Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA238G1521 Erigeron canadensis HOM05D004446 ORTHO05D005346 9.3e-98 360.1 175 100.0
HanXRQChr06g0183261 Helianthus annuus HOM05D004446 ORTHO05D005346 1.5e-76 289.7 144 97.2
HanXRQChr14g0434271 Helianthus annuus HOM05D004446 ORTHO05D005346 1.0e-75 287.0 144 95.8
Lsat_1_v5_gn_2_41880 Lactuca sativa HOM05D004446 ORTHO05D005346 1.1e-74 283.5 143 94.4
DCAR_027363 Daucus carota HOM05D004446 ORTHO05D005346 1.2e-73 280.0 144 92.4
MSTRG.24643 Avicennia marina HOM05D004446 ORTHO05D005346 7.9e-73 277.3 144 90.3
Lsat_1_v5_gn_2_41141 Lactuca sativa HOM05D004446 ORTHO05D005346 1.4e-72 276.6 141 93.6
Aqoxy3G02680 Aquilegia oxysepala HOM05D004446 ORTHO05D005346 1.8e-72 276.2 144 91.0
vmacro00521 Vaccinium macrocarpon HOM05D004446 ORTHO05D005346 1.8e-72 276.2 144 90.3
AUR62035332 Chenopodium quinoa HOM05D004446 ORTHO05D005346 3.9e-72 275.0 144 89.6
Nn5g27558 Nelumbo nucifera HOM05D004446 ORTHO05D005346 6.7e-72 274.2 153 85.0
Nn2g14612 Nelumbo nucifera HOM05D004446 ORTHO05D005346 2.0e-71 272.7 144 89.6
Hund19262 Selenicereus undatus HOM05D004446 ORTHO05D005346 2.0e-71 272.7 144 88.2
TAR362G0142 Trochodendron aralioides HOM05D004446 ORTHO05D005346 2.0e-71 272.7 144 88.9
CSS0043422 Camellia sinensis var. sinensis HOM05D004446 ORTHO05D005346 2.6e-71 272.3 144 88.9
CSS0044163 Camellia sinensis var. sinensis HOM05D004446 ORTHO05D005346 2.6e-71 272.3 144 88.9
Actinidia35938 Actinidia chinensis HOM05D004446 ORTHO05D005346 4.4e-71 271.6 144 88.2
Thecc.04G215500 Theobroma cacao HOM05D004446 ORTHO05D005346 4.4e-71 271.6 144 89.6
Potri.001G054500 Populus trichocarpa HOM05D004446 ORTHO05D005346 5.7e-71 271.2 144 89.6
COL.COLO4_05729 Corchorus olitorius HOM05D004446 ORTHO05D005346 7.4e-71 270.8 144 89.6
TAR365G0553 Trochodendron aralioides HOM05D004446 ORTHO05D005346 9.7e-71 270.4 144 88.9
Glyma.20G079400 Glycine max HOM05D004446 ORTHO05D005346 1.3e-70 270.0 144 87.5
SGA_v2.0_scaffold155G37240 Striga asiatica HOM05D004446 ORTHO05D005346 1.3e-70 270.0 144 88.2
Atru.chr4.1819 Acer truncatum HOM05D004446 ORTHO05D005346 1.7e-70 269.6 144 87.5
CiPaw.02G127900 Carya illinoinensis HOM05D004446 ORTHO05D005346 1.7e-70 269.6 144 87.5
CDE04G3627 Ceratophyllum demersum HOM05D004446 ORTHO05D005346 1.7e-70 269.6 144 88.2
ClCG06G007390 Citrullus lanatus HOM05D004446 ORTHO05D005346 2.2e-70 269.2 144 88.2
CsaV3_2G012290 Cucumis sativus L. HOM05D004446 ORTHO05D005346 2.2e-70 269.2 144 88.2
PSO782G0825 Papaver somniferum HOM05D004446 ORTHO05D005346 2.2e-70 269.2 144 88.2
TAR633G2153 Trochodendron aralioides HOM05D004446 ORTHO05D005346 2.2e-70 269.2 142 89.4
Cpa.g.sc59.66 Carica papaya HOM05D004446 ORTHO05D005346 2.8e-70 268.9 144 87.5
