75.5
Ciclev10026393m.g Citrus clementina HOM05D005053 ORTHO05D006206 2.8e-91 339.0 238 73.1
Peaxi162Scf00049g01010 Petunia axillaris HOM05D005053 ORTHO05D006206 2.8e-91 339.0 232 72.4
Potri.007G037800 Populus trichocarpa HOM05D005053 ORTHO05D006206 1.8e-90 336.3 219 75.3
THA.LOC104819229 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 1.8e-90 336.3 219 74.9
Eucgr.H01988 Eucalyptus grandis HOM05D005053 ORTHO05D006206 1.2e-89 333.6 220 74.1
Carub.0008s2757 Capsella rubella HOM05D005053 ORTHO05D006206 7.6e-89 330.9 220 75.5
AL8G44450 Arabidopsis lyrata HOM05D005053 ORTHO05D006206 2.9e-88 328.9 220 75.0
Rhsim08G0104900 Rhododendron simsii HOM05D005053 ORTHO05D006206 8.4e-88 327.4 299 58.2
CARHR280750 Cardamine hirsuta HOM05D005053 ORTHO05D006206 1.1e-87 327.0 220 75.0
Aa31LG1G15480 Aethionema arabicum HOM05D005053 ORTHO05D006206 1.9e-87 326.2 220 73.2
AT5G66930 Arabidopsis thaliana HOM05D005053 ORTHO05D006206 2.4e-87 325.9 219 74.9
THA.LOC104821262 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 5.4e-87 324.7 220 72.7
Haze_15460 Corylus avellana HOM05D005053 ORTHO05D006206 1.3e-85 320.1 199 79.4
TAR628G0491 Trochodendron aralioides HOM05D005053 ORTHO05D006206 2.3e-85 319.3 192 80.7
CiPaw.01G025900 Carya illinoinensis HOM05D005053 ORTHO05D006206 1.1e-84 317.0 196 78.1
Sp2g29730 Schrenkiella parvula HOM05D005053 ORTHO05D006206 1.1e-84 317.0 220 72.3
Gohir.A12G069100 Gossypium hirsutum HOM05D005053 ORTHO05D006206 2.5e-84 315.8 193 80.3
Gohir.D12G090200 Gossypium hirsutum HOM05D005053 ORTHO05D006206 5.6e-84 314.7 193 79.3
QL06p043337 Quercus lobata HOM05D005053 ORTHO05D006206 1.6e-83 313.2 319 54.2
Ca_22228_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 6.2e-83 311.2 193 77.2
BcaB04g20086 Brassica carinata HOM05D005053 ORTHO05D006206 8.1e-83 310.8 221 71.0
HPP92_024294 Vanilla planifolia HOM05D005053 ORTHO05D006206 8.1e-83 310.8 221 72.9
HPP92_024303 Vanilla planifolia HOM05D005053 ORTHO05D006206 8.1e-83 310.8 221 72.9
ATR0225G009 Amborella trichopoda HOM05D005053 ORTHO05D006206 6.9e-82 307.8 220 70.9
Thhalv10005270m.g Eutrema salsugineum HOM05D005053 ORTHO05D006206 6.9e-82 307.8 212 72.6
AUR62003832 Chenopodium quinoa HOM05D005053 ORTHO05D006206 1.5e-81 306.6 192 77.1
RhsimUnG0070600 Rhododendron simsii HOM05D005053 ORTHO05D006206 2.0e-81 306.2 288 56.9
Nitab4.5_0009901g0010 Nicotiana tabacum HOM05D005053 ORTHO05D006206 2.6e-81 305.8 204 74.0
TWI09G0689 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 3.4e-81 305.4 198 76.3
TWI53G1273 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 1.7e-80 303.1 195 75.9
Duzib264G0685 Durio zibethinus HOM05D005053 ORTHO05D006206 2.2e-80 302.8 193 75.1
Ah.02g124120 Amaranthus hybridus HOM05D005053 ORTHO05D006206 1.9e-79 299.7 210 70.5
BraA09t36613Z Brassica rapa HOM05D005053 ORTHO05D006206 3.2e-79 298.9 221 68.8
A09p09640 Brassica napus HOM05D005053 ORTHO05D006206 4.2e-79 298.5 221 69.2
SEGI_13826 Sequoiadendron giganteum HOM05D005053 ORTHO05D006206 4.2e-79 298.5 219 66.2
BcaC04g23174 Brassica carinata HOM05D005053 ORTHO05D006206 5.4e-79 298.1 222 68.9
C09p11390 Brassica napus HOM05D005053 ORTHO05D006206 5.4e-79 298.1 222 68.9
Duzib264G0045 Durio zibethinus HOM05D005053 ORTHO05D006206 5.4e-79 298.1 193 74.1
Peaxi162Scf00993g00120 Petunia axillaris HOM05D005053 ORTHO05D006206 1.6e-78 296.6 193 73.6
BraA07t29424Z Brassica rapa HOM05D005053 ORTHO05D006206 6.0e-78 294.7 221 69.2
BcaC06g34767 Brassica carinata HOM05D005053 ORTHO05D006206 7.9e-78 294.3 221 68.8
C07p24820 Brassica napus HOM05D005053 ORTHO05D006206 7.9e-78 294.3 221 68.8
BolC9t54027H Brassica oleracea HOM05D005053 ORTHO05D006206 1.3e-77 293.5 223 68.6
PGSC0003DMG400010070 Solanum tuberosum HOM05D005053 ORTHO05D006206 1.3e-77 293.5 213 68.1
A07p16970 Brassica napus HOM05D005053 ORTHO05D006206 3.0e-77 292.4 221 68.3
