Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA238G1619 Erigeron canadensis HOM05D004065 ORTHO05D004806 0.0e+00 2285.8 1193 100.0
HanXRQChr07g0201231 Helianthus annuus HOM05D004065 ORTHO05D004806 0.0e+00 2084.7 1198 91.0
Lsat_1_v5_gn_2_117761 Lactuca sativa HOM05D004065 ORTHO05D004806 0.0e+00 2045.8 1204 89.9
Dinv25990 Davidia involucrata HOM05D004065 ORTHO05D004806 0.0e+00 1663.3 1203 74.0
Hma1.2p1_0727F.1_g209200 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 0.0e+00 1640.9 1202 73.0
Dinv31435 Davidia involucrata HOM05D004065 ORTHO05D004806 0.0e+00 1607.8 1203 72.3
CSS0036524 Camellia sinensis var. sinensis HOM05D004065 ORTHO05D004806 0.0e+00 1565.1 1202 70.5
DCAR_019167 Daucus carota HOM05D004065 ORTHO05D004806 0.0e+00 1563.5 1218 69.0
Cc02_g08160 Coffea canephora HOM05D004065 ORTHO05D004806 0.0e+00 1551.2 1205 69.9
Sopen06g010560 Solanum pennellii HOM05D004065 ORTHO05D004806 0.0e+00 1537.3 1216 68.7
Thecc.10G046900 Theobroma cacao HOM05D004065 ORTHO05D004806 0.0e+00 1504.2 1231 67.1
Atru.chr12.508 Acer truncatum HOM05D004065 ORTHO05D004806 0.0e+00 1500.3 1249 66.1
Potri.010G207900 Populus trichocarpa HOM05D004065 ORTHO05D004806 0.0e+00 1487.6 1215 67.2
CANSAT56G4002 Cannabis sativa HOM05D004065 ORTHO05D004806 0.0e+00 1479.2 1193 66.5
Rhsim09G0164300 Rhododendron simsii HOM05D004065 ORTHO05D004806 0.0e+00 1474.1 1347 62.4
Cfa001505 Carpinus fangiana HOM05D004065 ORTHO05D004806 0.0e+00 1467.2 1214 66.4
TAR633G2080 Trochodendron aralioides HOM05D004065 ORTHO05D004806 0.0e+00 1465.7 1210 66.0
TWI38G1478 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 0.0e+00 1461.4 1208 65.6
Gorai.012G069700 Gossypium raimondii HOM05D004065 ORTHO05D004806 0.0e+00 1460.3 1216 66.0
TWI15G0503 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 0.0e+00 1460.3 1212 66.5
Duzib114G0580 Durio zibethinus HOM05D004065 ORTHO05D004806 0.0e+00 1457.6 1252 64.9
Gohir.D04G062400 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1453.7 1216 65.8
Gohir.A10G215800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1445.6 1223 65.8
MSTRG.8235 Avicennia marina HOM05D004065 ORTHO05D004806 0.0e+00 1441.8 1206 66.8
SGA_v2.0_scaffold2G00996 Striga asiatica HOM05D004065 ORTHO05D004806 0.0e+00 1440.2 1200 66.4
Gorai.011G255800 Gossypium raimondii HOM05D004065 ORTHO05D004806 0.0e+00 1437.9 1223 65.4
GSVIVG01016585001 Vitis vinifera HOM05D004065 ORTHO05D004806 0.0e+00 1437.6 1209 65.8
Eucgr.G02920 Eucalyptus grandis HOM05D004065 ORTHO05D004806 0.0e+00 1436.4 1209 64.5
Nn2g10418 Nelumbo nucifera HOM05D004065 ORTHO05D004806 0.0e+00 1436.0 1208 64.6
Manes.10G033000 Manihot esculenta HOM05D004065 ORTHO05D004806 0.0e+00 1434.1 1217 65.9
Potri.008G052700 Populus trichocarpa HOM05D004065 ORTHO05D004806 0.0e+00 1432.2 1213 65.1
Ciclev10030542m.g Citrus clementina HOM05D004065 ORTHO05D004806 0.0e+00 1430.2 1212 65.0
Gohir.D10G224800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1429.8 1223 65.2
FvH4_7g21970 Fragaria vesca HOM05D004065 ORTHO05D004806 0.0e+00 1428.3 1209 63.7