FvH4_4g05410 Fragaria vesca HOM05D004446 ORTHO05D005346 2.8e-70 268.9 144 88.2
FAN07G2016 Fragaria x ananassa HOM05D004446 ORTHO05D005346 2.8e-70 268.9 144 88.2
FAN12G2493 Fragaria x ananassa HOM05D004446 ORTHO05D005346 2.8e-70 268.9 144 88.2
FAN12G4338 Fragaria x ananassa HOM05D004446 ORTHO05D005346 2.8e-70 268.9 144 88.2
MD16G1234000 Malus domestica HOM05D004446 ORTHO05D005346 2.8e-70 268.9 144 87.5
Prupe.1G056200 Prunus persica HOM05D004446 ORTHO05D005346 2.8e-70 268.9 144 88.9
Ciclev10006172m.g Citrus clementina HOM05D004446 ORTHO05D005346 3.7e-70 268.5 144 88.2
Sed0017441 Sechium edule HOM05D004446 ORTHO05D005346 3.7e-70 268.5 144 86.1
EL10Ac3g06748 Beta vulgaris HOM05D004446 ORTHO05D005346 4.8e-70 268.1 144 87.5
SalBow2G1310 Salvia bowleyana HOM05D004446 ORTHO05D005346 4.8e-70 268.1 144 86.8
MD13G1228700 Malus domestica HOM05D004446 ORTHO05D005346 6.3e-70 267.7 144 87.5
Lalb_Chr01g0011251 Lupinus albus HOM05D004446 ORTHO05D005346 8.2e-70 267.3 144 86.1
MELO3C023063.2 Cucumis melo HOM05D004446 ORTHO05D005346 1.1e-69 266.9 144 87.5
Eucgr.H02865 Eucalyptus grandis HOM05D004446 ORTHO05D005346 1.1e-69 266.9 144 86.8
PSO063G0015 Papaver somniferum HOM05D004446 ORTHO05D005346 1.1e-69 266.9 144 88.2
Potri.003G173800 Populus trichocarpa HOM05D004446 ORTHO05D005346 1.1e-69 266.9 144 86.8
arahy.Tifrunner.gnm1.ann1.VC13RQ Arachis hypogaea HOM05D004446 ORTHO05D005346 1.4e-69 266.5 144 86.1
Gohir.A10G120100 Gossypium hirsutum HOM05D004446 ORTHO05D005346 1.4e-69 266.5 144 87.5
Gohir.D10G146300 Gossypium hirsutum HOM05D004446 ORTHO05D005346 1.4e-69 266.5 144 87.5
Gorai.011G163400 Gossypium raimondii HOM05D004446 ORTHO05D005346 1.4e-69 266.5 144 87.5
RcHm_v2.0_Chr4g0396561 Rosa chinensis HOM05D004446 ORTHO05D005346 1.4e-69 266.5 144 87.5
CANSAT78G0709 Cannabis sativa HOM05D004446 ORTHO05D005346 1.8e-69 266.2 144 86.8
Duzib212G0284 Durio zibethinus HOM05D004446 ORTHO05D005346 1.8e-69 266.2 144 86.8
Gohir.D10G146200 Gossypium hirsutum HOM05D004446 ORTHO05D005346 1.8e-69 266.2 144 86.8
Gohir.A10G120200 Gossypium hirsutum HOM05D004446 ORTHO05D005346 2.4e-69 265.8 144 86.1
Lalb_Chr03g0036811 Lupinus albus HOM05D004446 ORTHO05D005346 2.4e-69 265.8 144 86.8
PGR044G1212 Punica granatum HOM05D004446 ORTHO05D005346 2.4e-69 265.8 144 86.8
Rhsim09G0047000 Rhododendron simsii HOM05D004446 ORTHO05D005346 2.4e-69 265.8 151 84.8
RhsimUnG0181300 Rhododendron simsii HOM05D004446 ORTHO05D005346 2.4e-69 265.8 151 84.8
Sc19g0005800 Simmondsia chinensis HOM05D004446 ORTHO05D005346 2.4e-69 265.8 144 86.8
VMungo0720G0669 Vigna mungo HOM05D004446 ORTHO05D005346 2.4e-69 265.8 148 82.4
Cc00_g09360 Coffea canephora HOM05D004446 ORTHO05D005346 4.1e-69 265.0 144 86.1