Lj7A44T18 Lonicera japonica HOM05D005053 ORTHO05D006206 6.6e-77 291.2 179 79.9
BcaB02g09970 Brassica carinata HOM05D005053 ORTHO05D006206 8.7e-77 290.8 221 68.3
Duzib147G0596 Durio zibethinus HOM05D005053 ORTHO05D006206 1.1e-76 290.4 193 74.6
Dinv39902 Davidia involucrata HOM05D005053 ORTHO05D006206 2.5e-76 289.3 171 80.1
Solyc02g090330.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 9.6e-76 287.3 213 66.7
CiPaw.02G011700 Carya illinoinensis HOM05D005053 ORTHO05D006206 1.3e-75 287.0 221 67.0
MBI16_g19902_MAGBIO Magnolia biondii HOM05D005053 ORTHO05D006206 8.1e-75 284.3 183 77.0
DCAR_025697 Daucus carota HOM05D005053 ORTHO05D006206 1.1e-74 283.9 181 75.7
SMO271G0126 Selaginella moellendorffii HOM05D005053 ORTHO05D006206 1.3e-72 276.9 219 63.0
Sabra07G0034100 Salix brachista HOM05D005053 ORTHO05D006206 6.4e-72 274.6 196 69.4
BolC7t43007H Brassica oleracea HOM05D005053 ORTHO05D006206 7.1e-71 271.2 210 67.1
Mapoly0011s0084 Marchantia polymorpha HOM05D005053 ORTHO05D006206 1.6e-70 270.0 220 62.7
Prupe.7G140800 Prunus persica HOM05D005053 ORTHO05D006206 5.1e-69 265.0 162 80.2
BcaC03g18393 Brassica carinata HOM05D005053 ORTHO05D006206 5.6e-68 261.5 224 62.5
C02p64670 Brassica napus HOM05D005053 ORTHO05D006206 5.6e-68 261.5 224 62.5
Os12g0428200 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 1.3e-67 260.4 219 61.2
BolC2t12528H Brassica oleracea HOM05D005053 ORTHO05D006206 2.4e-66 256.1 219 62.6
Nitab4.5_0002157g0070 Nicotiana tabacum HOM05D005053 ORTHO05D006206 3.4e-65 252.3 169 72.8
AagrBONN_evm.TU.Sc2ySwM_344.1821 Anthoceros agrestis HOM05D005053 ORTHO05D006206 2.3e-61 239.6 195 63.1
Zm00001eb184240 Zea mays HOM05D005053 ORTHO05D006206 3.0e-61 239.2 219 58.4
Pp3c11_5110 Physcomitrium patens HOM05D005053 ORTHO05D006206 1.5e-60 236.9 221 55.2
Psat4g088960 Pisum sativum HOM05D005053 ORTHO05D006206 3.3e-60 235.7 158 74.1
Ah.03g144090 Amaranthus hybridus HOM05D005053 ORTHO05D006206 1.4e-58 230.3 195 63.1
CBR_g23008 Chara braunii HOM05D005053 ORTHO05D006206 6.9e-58 228.0 221 52.9
AagrBONN_evm.TU.Sc2ySwM_344.1822 Anthoceros agrestis HOM05D005053 ORTHO05D006206 4.5e-57 225.3 222 51.8
Os12g0446700 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 6.5e-56 221.5 192 59.9
Sopen02g035010 Solanum pennellii HOM05D005053 ORTHO05D006206 2.8e-51 206.1 161 64.6
AagrBONN_evm.TU.Sc2ySwM_369.468 Anthoceros agrestis HOM05D000050 ORTHO05D000771 1.1e-44 184.1 219 45.2
CDE02G0556 Ceratophyllum demersum HOM05D005053 ORTHO05D006206 9.7e-44 181.0 149 62.4
Psat4g089040 Pisum sativum HOM05D005053 ORTHO05D006206 1.1e-42 177.6 182 53.8
SGA_v2.0_scaffold15G07238 Striga asiatica HOM05D005053 ORTHO05D006206 2.7e-38 162.9 248 43.5
TPR.G40637 Trifolium pratense HOM05D005053 ORTHO05D006206 6.1e-38 161.8 93 80.6
TPR.G672 Trifolium pratense HOM05D005053 ORTHO05D006206 2.6e-33 146.4 99 71.7
Cre07.g334700 Chlamydomonas reinhardtii HOM05D005053 ORTHO05D006206 4.5e-33 145.6 228 36.0
MCO07G250 Micromonas commoda HOM05D005053 ORTHO05D006206 4.2e-31 139.0 221 35.7
FAN19G1388 Fragaria x ananassa HOM05D005053 ORTHO05D006206 6.7e-29 131.7 84 77.4
Nitab4.5_0003750g0060 Nicotiana tabacum HOM05D005053 ORTHO05D006206 2.6e-28 129.8 141 48.9
Zm00001eb184160 Zea mays HOM05D005053 ORTHO05D006206 2.6e-28 129.8 84 72.6
PRCOL_00006110 Prasinoderma coloniale HOM05D005053 ORTHO05D006206 1.7e-27 127.1 222 33.8
Ciclev10027037m.g Citrus clementina HOM05D005053 ORTHO05D006206 3.4e-20 102.8 83 67.5
AUR62028910 Chenopodium quinoa HOM05D005053 ORTHO05D006206 1.2e-17 94.4 93 50.5
CAN.G836.41 Capsicum annuum HOM05D005053 ORTHO05D024763 7.2e-15 85.1 148 40.5
Cfa024505 Carpinus fangiana HOM05D005053 ORTHO05D124968 1.4e-10 70.9 206 26.2


User provided reference genes

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