Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA238G1385 Erigeron canadensis HOM05D007382 ORTHO05D009012 9.8e-80 300.1 150 100.0
HanXRQChr07g0195861 Helianthus annuus HOM05D007382 ORTHO05D009012 7.6e-56 220.7 143 73.4
HanXRQChr10g0297271 Helianthus annuus HOM05D007382 ORTHO05D009012 8.6e-52 207.2 143 69.2
Lsat_1_v5_gn_2_110741 Lactuca sativa HOM05D007382 ORTHO05D009012 7.3e-51 204.1 145 69.0
Lsat_1_v5_gn_2_111101 Lactuca sativa HOM05D007382 ORTHO05D009012 7.3e-51 204.1 145 69.0
Lsat_1_v5_gn_2_110841 Lactuca sativa HOM05D007382 ORTHO05D009012 8.1e-50 200.7 145 67.6
CSS0017861 Camellia sinensis var. sinensis HOM05D007382 ORTHO05D009012 2.0e-40 169.5 145 57.2
Hma1.2p1_0111F.1_g053520 Hydrangea macrophylla HOM05D007382 ORTHO05D009012 4.5e-40 168.3 143 57.3
Dinv37282 Davidia involucrata HOM05D007382 ORTHO05D009012 5.8e-40 167.9 145 57.9
Hma1.2p1_0111F.1_g053480 Hydrangea macrophylla HOM05D007382 ORTHO05D009012 7.6e-40 167.5 143 57.3
GSVIVG01025574001 Vitis vinifera HOM05D002855 ORTHO05D009676 7.9e-37 157.5 136 59.6
Nitab4.5_0007103g0020 Nicotiana tabacum HOM05D007382 ORTHO05D009012 1.8e-36 156.4 143 52.4
TAR369G0081 Trochodendron aralioides HOM05D007382 ORTHO05D009012 2.3e-36 156.0 143 56.6
Oeu029114.1 Olea europaea HOM05D007382 ORTHO05D009012 3.0e-36 155.6 142 56.3
Nitab4.5_0000202g0370 Nicotiana tabacum HOM05D007382 ORTHO05D009012 1.9e-35 152.9 138 52.9
MSTRG.19120 Avicennia marina HOM05D007382 ORTHO05D009012 4.3e-35 151.8 142 55.6
AUR62042292 Chenopodium quinoa HOM05D002855 ORTHO05D009012 4.3e-35 151.8 150 54.0
Thecc.05G050100 Theobroma cacao HOM05D007382 ORTHO05D009012 5.6e-35 151.4 129 55.0
Ciclev10012925m.g Citrus clementina HOM05D007382 ORTHO05D009012 7.4e-35 151.0 141 51.8
Duzib093G1372 Durio zibethinus HOM05D007382 ORTHO05D009012 1.1e-33 147.1 118 58.5
Migut.J00393 Erythranthe guttata HOM05D007382 ORTHO05D009012 1.1e-33 147.1 144 54.9
Peaxi162Scf00472g00081 Petunia axillaris HOM05D007382 ORTHO05D009012 1.1e-33 147.1 141 51.1
Prupe.6G245200 Prunus persica HOM05D007382 ORTHO05D009012 3.1e-33 145.6 141 51.8
COL.COLO4_10307 Corchorus olitorius HOM05D007382 ORTHO05D009012 1.5e-32 143.3 129 55.8
Nn2g10574 Nelumbo nucifera HOM05D007382 ORTHO05D009012 1.5e-32 143.3 142 52.1
QL07p045887 Quercus lobata HOM05D007382 ORTHO05D009012 2.0e-32 142.9 141 51.8
Cfa017470 Carpinus fangiana HOM05D007382 ORTHO05D009012 7.6e-32 141.0 137 50.4
CAN.G435.4 Capsicum annuum HOM05D007382 ORTHO05D009012 9.9e-32 140.6 135 49.6