Migut.F01518 Erythranthe guttata HOM05D004065 ORTHO05D004806 0.0e+00 1427.9 1179 67.5
Sed0019555 Sechium edule HOM05D004065 ORTHO05D004806 0.0e+00 1416.7 1206 63.0
Duzib106G1820 Durio zibethinus HOM05D004065 ORTHO05D004806 0.0e+00 1415.6 1225 64.7
Thhalv10019927m.g Eutrema salsugineum HOM05D004065 ORTHO05D004806 0.0e+00 1412.5 1211 64.0
BcaB04g21060 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 1411.4 1208 64.1
THA.LOC104799352 Tarenaya hassleriana HOM05D004065 ORTHO05D004806 0.0e+00 1409.0 1208 63.8
Prupe.2G231600 Prunus persica HOM05D004065 ORTHO05D004806 0.0e+00 1407.1 1215 63.5
CsaV3_5G008100 Cucumis sativus L. HOM05D004065 ORTHO05D004806 0.0e+00 1406.7 1208 63.2
Glyma.02G093600 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1405.2 1181 64.2
RcHm_v2.0_Chr1g0366301 Rosa chinensis HOM05D004065 ORTHO05D004806 0.0e+00 1401.0 1143 65.5
AL3G24260 Arabidopsis lyrata HOM05D004065 ORTHO05D004806 0.0e+00 1399.4 1210 63.3
AT3G12590 Arabidopsis thaliana HOM05D004065 ORTHO05D004806 0.0e+00 1397.5 1209 63.2
Sabra10G0160500 Salix brachista HOM05D004065 ORTHO05D004806 0.0e+00 1396.7 1244 63.0
BNapus_Darmor_BZH_scaffold_149p00120 Brassica napus HOM05D004065 ORTHO05D004806 0.0e+00 1394.8 1250 62.0
BraA01t04124Z Brassica rapa HOM05D004065 ORTHO05D004806 0.0e+00 1394.8 1250 62.0
CARHR087100 Cardamine hirsuta HOM05D004065 ORTHO05D004806 0.0e+00 1394.8 1208 62.7
BolC1t05197H Brassica oleracea HOM05D004065 ORTHO05D004806 0.0e+00 1394.0 1236 62.5
MD07G1194200 Malus domestica HOM05D004065 ORTHO05D004806 0.0e+00 1394.0 1217 63.2
C01p52580 Brassica napus HOM05D004065 ORTHO05D004806 0.0e+00 1393.6 1250 61.9
FAN10G0299 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1390.9 1226 62.2
Aa31LG3G60 Aethionema arabicum HOM05D004065 ORTHO05D004806 0.0e+00 1387.9 1233 62.8
Carub.0003s1194 Capsella rubella HOM05D004065 ORTHO05D004806 0.0e+00 1387.9 1208 62.9
MELO3C023859.2 Cucumis melo HOM05D004065 ORTHO05D004806 0.0e+00 1387.5 1210 62.7
MD01G1124000 Malus domestica HOM05D004065 ORTHO05D004806 0.0e+00 1387.5 1162 64.6
Lalb_Chr04g0257821 Lupinus albus HOM05D004065 ORTHO05D004806 0.0e+00 1385.9 1182 63.9
Phvul.008G013500 Phaseolus vulgaris HOM05D004065 ORTHO05D004806 0.0e+00 1384.8 1186 63.7
SalBow6G0580 Salvia bowleyana HOM05D004065 ORTHO05D004806 0.0e+00 1383.2 1247 63.0
FAN06G3757 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1381.7 1226 62.0
FAN06G3343 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1377.5 1226 61.7
FAN01G1867 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1375.5 1226 61.6
Ca_07234_v3 Cicer arietinum L. HOM05D004065 ORTHO05D004806 0.0e+00 1371.3 1187 63.6
Gohir.A05G350100 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1369.4 1216 62.7
CiPaw.01G284400 Carya illinoinensis HOM05D004065 ORTHO05D004806 0.0e+00 1363.6 1213 62.7
Aqoxy2G02042 Aquilegia oxysepala HOM05D004065 ORTHO05D004806 0.0e+00 1362.4 1213 61.4
Medtr7g024190 Medicago truncatula HOM05D004065 ORTHO05D004806 0.0e+00 1361.3 1193 63.5
