Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA238G1615 Erigeron canadensis HOM05D004487 ORTHO05D005483 4.7e-115 417.9 217 100.0
HanXRQChr14g0458831 Helianthus annuus HOM05D004487 ORTHO05D005483 3.5e-78 295.4 237 68.8
Lsat_1_v5_gn_2_120680 Lactuca sativa HOM05D004487 ORTHO05D005483 1.9e-71 273.1 261 62.1
QL06p033465 Quercus lobata HOM05D004487 ORTHO05D005483 3.3e-60 235.7 227 55.5
Nitab4.5_0007717g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 5.6e-60 235.0 233 55.4
Duzib147G1438 Durio zibethinus HOM05D004487 ORTHO05D005483 2.1e-59 233.0 233 54.5
COL.COLO4_11036 Corchorus olitorius HOM05D004487 ORTHO05D005483 6.2e-59 231.5 231 53.7
Thecc.01G110300 Theobroma cacao HOM05D004487 ORTHO05D005483 6.2e-59 231.5 214 56.5
Migut.H01422 Erythranthe guttata HOM05D004487 ORTHO05D005483 2.4e-58 229.6 234 54.7
TAR625G1215 Trochodendron aralioides HOM05D004487 ORTHO05D005483 2.4e-58 229.6 239 54.0
Atru.chr3.204 Acer truncatum HOM05D004487 ORTHO05D005483 4.0e-58 228.8 221 55.2
Nitab4.5_0001495g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 6.9e-58 228.0 233 53.6
Nn8g40276 Nelumbo nucifera HOM05D004487 ORTHO05D005483 2.0e-57 226.5 201 57.7
Ciclev10026392m.g Citrus clementina HOM05D004487 ORTHO05D005483 1.3e-56 223.8 226 53.1
Gorai.007G062000 Gossypium raimondii HOM05D004487 ORTHO05D005483 2.9e-56 222.6 239 52.3
MD01G1016500 Malus domestica HOM05D004487 ORTHO05D005483 4.9e-56 221.9 217 57.1
CAN.G861.28 Capsicum annuum HOM05D004487 ORTHO05D005483 6.4e-56 221.5 197 57.9
HanXRQChr07g0202331 Helianthus annuus HOM05D004487 ORTHO05D005483 1.1e-55 220.7 161 68.3
Nn2g14563 Nelumbo nucifera HOM05D004487 ORTHO05D005483 1.1e-55 220.7 218 56.0
FvH4_1g21950 Fragaria vesca HOM05D004487 ORTHO05D005483 5.4e-55 218.4 215 55.3
Gohir.A11G053300 Gossypium hirsutum HOM05D004487 ORTHO05D005483 5.4e-55 218.4 239 50.6
CsaV3_6G045820 Cucumis sativus L. HOM05D004487 ORTHO05D005483 7.1e-55 218.0 228 54.4
GSVIVG01022203001 Vitis vinifera HOM05D004487 ORTHO05D005483 7.1e-55 218.0 240 52.5
Haze_05964 Corylus avellana HOM05D004487 ORTHO05D005483 9.3e-55 217.6 265 48.7
Gohir.D11G056800 Gossypium hirsutum HOM05D004487 ORTHO05D005483 9.3e-55 217.6 218 53.2
Lalb_Chr11g0075201 Lupinus albus HOM05D004487 ORTHO05D005483 1.2e-54 217.2 235 52.8
Rhsim05G0180000 Rhododendron simsii HOM05D004487 ORTHO05D005483 1.2e-54 217.2 235 50.6
ClCG01G019130 Citrullus lanatus HOM05D004487 ORTHO05D005483 1.6e-54 216.9 224 54.9
CiPaw.04G093900 Carya illinoinensis HOM05D004487 ORTHO05D005483 2.1e-54 216.5 211 55.5
MELO3C007790.2 Cucumis melo HOM05D004487 ORTHO05D005483 2.1e-54 216.5 228 53.9
MSTRG.14740 Avicennia marina HOM05D004487 ORTHO05D005483 6.0e-54 214.9 236 50.8
Peaxi162Scf00171g00006 Petunia axillaris HOM05D004487 ORTHO05D005483 2.3e-53 213.0 243 49.8
