Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA238G1611 Erigeron canadensis HOM05D004462 ORTHO05D005231 4.5e-77 291.2 147 100.0
HanXRQChr12g0365631 Helianthus annuus HOM05D004462 ORTHO05D005231 8.7e-65 250.4 147 82.3
Lsat_1_v5_gn_2_72161 Lactuca sativa HOM05D004462 ORTHO05D005231 5.9e-61 237.7 144 77.1
HanXRQChr14g0443511 Helianthus annuus HOM05D004462 ORTHO05D005231 1.7e-60 236.1 147 76.2
Lsat_1_v5_gn_2_72121 Lactuca sativa HOM05D004462 ORTHO05D005231 3.0e-57 225.3 145 71.7
Psat2g044120 Pisum sativum HOM05D004462 ORTHO05D005231 6.5e-52 207.6 144 68.1
Medtr5g076470 Medicago truncatula HOM05D004462 ORTHO05D005231 6.7e-49 197.6 144 63.9
Nitab4.5_0000483g0160 Nicotiana tabacum HOM05D004462 ORTHO05D005231 6.7e-49 197.6 147 63.9
Peaxi162Scf00344g01910 Petunia axillaris HOM05D004462 ORTHO05D005231 1.5e-48 196.4 147 61.9
CAN.G809.94 Capsicum annuum HOM05D004462 ORTHO05D005231 2.6e-48 195.7 144 61.1
Ca_17052_v3 Cicer arietinum L. HOM05D004462 ORTHO05D005231 4.4e-48 194.9 144 61.8
Lalb_Chr10g0104001 Lupinus albus HOM05D004462 ORTHO05D005231 9.7e-48 193.7 145 60.0
TWI53G1401 Tripterygium wilfordii HOM05D004462 ORTHO05D005231 1.7e-47 193.0 147 62.6
PSO782G5040 Papaver somniferum HOM05D004462 ORTHO05D005231 2.2e-47 192.6 145 61.4
GSVIVG01001479001 Vitis vinifera HOM05D004462 ORTHO05D005231 2.8e-47 192.2 142 61.3
PGR044G0250 Punica granatum HOM05D004462 ORTHO05D005231 4.8e-47 191.4 144 64.6
RcHm_v2.0_Chr3g0491741 Rosa chinensis HOM05D004462 ORTHO05D005231 4.8e-47 191.4 143 60.8
TPR.G5341 Trifolium pratense HOM05D004462 ORTHO05D005231 4.8e-47 191.4 143 62.2
PSO063G2986 Papaver somniferum HOM05D004462 ORTHO05D005231 6.3e-47 191.0 145 60.7
RcHm_v2.0_Chr3g0491701 Rosa chinensis HOM05D004462 ORTHO05D005231 8.2e-47 190.7 143 60.1
PGSC0003DMG400019728 Solanum tuberosum HOM05D004462 ORTHO05D005231 8.2e-47 190.7 147 61.2
Hma1.2p1_0085F.1_g043860 Hydrangea macrophylla HOM05D004462 ORTHO05D005231 1.1e-46 190.3 147 61.2
Carub.0002s1171 Capsella rubella HOM05D004462 ORTHO05D005231 1.4e-46 189.9 144 60.4
Actinidia32995 Actinidia chinensis HOM05D004462 ORTHO05D005231 1.8e-46 189.5 140 62.1
LjContig00141g0019021 Lotus japonicus HOM05D004462 ORTHO05D005231 2.4e-46 189.1 144 61.1
QL02p063959 Quercus lobata HOM05D004462 ORTHO05D005231 2.4e-46 189.1 138 63.8
C04p44160 Brassica napus HOM05D004462 ORTHO05D005231 5.3e-46 188.0 144 60.4
Duzib128G1697 Durio zibethinus HOM05D004462 ORTHO05D005231 5.3e-46 188.0 142 58.5
RcHm_v2.0_Chr3g0491671 Rosa chinensis HOM05D004462 ORTHO05D005231 5.3e-46 188.0 143 59.4
Thecc.08G108000 Theobroma cacao HOM05D004462 ORTHO05D005231 5.3e-46 188.0 141 60.3
AT1G65820 Arabidopsis thaliana HOM05D004462 ORTHO05D005231 7.0e-46 187.6 147 59.2
BcaC02g09558 Brassica carinata HOM05D004462 ORTHO05D005231 7.0e-46 187.6 144 60.4