Lj1g0007112 Lotus japonicus HOM05D004065 ORTHO05D004806 0.0e+00 1356.7 1191 63.3
Psat3g180760 Pisum sativum HOM05D004065 ORTHO05D004806 0.0e+00 1356.3 1186 62.6
arahy.Tifrunner.gnm1.ann1.P8VZLW Arachis hypogaea HOM05D004065 ORTHO05D004806 0.0e+00 1355.9 1215 62.1
arahy.Tifrunner.gnm1.ann1.XU51RJ Arachis hypogaea HOM05D004065 ORTHO05D004806 0.0e+00 1355.9 1215 62.1
BraA03t12924Z Brassica rapa HOM05D004065 ORTHO05D004806 0.0e+00 1355.1 1212 62.0
Sp3g10730 Schrenkiella parvula HOM05D004065 ORTHO05D004806 0.0e+00 1354.3 1208 61.9
Haze_17038 Corylus avellana HOM05D004065 ORTHO05D004806 0.0e+00 1349.3 1230 62.4
FAN03G1397 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1342.0 1148 62.8
A03p37690 Brassica napus HOM05D000062 ORTHO05D004806 0.0e+00 1339.3 1199 61.8
LjContig00357g0027530 Lotus japonicus HOM05D004065 ORTHO05D004806 0.0e+00 1330.1 1204 61.3
PGR142G1305 Punica granatum HOM05D004065 ORTHO05D004806 0.0e+00 1325.8 1138 63.7
TPR.G15495 Trifolium pratense HOM05D004065 ORTHO05D004806 0.0e+00 1324.7 1168 62.9
DCAR_015196 Daucus carota HOM05D004065 ORTHO05D004806 0.0e+00 1324.3 1198 62.1
Nitab4.5_0001836g0030 Nicotiana tabacum HOM05D004065 ORTHO05D004806 0.0e+00 1320.8 1023 68.6
BcaC01g04018 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 1318.9 1208 60.8
C03p45740 Brassica napus HOM05D000062 ORTHO05D004806 0.0e+00 1315.1 1199 60.8
ClCG07G003370 Citrullus lanatus HOM05D004065 ORTHO05D004806 0.0e+00 1314.7 1408 54.2
Glyma.20G099500 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1308.1 1208 60.4
Glyma.10G289700 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1305.8 1215 60.4
PSO339G3310 Papaver somniferum HOM05D004065 ORTHO05D004806 0.0e+00 1301.6 1152 62.9
AUR62038371 Chenopodium quinoa HOM05D004065 ORTHO05D004806 0.0e+00 1298.9 1240 58.5
Lj8C86G13 Lonicera japonica HOM05D004065 ORTHO05D004806 0.0e+00 1295.4 1179 61.8
EL10Ac2g03418 Beta vulgaris HOM05D004065 ORTHO05D004806 0.0e+00 1284.2 1230 59.3
COL.COLO4_14967 Corchorus olitorius HOM05D004065 ORTHO05D004806 0.0e+00 1261.5 1151 62.7
Lalb_Chr06g0164301 Lupinus albus HOM05D004065 ORTHO05D004806 0.0e+00 1226.8 1150 60.4
Oeu016023.5 Olea europaea HOM05D004065 ORTHO05D004806 0.0e+00 1223.0 1063 63.1
unitig_26.g10019 Utricularia gibba HOM05D004065 ORTHO05D004806 0.0e+00 1197.2 1124 60.9
AUR62040961 Chenopodium quinoa HOM05D004065 ORTHO05D004806 0.0e+00 1139.4 1065 58.7
BcaB04g21053 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 1122.1 1192 55.5
Sc20g0002620 Simmondsia chinensis HOM05D004065 ORTHO05D004806 0.0e+00 1081.6 982 61.1
ATR0559G344 Amborella trichopoda HOM05D004065 ORTHO05D004806 8.2e-312 1074.3 1210 53.0
Glyma.18G288500 Glycine max HOM05D004065 ORTHO05D004806 5.4e-306 1054.7 1192 52.2
QL08p059042 Quercus lobata HOM05D004065 ORTHO05D004806 2.2e-299 1032.7 831 66.9
HPP92_003382 Vanilla planifolia HOM05D004065 ORTHO05D004806 3.3e-295 1018.8 1175 51.2
Actinidia13867 Actinidia chinensis HOM05D004065 ORTHO05D004806 1.5e-287 993.4 785 70.3