MD15G1334800 Malus domestica HOM05D004487 ORTHO05D005483 3.0e-53 212.6 217 54.8
vmacro21317 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 3.0e-53 212.6 227 53.7
Sopen03g029710 Solanum pennellii HOM05D004487 ORTHO05D005483 3.9e-53 212.2 218 53.2
CANSAT01G2370 Cannabis sativa HOM05D004487 ORTHO05D005483 5.1e-53 211.8 216 53.7
FAN19G1427 Fragaria x ananassa HOM05D004487 ORTHO05D005483 5.1e-53 211.8 212 54.2
FAN23G0375 Fragaria x ananassa HOM05D004487 ORTHO05D005483 5.1e-53 211.8 212 54.2
Nitab4.5_0000477g0120 Nicotiana tabacum HOM05D004487 ORTHO05D005483 1.1e-52 210.7 231 52.8
FAN28G1272 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.9e-52 209.9 212 53.3
FAN28G1914 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.9e-52 209.9 212 53.3
Phvul.009G211400 Phaseolus vulgaris HOM05D004487 ORTHO05D005483 3.3e-52 209.1 232 52.2
RcHm_v2.0_Chr2g0115971 Rosa chinensis HOM05D004487 ORTHO05D005483 4.3e-52 208.8 216 53.2
Solyc03g019910.3 Solanum lycopersicum HOM05D004487 ORTHO05D005483 5.6e-52 208.4 218 52.8
PGSC0003DMG400015213 Solanum tuberosum HOM05D004487 ORTHO05D005483 5.6e-52 208.4 218 52.8
vmacro18624 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 1.3e-51 207.2 228 51.8
FAN26G2580 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.6e-51 206.8 212 53.8
CsaV3_5G036000 Cucumis sativus L. HOM05D004487 ORTHO05D005483 2.8e-51 206.1 239 52.3
FvH4_1g25670 Fragaria vesca HOM05D004487 ORTHO05D005483 6.2e-51 204.9 220 51.8
FAN19G3081 Fragaria x ananassa HOM05D004487 ORTHO05D005483 8.1e-51 204.5 222 51.8
CSS0025780 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 1.4e-50 203.8 202 55.9
Glyma.15G199500 Glycine max HOM05D004487 ORTHO05D005483 1.4e-50 203.8 228 51.3
PGR004G1100 Punica granatum HOM05D004487 ORTHO05D005483 4.0e-50 202.2 202 51.5
Cc02_g15410 Coffea canephora HOM05D004487 ORTHO05D005483 5.3e-50 201.8 227 50.7
Potri.007G085100 Populus trichocarpa HOM05D004487 ORTHO05D005483 6.9e-50 201.4 205 58.5
Prupe.8G078400 Prunus persica HOM05D004487 ORTHO05D005483 9.0e-50 201.1 214 54.7
Lj3g0008934 Lotus japonicus HOM05D004487 ORTHO05D005483 1.2e-49 200.7 237 49.4
AUR62005250 Chenopodium quinoa HOM05D004487 ORTHO05D005483 2.0e-49 199.9 211 48.8
AUR62000713 Chenopodium quinoa HOM05D004487 ORTHO05D005483 4.5e-49 198.7 199 50.8
arahy.Tifrunner.gnm1.ann1.10QJ8K Arachis hypogaea HOM05D004487 ORTHO05D005483 5.8e-49 198.4 225 50.2
arahy.Tifrunner.gnm1.ann1.0Q3DRY Arachis hypogaea HOM05D004487 ORTHO05D005483 7.6e-49 198.0 220 50.5
Ca_23004_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 7.6e-49 198.0 240 48.3
arahy.Tifrunner.gnm1.ann1.Z7G166 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.7e-48 196.8 221 51.1