AUR62037507 Chenopodium quinoa HOM05D004462 ORTHO05D005231 9.1e-46 187.2 140 62.9
arahy.Tifrunner.gnm1.ann1.TN4V22 Arachis hypogaea HOM05D004462 ORTHO05D005231 1.2e-45 186.8 144 62.5
Duzib138G0229 Durio zibethinus HOM05D004462 ORTHO05D005231 1.2e-45 186.8 142 57.7
A04p10520 Brassica napus HOM05D004462 ORTHO05D005231 1.5e-45 186.4 144 59.7
Ciclev10013005m.g Citrus clementina HOM05D004462 ORTHO05D005231 1.5e-45 186.4 147 59.9
Dinv28268 Davidia involucrata HOM05D004462 ORTHO05D005231 1.5e-45 186.4 147 61.9
Sopen02g026070 Solanum pennellii HOM05D004462 ORTHO05D005231 2.0e-45 186.0 147 59.9
Eucgr.F02921 Eucalyptus grandis HOM05D004462 ORTHO05D005231 2.6e-45 185.7 139 61.9
Migut.K01204 Erythranthe guttata HOM05D004462 ORTHO05D005231 3.4e-45 185.3 147 59.2
Sp7g05300 Schrenkiella parvula HOM05D004462 ORTHO05D005231 3.4e-45 185.3 144 58.3
BcaB05g24136 Brassica carinata HOM05D004462 ORTHO05D005231 4.5e-45 184.9 144 59.0
A06p23000 Brassica napus HOM05D004462 ORTHO05D005231 4.5e-45 184.9 144 59.0
CARHR215890 Cardamine hirsuta HOM05D004462 ORTHO05D005231 4.5e-45 184.9 144 59.0
AUR62004745 Chenopodium quinoa HOM05D004462 ORTHO05D005231 4.5e-45 184.9 140 61.4
Haze_14345 Corylus avellana HOM05D004462 ORTHO05D005231 4.5e-45 184.9 144 57.6
COL.COLO4_16416 Corchorus olitorius HOM05D004462 ORTHO05D005231 5.9e-45 184.5 141 59.6
Oeu002679.1 Olea europaea HOM05D004462 ORTHO05D005231 5.9e-45 184.5 143 58.7
BcaB04g19159 Brassica carinata HOM05D004462 ORTHO05D005231 7.7e-45 184.1 144 59.0
Thhalv10027981m.g Eutrema salsugineum HOM05D004462 ORTHO05D005231 7.7e-45 184.1 144 59.0
FvH4_1g30090 Fragaria vesca HOM05D004462 ORTHO05D005231 7.7e-45 184.1 143 57.3
FAN19G2026 Fragaria x ananassa HOM05D004462 ORTHO05D005231 7.7e-45 184.1 143 57.3
BcaC03g14720 Brassica carinata HOM05D004462 ORTHO05D005231 1.0e-44 183.7 144 59.0
C02p21630 Brassica napus HOM05D004462 ORTHO05D005231 1.0e-44 183.7 144 59.0
AL2G23110 Arabidopsis lyrata HOM05D004462 ORTHO05D005231 1.3e-44 183.3 147 57.8
MSTRG.15620 Avicennia marina HOM05D004462 ORTHO05D005231 1.3e-44 183.3 144 60.4
A02p13370 Brassica napus HOM05D004462 ORTHO05D005231 1.7e-44 183.0 144 59.0
MBI12_g42585_MAGBIO Magnolia biondii HOM05D004462 ORTHO05D005231 1.7e-44 183.0 138 60.1
EL10Ac4g08901 Beta vulgaris HOM05D004462 ORTHO05D005231 2.2e-44 182.6 140 60.7
Cfa007736 Carpinus fangiana HOM05D004462 ORTHO05D005231 2.2e-44 182.6 144 56.9
FAN23G0373 Fragaria x ananassa HOM05D004462 ORTHO05D005231 2.2e-44 182.6 143 57.3
Manes.02G082400 Manihot esculenta HOM05D004462 ORTHO05D005231 2.2e-44 182.6 138 62.3
Sp5g20770 Schrenkiella parvula HOM05D004462 ORTHO05D005231 2.2e-44 182.6 144 58.3
Solyc02g081430.3 Solanum lycopersicum HOM05D004462 ORTHO05D005231 2.2e-44 182.6 147 58.5
Gohir.A08G037800 Gossypium hirsutum HOM05D004462 ORTHO05D005231 2.9e-44 182.2 141 60.3
Prupe.3G165500 Prunus persica HOM05D004462 ORTHO05D005231 3.8e-44 181.8 144 60.4