SEGI_35631 Sequoiadendron giganteum HOM05D004065 ORTHO05D004806 7.6e-276 954.5 1205 48.5
CDE04G2206 Ceratophyllum demersum HOM05D004065 ORTHO05D004806 2.2e-275 953.0 1140 50.4
Solyc06g042950.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 1.5e-247 860.5 635 70.4
Psat6g236120 Pisum sativum HOM05D004065 ORTHO05D004806 1.7e-243 847.0 737 62.1
CiPaw.02G182500 Carya illinoinensis HOM05D004065 ORTHO05D004806 1.6e-241 840.5 681 64.3
Zm00001eb139750 Zea mays HOM05D004065 ORTHO05D004806 6.1e-241 838.6 941 50.5
Peaxi162Scf00658g00731 Petunia axillaris HOM05D004065 ORTHO05D004806 5.2e-232 808.9 615 68.9
Mapoly0126s0012 Marchantia polymorpha HOM05D004065 ORTHO05D004806 9.4e-226 788.1 1257 41.2
FAN06G3693 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.8e-224 783.9 670 62.4
Pp3c24_6470 Physcomitrium patens HOM05D004065 ORTHO05D004806 5.0e-219 765.8 1264 40.7
Hund20020 Selenicereus undatus HOM05D004065 ORTHO05D004806 2.1e-217 760.4 665 61.2
BolC3t16849H Brassica oleracea HOM05D004065 ORTHO05D004806 1.0e-211 741.5 703 59.7
AagrBONN_evm.TU.Sc2ySwM_344.343 Anthoceros agrestis HOM05D004065 ORTHO05D004806 1.3e-203 714.5 1158 41.3
BcaB04g21068 Brassica carinata HOM05D004065 ORTHO05D004806 1.6e-196 691.0 692 57.5
Cpa.g.sc1437.1 Carica papaya HOM05D004065 ORTHO05D004806 9.9e-191 671.8 595 62.0
Nitab4.5_0005137g0020 Nicotiana tabacum HOM05D004065 ORTHO05D004806 5.1e-187 659.4 520 66.2
Actinidia29212 Actinidia chinensis HOM05D004065 ORTHO05D004806 7.3e-186 655.6 591 60.9
SMO146G0347 Selaginella moellendorffii HOM05D004065 ORTHO05D004806 2.4e-184 650.6 1136 38.9
Nitab4.5_0005137g0010 Nicotiana tabacum HOM05D004065 ORTHO05D004806 8.1e-161 572.4 454 68.9
Solyc06g042960.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 3.1e-160 570.5 455 68.6
Peaxi162Scf00658g00725 Petunia axillaris HOM05D004065 ORTHO05D004806 3.5e-148 530.4 430 68.1
CBR_g54636 Chara braunii HOM05D004065 ORTHO05D004806 1.6e-140 505.0 1497 29.6
Cpa.g.sc1.377 Carica papaya HOM05D004065 ORTHO05D004806 2.0e-122 444.9 388 65.5
QL08p059051 Quercus lobata HOM05D004065 ORTHO05D004806 1.7e-121 441.8 402 62.7
SHI22587 Sapria himalayana HOM05D004065 ORTHO05D004806 4.0e-91 340.9 421 48.9
Psat6g236080 Pisum sativum HOM05D004065 ORTHO05D004806 1.5e-90 339.0 364 55.2
Ah.16g107250 Amaranthus hybridus HOM05D004065 ORTHO05D004806 9.8e-90 336.3 485 46.8
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 2.0e-87 328.6 309 57.3
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 7.8e-79 300.1 269 59.9
CiPaw.02G182400 Carya illinoinensis HOM05D004065 ORTHO05D004806 1.2e-76 292.7 254 64.6
FAN06G4849 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.4e-72 279.3 386 45.3
SHI22586 Sapria himalayana HOM05D004065 ORTHO05D004806 3.5e-71 274.6 300 51.3
BolC8t48103H Brassica oleracea HOM05D004065 ORTHO05D004806 7.3e-69 266.9 225 59.6
Hma1.2p1_1137F.1_g260730 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 6.2e-68 263.8 202 70.8
Nn8g40630 Nelumbo nucifera HOM05D004065 ORTHO05D004806 1.4e-59 236.1 233 56.7