EL10Ac4g09863 Beta vulgaris HOM05D004487 ORTHO05D005483 1.7e-48 196.8 200 51.0
Sabra07G0070400 Salix brachista HOM05D004487 ORTHO05D005483 1.7e-48 196.8 202 57.4
TWI74G0090 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 1.7e-48 196.8 240 47.9
Manes.12G140400 Manihot esculenta HOM05D004487 ORTHO05D005483 2.2e-48 196.4 201 54.7
arahy.Tifrunner.gnm1.ann1.NRP8RH Arachis hypogaea HOM05D004487 ORTHO05D005483 2.9e-48 196.1 223 50.2
Oeu040918.3 Olea europaea HOM05D004487 ORTHO05D005483 2.9e-48 196.1 287 42.9
Glyma.09G092600 Glycine max HOM05D004487 ORTHO05D005483 4.9e-48 195.3 229 49.3
TPR.G33715 Trifolium pratense HOM05D004487 ORTHO05D005483 4.9e-48 195.3 201 54.2
Eucgr.I00528 Eucalyptus grandis HOM05D004487 ORTHO05D005483 6.4e-48 194.9 246 45.5
Gohir.1Z049552 Gossypium hirsutum HOM05D004487 ORTHO05D005483 8.4e-48 194.5 179 55.3
DCAR_014253 Daucus carota HOM05D004487 ORTHO05D005483 1.4e-47 193.7 236 47.9
Aa31LG6G15640 Aethionema arabicum HOM05D004487 ORTHO05D005483 1.9e-47 193.4 236 47.9
Ca_25628_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 4.6e-46 188.7 234 46.2
unitig_22.g6757 Utricularia gibba HOM05D004487 ORTHO05D005483 6.0e-46 188.3 212 49.5
Lj2A942G27 Lonicera japonica HOM05D004487 ORTHO05D005483 7.9e-46 188.0 207 56.0
SGA_v2.0_scaffold106G30591 Striga asiatica HOM05D004487 ORTHO05D005483 1.0e-45 187.6 196 54.6
Hma1.2p1_0486F.1_g163280 Hydrangea macrophylla HOM05D004487 ORTHO05D005483 1.3e-45 187.2 201 50.2
VMungo1309G0247 Vigna mungo HOM05D004487 ORTHO05D005483 1.3e-45 187.2 227 47.6
arahy.Tifrunner.gnm1.ann1.32WU9K Arachis hypogaea HOM05D004487 ORTHO05D005483 1.8e-45 186.8 192 52.1
MELO3C012399.2 Cucumis melo HOM05D004487 ORTHO05D005483 3.0e-45 186.0 255 47.5
MBI04_g31212_MAGBIO Magnolia biondii HOM05D004487 ORTHO05D005483 5.6e-44 181.8 184 52.7
TAR626G1474 Trochodendron aralioides HOM05D004487 ORTHO05D005483 9.6e-44 181.0 236 46.6
arahy.Tifrunner.gnm1.ann1.7417N6 Arachis hypogaea HOM05D004487 ORTHO05D005483 2.8e-43 179.5 222 46.8
Prupe.6G176600 Prunus persica HOM05D004487 ORTHO05D005483 3.6e-43 179.1 240 47.1
Actinidia08329 Actinidia chinensis HOM05D004487 ORTHO05D005483 4.8e-43 178.7 219 48.9
Aqoxy2G03854 Aquilegia oxysepala HOM05D004487 ORTHO05D005483 1.1e-42 177.6 201 53.2
arahy.Tifrunner.gnm1.ann1.S1NDRU Arachis hypogaea HOM05D004487 ORTHO05D005483 1.1e-42 177.6 222 46.8
AL7G11780 Arabidopsis lyrata HOM05D004487 ORTHO05D005483 2.4e-42 176.4 231 45.9
Sc16g0008840 Simmondsia chinensis HOM05D004487 ORTHO05D005483 5.3e-42 175.3 195 49.2
Nitab4.5_0007222g0010 Nicotiana tabacum HOM05D004487 ORTHO05D005483 1.2e-41 174.1 231 48.5
ClCG05G021300 Citrullus lanatus HOM05D004487 ORTHO05D005483 2.0e-41 173.3 234 47.0