SalBow5G4757 Salvia bowleyana HOM05D004462 ORTHO05D005231 3.8e-44 181.8 147 58.5
THA.LOC104805662 Tarenaya hassleriana HOM05D004462 ORTHO05D005231 3.8e-44 181.8 143 59.4
Nn4g24875 Nelumbo nucifera HOM05D004462 ORTHO05D005231 6.5e-44 181.0 142 59.2
Gohir.D08G048100 Gossypium hirsutum HOM05D004462 ORTHO05D005231 8.5e-44 180.6 141 60.3
Gorai.004G047600 Gossypium raimondii HOM05D004462 ORTHO05D005231 8.5e-44 180.6 141 60.3
Sc09g0004600 Simmondsia chinensis HOM05D004462 ORTHO05D005231 1.1e-43 180.3 138 58.7
Cc00_g30600 Coffea canephora HOM05D004462 ORTHO05D005231 1.4e-43 179.9 147 61.2
Cc02_g03200 Coffea canephora HOM05D004462 ORTHO05D005231 1.4e-43 179.9 147 61.2
Actinidia28772 Actinidia chinensis HOM05D004462 ORTHO05D005231 1.9e-43 179.5 147 57.8
CANSAT35G0603 Cannabis sativa HOM05D004462 ORTHO05D005231 1.9e-43 179.5 142 57.7
Os03g0709000 Oryza sativa ssp. japonica HOM05D004462 ORTHO05D005231 4.2e-43 178.3 137 58.4
Atru.chr1.1966 Acer truncatum HOM05D004462 ORTHO05D005231 5.5e-43 177.9 141 57.4
MD09G1269000 Malus domestica HOM05D004462 ORTHO05D005231 5.5e-43 177.9 144 56.2
Sed0028045 Sechium edule HOM05D004462 ORTHO05D005231 5.5e-43 177.9 143 58.0
vmacro18490 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 5.5e-43 177.9 147 57.1
HPP92_016581 Vanilla planifolia HOM05D004462 ORTHO05D005231 9.4e-43 177.2 144 59.0
BraA02t06395Z Brassica rapa HOM05D004462 ORTHO05D005231 1.2e-42 176.8 149 57.0
Lalb_Chr04g0251561 Lupinus albus HOM05D004462 ORTHO05D005231 1.2e-42 176.8 144 56.2
Nn6g35012 Nelumbo nucifera HOM05D004462 ORTHO05D005231 1.2e-42 176.8 141 59.6
HPP92_011089 Vanilla planifolia HOM05D004462 ORTHO05D005231 1.6e-42 176.4 137 56.9
BraA04t16718Z Brassica rapa HOM05D004462 ORTHO05D005231 2.1e-42 176.0 163 53.4
CARHR057680 Cardamine hirsuta HOM05D004462 ORTHO05D005231 2.1e-42 176.0 141 57.4
Potri.017G140900 Populus trichocarpa HOM05D004462 ORTHO05D005231 2.1e-42 176.0 145 57.9
CiPaw.03G079700 Carya illinoinensis HOM05D004462 ORTHO05D005231 2.7e-42 175.6 144 57.6
FAN28G0360 Fragaria x ananassa HOM05D004462 ORTHO05D005231 2.7e-42 175.6 134 56.7
ClCG03G008870 Citrullus lanatus HOM05D004462 ORTHO05D005231 3.6e-42 175.3 141 58.9
CsaV3_5G023890 Cucumis sativus L. HOM05D004462 ORTHO05D005231 3.6e-42 175.3 141 58.9
DCAR_003393 Daucus carota HOM05D004462 ORTHO05D005231 3.6e-42 175.3 147 59.2
Hund06859 Selenicereus undatus HOM05D004462 ORTHO05D005231 3.6e-42 175.3 122 62.3
Gohir.A07G176700 Gossypium hirsutum HOM05D004462 ORTHO05D005231 4.7e-42 174.9 141 56.7
MD17G1267400 Malus domestica HOM05D004462 ORTHO05D005231 4.7e-42 174.9 144 56.9
Sabra04G0051800 Salix brachista HOM05D004462 ORTHO05D005231 4.7e-42 174.9 129 60.5
ATR0753G103 Amborella trichopoda HOM05D004462 ORTHO05D005231 6.1e-42 174.5 139 58.3