Hma1.2p1_0067F.1_g037070 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 1.5e-50 206.1 159 69.2
FAN18G1692 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.4e-48 199.5 210 54.3
FAN14G4766 Fragaria x ananassa HOM05D004065 ORTHO05D004806 9.3e-48 196.8 208 54.3
Os01g0974300 Oryza sativa ssp. japonica HOM05D004065 ORTHO05D004806 3.5e-47 194.9 179 54.2
FAN03G2077 Fragaria x ananassa HOM05D004065 ORTHO05D004806 7.9e-47 193.7 208 53.4
FAN25G3689 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.8e-46 192.6 205 54.1
FvH4_7g22002 Fragaria vesca HOM05D004065 ORTHO05D004806 2.3e-46 192.2 121 80.2
Oeu012240.1 Olea europaea HOM05D004065 ORTHO05D004806 9.6e-45 186.8 168 62.5
FAN06G1862 Fragaria x ananassa HOM05D004065 ORTHO05D004806 3.5e-39 168.3 134 61.2
FAN11G1748 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.3e-38 165.6 130 62.3
FAN08G2500 Fragaria x ananassa HOM05D000391 ORTHO05D000293 2.5e-37 162.2 150 55.3
FvH4_7g26620 Fragaria vesca HOM05D004065 ORTHO05D004806 7.4e-37 160.6 130 60.8
FAN01G0794 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.2e-34 153.3 180 51.7
FAN01G2840 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.6e-31 142.9 132 62.1
MBI05_g10364_MAGBIO Magnolia biondii HOM05D004065 ORTHO05D004806 4.3e-29 134.8 114 58.8
FAN25G3365 Fragaria x ananassa HOM05D004065 ORTHO05D004806 3.7e-28 131.7 111 58.6
FAN03G1547 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.4e-22 113.2 129 45.0
Nitab4.5_0005137g0030 Nicotiana tabacum HOM05D004065 ORTHO05D004806 3.9e-22 111.7 93 72.0
Nitab4.5_0001836g0020 Nicotiana tabacum HOM05D004065 ORTHO05D004806 5.7e-21 107.8 94 71.3
AagrBONN_evm.TU.Sc2ySwM_344.348 Anthoceros agrestis HOM05D004065 ORTHO05D004806 3.4e-18 98.6 230 35.7
AagrBONN_evm.TU.Sc2ySwM_344.350 Anthoceros agrestis HOM05D004065 ORTHO05D004806 3.2e-16 92.0 64 68.8
SHI22581 Sapria himalayana HOM05D004065 ORTHO05D004806 3.2e-16 92.0 175 37.1
Peaxi162Scf00658g00733 Petunia axillaris HOM05D004065 ORTHO05D004806 2.3e-14 85.9 73 67.1
Gohir.A12G155100 Gossypium hirsutum HOM05D004065 ORTHO05D004806 3.0e-14 85.5 56 71.4
Solyc06g042980.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 1.5e-13 83.2 60 73.3
arahy.Tifrunner.gnm1.ann1.JMTW06 Arachis hypogaea HOM05D004065 ORTHO05D004806 3.3e-13 82.0 57 75.4
Cre17.g707100 Chlamydomonas reinhardtii HOM05D004065 ORTHO05D004806 1.7e-12 79.7 94 42.6
AagrBONN_evm.TU.Sc2ySwM_344.349 Anthoceros agrestis HOM05D004065 ORTHO05D004806 2.8e-12 79.0 190 32.1
Zm00001eb362160 Zea mays HOM05D008199 ORTHO05D010334 5.0e-09 68.2 150 35.3
SHI22580 Sapria himalayana HOM05D004065 ORTHO05D004806 1.9e-08 66.2 143 40.6
SHI22582 Sapria himalayana HOM05D004065 ORTHO05D004806 2.5e-08 65.9 72 47.2
Cfa005276 Carpinus fangiana HOM05D004065 ORTHO05D020362 1.4e-06 60.1 98 50.0
Gohir.D13G142400 Gossypium hirsutum HOM05D000260 ORTHO05D020362 1.8e-06 59.7 64 59.4
Gorai.002G055300 Gossypium raimondii HOM05D000671 ORTHO05D000797 4.0e-06 58.5 70 52.9


User provided reference genes

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