Carub.0007s0150 Capsella rubella HOM05D004487 ORTHO05D005483 1.3e-40 170.6 235 45.5
arahy.Tifrunner.gnm1.ann1.Y72RXW Arachis hypogaea HOM05D004487 ORTHO05D005483 1.7e-40 170.2 219 46.6
Psat2g176760 Pisum sativum HOM05D004487 ORTHO05D005483 1.9e-39 166.8 195 48.2
THA.LOC104807718 Tarenaya hassleriana HOM05D004487 ORTHO05D005483 1.9e-39 166.8 216 47.2
Ah.04g161200 Amaranthus hybridus HOM05D004487 ORTHO05D005483 7.1e-39 164.9 212 42.9
Sp7g04740 Schrenkiella parvula HOM05D004487 ORTHO05D005483 3.5e-38 162.5 235 43.4
CARHR215520 Cardamine hirsuta HOM05D004487 ORTHO05D005483 6.0e-38 161.8 234 42.3
AT4G39630 Arabidopsis thaliana HOM05D004487 ORTHO05D005483 1.3e-37 160.6 226 44.2
Lj2A929T16 Lonicera japonica HOM05D004487 ORTHO05D005483 1.3e-37 160.6 239 46.0
Potri.005G082500 Populus trichocarpa HOM05D004487 ORTHO05D005483 1.3e-37 160.6 236 45.3
arahy.Tifrunner.gnm1.ann1.9RVJ5A Arachis hypogaea HOM05D004487 ORTHO05D005483 1.8e-37 160.2 212 44.3
Thhalv10027902m.g Eutrema salsugineum HOM05D004487 ORTHO05D005483 1.8e-37 160.2 239 43.1
arahy.Tifrunner.gnm1.ann1.L7ETT7 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.9e-36 156.8 165 49.7
TPR.G36682 Trifolium pratense HOM05D005330 ORTHO05D006489 3.3e-36 156.0 198 48.5
Actinidia33369 Actinidia chinensis HOM05D004487 ORTHO05D005483 4.3e-36 155.6 229 43.2
arahy.Tifrunner.gnm1.ann1.I45DC0 Arachis hypogaea HOM05D004487 ORTHO05D005483 9.6e-36 154.5 215 42.3
ATR0210G008 Amborella trichopoda HOM05D004487 ORTHO05D005483 2.8e-35 152.9 243 42.0
C04p44290 Brassica napus HOM05D004487 ORTHO05D005483 1.4e-34 150.6 229 44.1
HPP92_005242 Vanilla planifolia HOM05D004487 ORTHO05D005483 2.4e-34 149.8 195 45.1
Lj4A903G12 Lonicera japonica HOM05D004487 ORTHO05D005483 6.9e-34 148.3 182 51.6
BcaC02g09572 Brassica carinata HOM05D004487 ORTHO05D005483 9.0e-34 147.9 232 43.1
A04p10610 Brassica napus HOM05D004487 ORTHO05D005483 7.6e-33 144.8 228 43.0
BcaB06g27071 Brassica carinata HOM05D004487 ORTHO05D005483 1.0e-32 144.4 232 42.2
BolC4t26003H Brassica oleracea HOM05D004487 ORTHO05D005483 1.0e-32 144.4 238 42.0
Os08g0290400 Oryza sativa ssp. japonica HOM05D004487 ORTHO05D005483 3.8e-32 142.5 224 40.2
BraA04t16724Z Brassica rapa HOM05D004487 ORTHO05D005483 4.9e-32 142.1 227 42.7
CDE04G3174 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 9.3e-31 137.9 197 44.7
Hma1.2p1_0375F.1_g138570 Hydrangea macrophylla HOM05D004487 ORTHO05D005483 1.6e-30 137.1 121 57.0
CARHR247100 Cardamine hirsuta HOM05D004487 ORTHO05D005483 3.5e-30 136.0 230 42.2
CSS0002847 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 1.3e-29 134.0 95 71.6
Lj6g0018564 Lotus japonicus HOM05D004487 ORTHO05D005483 6.7e-29 131.7 95 65.3
Dinv13358 Davidia involucrata HOM05D004487 ORTHO05D005483 4.3e-28 129.0 174 46.6