Gohir.D07G184000 Gossypium hirsutum HOM05D004462 ORTHO05D005231 1.0e-41 173.7 141 56.7
Gorai.001G204400 Gossypium raimondii HOM05D004462 ORTHO05D005231 1.0e-41 173.7 141 56.7
BolC2t08300H Brassica oleracea HOM05D004462 ORTHO05D005231 1.4e-41 173.3 160 53.1
CiPaw.04G050400 Carya illinoinensis HOM05D004462 ORTHO05D005231 1.4e-41 173.3 139 57.6
HPP92_011106 Vanilla planifolia HOM05D004462 ORTHO05D005231 1.4e-41 173.3 137 56.2
vmacro20446 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 5.2e-41 171.4 145 55.9
Nn4g24876 Nelumbo nucifera HOM05D004462 ORTHO05D005231 1.1e-40 170.2 141 56.7
Aqoxy3G04063 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 1.5e-40 169.9 140 55.0
PSO210G6210 Papaver somniferum HOM05D004462 ORTHO05D005231 1.5e-40 169.9 120 62.5
SMO115G0120 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 2.0e-40 169.5 137 56.2
Aa31LG2G2630 Aethionema arabicum HOM05D000188 ORTHO05D000362 2.6e-40 169.1 172 48.8
CSS0041519 Camellia sinensis var. sinensis HOM05D004462 ORTHO05D005231 2.6e-40 169.1 147 56.5
arahy.Tifrunner.gnm1.ann1.3DVS1U Arachis hypogaea HOM05D004462 ORTHO05D005231 4.4e-40 168.3 120 62.5
Cpa.g.c42729 Carica papaya HOM05D004462 ORTHO05D005231 4.4e-40 168.3 124 58.1
Sed0009749 Sechium edule HOM05D004462 ORTHO05D005231 7.4e-40 167.5 143 53.8
arahy.Tifrunner.gnm1.ann1.D1IGUM Arachis hypogaea HOM05D004462 ORTHO05D005231 2.2e-39 166.0 120 60.8
CDE05G2284 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 2.2e-39 166.0 138 55.8
Sabra17G0118400 Salix brachista HOM05D004462 ORTHO05D005231 2.2e-39 166.0 143 55.2
Carub.0007s3236 Capsella rubella HOM05D004462 ORTHO05D005231 2.8e-39 165.6 145 53.1
DCAR_014136 Daucus carota HOM05D004462 ORTHO05D005231 6.3e-39 164.5 143 53.8
Rhsim08G0023100 Rhododendron simsii HOM05D004462 ORTHO05D005231 1.4e-38 163.3 118 61.9
Zm00001eb054680 Zea mays HOM05D004462 ORTHO05D005231 5.3e-38 161.4 124 60.5
Aqoxy3G04064 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 4.5e-37 158.3 144 52.1
BolC4t25991H Brassica oleracea HOM05D004462 ORTHO05D005231 4.5e-37 158.3 144 52.8
DCAR_003392 Daucus carota HOM05D004462 ORTHO05D005231 4.5e-37 158.3 145 54.5
arahy.Tifrunner.gnm1.ann1.U75ZTX Arachis hypogaea HOM05D004462 ORTHO05D005231 7.7e-37 157.5 118 58.5
vmacro18489 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 2.9e-36 155.6 111 61.3
CDE06G2132 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 3.8e-36 155.2 138 52.9
MELO3C022821.2 Cucumis melo HOM05D004462 ORTHO05D005231 5.0e-36 154.8 118 59.3
DCAR_003394 Daucus carota HOM05D004462 ORTHO05D005231 5.0e-36 154.8 143 53.1
Pp3c13_5830 Physcomitrium patens HOM05D004462 ORTHO05D005231 3.3e-32 142.1 126 53.2
Pp3c13_5831 Physcomitrium patens HOM05D004462 ORTHO05D005231 3.3e-32 142.1 126 53.2
Mapoly0075s0081 Marchantia polymorpha HOM05D004462 ORTHO05D005231 9.7e-32 140.6 134 49.3