Zm00001eb008370 Zea mays HOM05D004446 ORTHO05D005346 4.1e-69 265.0 144 86.1
Gorai.011G163300 Gossypium raimondii HOM05D004446 ORTHO05D005346 5.3e-69 264.6 144 86.1
Peaxi162Scf00047g01619 Petunia axillaris HOM05D004446 ORTHO05D005346 5.3e-69 264.6 144 87.5
Glyma.10G128100 Glycine max HOM05D004446 ORTHO05D005346 7.0e-69 264.2 144 85.4
Manes.03G155100 Manihot esculenta HOM05D004446 ORTHO05D005346 7.0e-69 264.2 144 86.8
Nitab4.5_0000451g0180 Nicotiana tabacum HOM05D004446 ORTHO05D005346 9.1e-69 263.8 144 87.5
Nitab4.5_0018759g0010 Nicotiana tabacum HOM05D004446 ORTHO05D005346 9.1e-69 263.8 144 87.5
TWI73G1246 Tripterygium wilfordii HOM05D004446 ORTHO05D005346 1.5e-68 263.1 144 84.7
HPP92_008960 Vanilla planifolia HOM05D004446 ORTHO05D005346 2.0e-68 262.7 144 85.4
ATR0736G077 Amborella trichopoda HOM05D004446 ORTHO05D005346 2.6e-68 262.3 160 79.4
CiPaw.01G206200 Carya illinoinensis HOM05D004446 ORTHO05D005346 2.6e-68 262.3 144 85.4
Phvul.007G238600 Phaseolus vulgaris HOM05D004446 ORTHO05D005346 2.6e-68 262.3 144 84.0
Solyc09g091170.4 Solanum lycopersicum HOM05D004446 ORTHO05D005346 2.6e-68 262.3 144 86.8
Sopen09g034140 Solanum pennellii HOM05D004446 ORTHO05D005346 2.6e-68 262.3 144 86.8
TWI09G0335 Tripterygium wilfordii HOM05D004446 ORTHO05D005346 3.5e-68 261.9 144 84.7
arahy.Tifrunner.gnm1.ann1.Q5T5LU Arachis hypogaea HOM05D004446 ORTHO05D005346 5.9e-68 261.2 142 85.2
Lj6g0002383 Lotus japonicus HOM05D004446 ORTHO05D005346 1.0e-67 260.4 144 83.3
Manes.15G048500 Manihot esculenta HOM05D004446 ORTHO05D005346 1.0e-67 260.4 144 85.4
THA.LOC104826105 Tarenaya hassleriana HOM05D004446 ORTHO05D005346 1.0e-67 260.4 144 85.4
vmacro22557 Vaccinium macrocarpon HOM05D004446 ORTHO05D005346 1.0e-67 260.4 154 82.5
TPR.G23640 Trifolium pratense HOM05D004446 ORTHO05D005346 1.3e-67 260.0 144 84.0
Dinv38297 Davidia involucrata HOM05D004446 ORTHO05D005346 2.2e-67 259.2 135 91.9
PGSC0003DMG400011587 Solanum tuberosum HOM05D004446 ORTHO05D005346 2.2e-67 259.2 144 86.1
THA.LOC104816014 Tarenaya hassleriana HOM05D004446 ORTHO05D005346 2.2e-67 259.2 144 85.4
Medtr1g046380 Medicago truncatula HOM05D004446 ORTHO05D005346 5.0e-67 258.1 144 84.0
Psat6g109720 Pisum sativum HOM05D004446 ORTHO05D005346 5.0e-67 258.1 144 84.0
AL1G14310 Arabidopsis lyrata HOM05D004446 ORTHO05D005346 8.5e-67 257.3 144 84.0
Zm00001eb401250 Zea mays HOM05D004446 ORTHO05D005346 8.5e-67 257.3 144 83.3
AT1G04630 Arabidopsis thaliana HOM05D004446 ORTHO05D005346 1.9e-66 256.1 144 83.3
Carub.0001s0386 Capsella rubella HOM05D004446 ORTHO05D005346 1.9e-66 256.1 144 83.3
CARHR003980 Cardamine hirsuta HOM05D004446 ORTHO05D005346 1.9e-66 256.1 144 83.3
Aa31LG1G20240 Aethionema arabicum HOM05D004446 ORTHO05D005346 2.5e-66 255.8 144 82.6