Sabra05G0067500 Salix brachista HOM05D004487 ORTHO05D005483 5.7e-28 128.6 197 43.7
SEGI_02201 Sequoiadendron giganteum HOM05D004487 ORTHO05D005483 8.2e-27 124.8 206 39.8
Sp7g36260 Schrenkiella parvula HOM05D004487 ORTHO05D005483 6.9e-26 121.7 220 39.1
arahy.Tifrunner.gnm1.ann1.4M30AQ Arachis hypogaea HOM05D004487 ORTHO05D005483 2.6e-25 119.8 166 44.0
Dinv05687 Davidia involucrata HOM05D004487 ORTHO05D005483 1.7e-24 117.1 172 44.8
TWI53G0384 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 1.7e-24 117.1 97 57.7
SHI54251 Sapria himalayana HOM05D004487 ORTHO05D005483 2.9e-24 116.3 217 38.2
Zm00001eb192330 Zea mays HOM05D004487 ORTHO05D005483 3.8e-24 115.9 190 36.8
CDE04G3300 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 4.6e-22 109.0 226 37.2
arahy.Tifrunner.gnm1.ann1.ZIF87W Arachis hypogaea HOM05D004487 ORTHO05D005483 3.7e-19 99.4 201 35.8
Sed0026038 Sechium edule HOM05D004487 ORTHO05D005483 4.8e-19 99.0 168 41.7
CDE06G2627 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 4.2e-15 85.9 152 36.8
FAN26G0673 Fragaria x ananassa HOM05D004487 ORTHO05D005483 2.1e-14 83.6 136 39.7
Oeu043116.1 Olea europaea HOM05D004487 ORTHO05D005483 7.9e-14 81.6 153 34.6
arahy.Tifrunner.gnm1.ann1.02EUR6 Arachis hypogaea HOM05D004487 ORTHO05D005483 5.1e-13 79.0 118 37.3
SGA_v2.0_scaffold83G26423 Striga asiatica HOM05D004487 ORTHO05D005483 9.7e-12 74.7 115 39.1
Lalb_Chr12g0203581 Lupinus albus HOM05D004487 ORTHO05D005483 4.8e-11 72.4 219 32.4
arahy.Tifrunner.gnm1.ann1.3C43J1 Arachis hypogaea HOM05D004487 ORTHO05D005483 6.3e-11 72.0 83 49.4
arahy.Tifrunner.gnm1.ann1.RJV3W7 Arachis hypogaea HOM05D004487 ORTHO05D005483 8.2e-11 71.6 83 49.4
CSS0015836 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 3.1e-10 69.7 39 87.2
CSS0022213 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 3.1e-10 69.7 39 87.2
ATR0730G218 Amborella trichopoda HOM05D004487 ORTHO05D005483 4.1e-10 69.3 120 38.3
Psat4g139880 Pisum sativum HOM05D004487 ORTHO05D005483 2.0e-09 67.0 149 34.2
Psat4g139920 Pisum sativum HOM05D004487 ORTHO05D005483 7.7e-09 65.1 151 33.8
arahy.Tifrunner.gnm1.ann1.94164M Arachis hypogaea HOM05D004487 ORTHO05D005483 1.0e-08 64.7 67 52.2
arahy.Tifrunner.gnm1.ann1.FJ4QJG Arachis hypogaea HOM05D004487 ORTHO05D005483 2.9e-08 63.2 84 46.4
BcaNung00884 Brassica carinata HOM05D004487 ORTHO05D032747 2.5e-07 60.1 60 53.3
arahy.Tifrunner.gnm1.ann1.PFH739 Arachis hypogaea HOM05D004487 ORTHO05D005483 3.6e-06 56.2 94 37.2
Mapoly0076s0033 Marchantia polymorpha HOM05D019097 ORTHO05D019635 4.7e-06 55.8 198 26.8
arahy.Tifrunner.gnm1.ann1.PL6VNF Arachis hypogaea HOM05D004487 ORTHO05D005483 6.1e-06 55.5 94 37.2


User provided reference genes

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