arahy.Tifrunner.gnm1.ann1.UF2MTZ Arachis hypogaea HOM05D004462 ORTHO05D005231 2.2e-31 139.4 144 51.4
MD17G1267600 Malus domestica HOM05D004462 ORTHO05D005231 5.3e-30 134.8 119 53.8
FAN26G3346 Fragaria x ananassa HOM05D004462 ORTHO05D005231 1.9e-27 126.3 98 57.1
Pp3c12_2960 Physcomitrium patens HOM05D004462 ORTHO05D005231 4.7e-26 121.7 116 50.0
CBR_g266 Chara braunii HOM05D004462 ORTHO05D005231 8.0e-26 120.9 137 46.7
AagrBONN_evm.TU.Sc2ySwM_117.1823 Anthoceros agrestis HOM05D004462 ORTHO05D005231 2.0e-24 116.3 141 44.0
DCAR_010504 Daucus carota HOM05D004462 ORTHO05D005231 2.0e-24 116.3 99 53.5
CBR_g21744 Chara braunii HOM05D004462 ORTHO05D005231 1.3e-23 113.6 141 42.6
DCAR_007795 Daucus carota HOM05D004462 ORTHO05D005231 1.7e-23 113.2 99 53.5
unitig_748.g8625 Utricularia gibba HOM05D001875 ORTHO05D002019 2.2e-23 112.8 86 61.6
Pp3c13_5870 Physcomitrium patens HOM05D004462 ORTHO05D005231 3.7e-23 112.1 128 49.2
Lsat_1_v5_gn_5_96540 Lactuca sativa HOM05D004462 ORTHO05D005231 4.8e-23 111.7 95 62.1
Mapoly0056s0049 Marchantia polymorpha HOM05D004462 ORTHO05D005231 1.8e-22 109.8 133 45.1
SMO337G0081 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 1.2e-21 107.1 139 41.0
Cre12.g559800 Chlamydomonas reinhardtii HOM05D004462 ORTHO05D005231 1.6e-21 106.7 137 44.5
DCAR_028827 Daucus carota HOM05D000012 ORTHO05D000567 5.9e-21 104.8 98 48.0
Pp3c6_29390 Physcomitrium patens HOM05D004462 ORTHO05D005231 7.7e-21 104.4 131 42.7
CBR_g38628 Chara braunii HOM05D004462 ORTHO05D005231 3.8e-20 102.1 143 39.2
HPP92_009441 Vanilla planifolia HOM05D004462 ORTHO05D005231 6.1e-18 94.7 100 44.0
MCO14G359 Micromonas commoda HOM05D004462 ORTHO05D005231 1.0e-17 94.0 112 45.5
MCO08G122 Micromonas commoda HOM05D004462 ORTHO05D005231 3.7e-15 85.5 131 39.7
AagrBONN_evm.TU.Sc2ySwM_228.473 Anthoceros agrestis HOM05D004462 ORTHO05D005231 2.4e-14 82.8 87 43.7
DCAR_011767 Daucus carota HOM05D000532 ORTHO05D002414 4.5e-13 78.6 66 50.0
DCAR_006132 Daucus carota HOM05D004462 ORTHO05D005231 7.8e-13 77.8 59 55.9
C04p44040 Brassica napus HOM05D004462 ORTHO05D005231 1.0e-12 77.4 53 64.2
C04p44070 Brassica napus HOM05D004462 ORTHO05D005231 1.0e-12 77.4 53 64.2
C04p44110 Brassica napus HOM05D004462 ORTHO05D005231 1.0e-12 77.4 53 64.2
BcaC02g09555 Brassica carinata HOM05D000188 ORTHO05D005231 1.3e-12 77.0 53 64.2
GSVIVG01020320001 Vitis vinifera HOM05D004462 ORTHO05D005231 3.8e-12 75.5 55 56.4
PRCOL_00004990 Prasinoderma coloniale HOM05D004462 ORTHO05D005231 1.5e-11 73.6 121 42.1
HanXRQChr11g0343111 Helianthus annuus HOM05D004462 ORTHO05D005231 3.3e-11 72.4 43 72.1
TAR371G1025 Trochodendron aralioides HOM05D004462 ORTHO05D005231 1.2e-08 63.9 49 59.2
Rhsim03G0265300 Rhododendron simsii HOM05D001472 ORTHO05D002655 9.2e-06 54.3 42 66.7


User provided reference genes

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