Ca_11789_v3 Cicer arietinum L. HOM05D004446 ORTHO05D005346 2.5e-66 255.8 144 82.6
AL4G28840 Arabidopsis lyrata HOM05D004446 ORTHO05D005346 4.2e-66 255.0 144 83.3
Migut.G00605 Erythranthe guttata HOM05D004446 ORTHO05D005346 4.2e-66 255.0 144 85.4
BcaC07g36901 Brassica carinata HOM05D004446 ORTHO05D005346 9.4e-66 253.8 144 82.6
A08p36850 Brassica napus HOM05D004446 ORTHO05D005346 9.4e-66 253.8 144 82.6
A09p67770 Brassica napus HOM05D004446 ORTHO05D005346 9.4e-66 253.8 144 82.6
A10p03060 Brassica napus HOM05D004446 ORTHO05D005346 9.4e-66 253.8 144 82.6
C05p02820 Brassica napus HOM05D004446 ORTHO05D005346 9.4e-66 253.8 144 82.6
C08p01220 Brassica napus HOM05D004446 ORTHO05D005346 9.4e-66 253.8 144 82.6
BolC5t29065H Brassica oleracea HOM05D004446 ORTHO05D005346 9.4e-66 253.8 144 82.6
BolC8t46930H Brassica oleracea HOM05D004446 ORTHO05D005346 9.4e-66 253.8 144 82.6
BraA08t35586Z Brassica rapa HOM05D004446 ORTHO05D005346 9.4e-66 253.8 144 82.6
BraA09t42108Z Brassica rapa HOM05D004446 ORTHO05D005346 9.4e-66 253.8 144 82.6
BraA10t42579Z Brassica rapa HOM05D004446 ORTHO05D005346 9.4e-66 253.8 144 82.6
AUR62035909 Chenopodium quinoa HOM05D004446 ORTHO05D005346 9.4e-66 253.8 135 88.9
Thhalv10017386m.g Eutrema salsugineum HOM05D004446 ORTHO05D005346 9.4e-66 253.8 144 82.6
Sp1g03460 Schrenkiella parvula HOM05D004446 ORTHO05D005346 9.4e-66 253.8 144 82.6
Aa31LG5G4110 Aethionema arabicum HOM05D004446 ORTHO05D005346 1.2e-65 253.4 144 81.9
BcaB03g13480 Brassica carinata HOM05D004446 ORTHO05D005346 1.2e-65 253.4 144 82.6
Thhalv10009042m.g Eutrema salsugineum HOM05D004446 ORTHO05D005346 1.2e-65 253.4 144 82.6
Hma1.2p1_2329F.1_g320020 Hydrangea macrophylla HOM05D004446 ORTHO05D005346 1.6e-65 253.1 175 72.6
CARHR127230 Cardamine hirsuta HOM05D004446 ORTHO05D005346 2.7e-65 252.3 144 81.9
Carub.0004s1468 Capsella rubella HOM05D004446 ORTHO05D005346 3.6e-65 251.9 144 82.6
QL06p022604 Quercus lobata HOM05D004446 ORTHO05D005346 6.1e-65 251.1 143 81.1
Sp4g15520 Schrenkiella parvula HOM05D004446 ORTHO05D005346 6.1e-65 251.1 144 81.2
AT2G33220 Arabidopsis thaliana HOM05D004446 ORTHO05D005346 8.0e-65 250.8 142 83.1
Os03g0192400 Oryza sativa ssp. japonica HOM05D004446 ORTHO05D005346 1.4e-61 240.0 141 79.4
SEGI_11387 Sequoiadendron giganteum HOM05D004446 ORTHO05D005346 1.1e-58 230.3 144 74.3
Actinidia25089 Actinidia chinensis HOM05D004446 ORTHO05D005346 6.1e-57 224.6 179 64.2
Ah.13g075110 Amaranthus hybridus HOM05D004446 ORTHO05D005346 3.4e-55 218.8 144 73.6
BcaC07g42166 Brassica carinata HOM05D004446 ORTHO05D005346 4.4e-55 218.4 144 75.0
Sabra03G0127300 Salix brachista HOM05D004446 ORTHO05D005346 5.7e-55 218.0 260 48.1
Sabra01G0039000 Salix brachista HOM05D004446 ORTHO05D005346 6.5e-51 204.5 308 41.9
AagrBONN_evm.TU.Sc2ySwM_344.5082 Anthoceros agrestis HOM05D004446 ORTHO05D005346 7.2e-50 201.1 144 66.0
Mapoly0001s0090 Marchantia polymorpha HOM05D004446 ORTHO05D005346 1.2e-47 193.7 142 66.9
BolC3t14561H Brassica oleracea HOM05D004446 ORTHO05D005346 1.5e-47 193.4 139 70.5
Pp3c5_4240 Physcomitrium patens HOM05D004446 ORTHO05D005346 7.5e-47 191.0 138 64.5
unitig_748.g8289 Utricularia gibba HOM05D002765 ORTHO05D003083 1.7e-46 189.9 142 67.6
BolC8t52743H Brassica oleracea HOM05D004446 ORTHO05D005346 2.2e-46 189.5 117 79.5
Pp3c16_2570 Physcomitrium patens HOM05D004446 ORTHO05D005346 4.9e-46 188.3 138 65.2
CBR_g9031 Chara braunii HOM05D004446 ORTHO05D005346 2.0e-44 183.0 138 63.0
Dinv27149 Davidia involucrata HOM05D004446 ORTHO05D005346 2.9e-38 162.5 82 91.5
GSVIVG01028486001 Vitis vinifera HOM05D004446 ORTHO05D005346 1.4e-37 160.2 84 88.1
C08p52100 Brassica napus HOM05D004446 ORTHO05D005346 1.7e-35 153.3 93 76.3
MCO16G128 Micromonas commoda HOM05D004446 ORTHO05D005346 2.8e-33 146.0 142 50.7
CAN.G1588.2 Capsicum annuum HOM05D004446 ORTHO05D005346 3.6e-33 145.6 75 90.7
Oeu008823.1 Olea europaea HOM05D004446 ORTHO05D005346 2.3e-32 142.9 72 90.3
RhsimUnG0181500 Rhododendron simsii HOM05D004446 ORTHO05D005346 5.2e-32 141.7 75 85.3
Haze_11535 Corylus avellana HOM05D004446 ORTHO05D005346 1.3e-30 137.1 88 71.6
A03p18650 Brassica napus HOM05D004446 ORTHO05D005346 3.7e-30 135.6 73 83.6
BraA03t11124Z Brassica rapa HOM05D004446 ORTHO05D005346 3.7e-30 135.6 73 83.6
SMO364G0175 Selaginella moellendorffii HOM05D004446 ORTHO05D005346 1.3e-27 127.1 143 46.9
BcaC01g05851 Brassica carinata HOM05D004446 ORTHO05D005346 3.3e-26 122.5 77 76.6
Cre16.g664600 Chlamydomonas reinhardtii HOM05D004446 ORTHO05D005346 5.6e-26 121.7 133 45.9
Zm00001eb305890 Zea mays HOM05D004446 ORTHO05D005346 3.6e-25 119.0 70 75.7
MBI10_g44933_MAGBIO Magnolia biondii HOM05D004446 ORTHO05D005346 4.7e-25 118.6 63 88.9
Oeu008826.1 Olea europaea HOM05D004446 ORTHO05D005346 8.1e-25 117.9 67 82.1
MBI10_g35300_MAGBIO Magnolia biondii HOM05D004446 ORTHO05D005346 3.4e-23 112.5 154 48.1
Cc05_g03600 Coffea canephora HOM05D004446 ORTHO05D005346 7.1e-21 104.8 74 68.9
SHI08306 Sapria himalayana HOM05D004446 ORTHO05D005346 4.9e-14 82.0 63 61.9
C03p21790 Brassica napus HOM05D004446 ORTHO05D005346 2.1e-12 76.6 45 80.0
SHI22881 Sapria himalayana HOM05D004446 ORTHO05D005346 3.9e-11 72.4 54 66.7
CSS0009466 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 2.9e-06 56.2 30 73.3
unitig_32.g10861 Utricularia gibba HOM05D004446 ORTHO05D005346 6.4e-06 55.1 95 41.1


User provided reference genes

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