AUR62036838 Chenopodium quinoa HOM05D007382 ORTHO05D009012 1.3e-31 140.2 169 47.9
Haze_20685 Corylus avellana HOM05D007382 ORTHO05D009012 1.3e-31 140.2 137 51.1
Sopen10g033880 Solanum pennellii HOM05D007382 ORTHO05D009012 1.7e-31 139.8 135 51.9
CiPaw.10G139200 Carya illinoinensis HOM05D007382 ORTHO05D009012 2.2e-31 139.4 137 51.8
SGA_v2.0_scaffold126G33863 Striga asiatica HOM05D007382 ORTHO05D009012 3.8e-31 138.7 132 54.5
PGSC0003DMG400038088 Solanum tuberosum HOM05D007382 ORTHO05D009012 4.9e-31 138.3 127 52.8
Phvul.001G173000 Phaseolus vulgaris HOM05D007382 ORTHO05D009012 6.4e-31 137.9 143 47.6
Solyc10g084440.3 Solanum lycopersicum HOM05D007382 ORTHO05D009012 6.4e-31 137.9 129 52.7
Ah.08g212080 Amaranthus hybridus HOM05D007382 ORTHO05D009012 1.1e-30 137.1 165 43.6
Nn3g20330 Nelumbo nucifera HOM05D007382 ORTHO05D009012 1.4e-30 136.7 140 50.7
EL10Ac7g17270 Beta vulgaris HOM05D007382 ORTHO05D009012 1.9e-30 136.3 143 49.7
Sabra06G0166500 Salix brachista HOM05D007382 ORTHO05D009012 1.9e-30 136.3 140 55.0
Ca_08808_v3 Cicer arietinum L. HOM05D007382 ORTHO05D009012 2.4e-30 136.0 151 49.0
Sc01g0003740 Simmondsia chinensis HOM05D007382 ORTHO05D009012 2.4e-30 136.0 147 49.0
Glyma.03G175900 Glycine max HOM05D007382 ORTHO05D009012 3.2e-30 135.6 148 49.3
Glyma.19G176400 Glycine max HOM05D007382 ORTHO05D009012 4.2e-30 135.2 146 50.0
FAN05G3594 Fragaria x ananassa HOM05D007382 ORTHO05D009012 5.5e-30 134.8 136 55.1
Potri.006G216000 Populus trichocarpa HOM05D007382 ORTHO05D009012 5.5e-30 134.8 139 54.0
RcHm_v2.0_Chr3g0468081 Rosa chinensis HOM05D007382 ORTHO05D009012 5.5e-30 134.8 134 52.2
Eucgr.A01209 Eucalyptus grandis HOM05D007382 ORTHO05D009012 7.1e-30 134.4 131 50.4
CANSAT80G2903 Cannabis sativa HOM05D007382 ORTHO05D009012 9.3e-30 134.0 140 49.3
Gohir.D04G117000 Gossypium hirsutum HOM05D007382 ORTHO05D009012 9.3e-30 134.0 129 51.2
Gorai.009G421900 Gossypium raimondii HOM05D007382 ORTHO05D009012 9.3e-30 134.0 129 51.2
Manes.09G071800 Manihot esculenta HOM05D007382 ORTHO05D009012 9.3e-30 134.0 148 47.3
MD12G1130200 Malus domestica HOM05D007382 ORTHO05D009012 1.2e-29 133.7 150 48.7
PGSC0003DMG401010988 Solanum tuberosum HOM05D007382 ORTHO05D009012 1.2e-29 133.7 124 53.2
VMungo1383G3160 Vigna mungo HOM05D007382 ORTHO05D009012 1.2e-29 133.7 143 46.2
FAN14G4413 Fragaria x ananassa HOM05D002855 ORTHO05D009012 1.6e-29 133.3 136 54.4
Cc06_g15490 Coffea canephora HOM05D007382 ORTHO05D009012 2.1e-29 132.9 139 48.2
CsaV3_4G024470 Cucumis sativus L. HOM05D007382 ORTHO05D009012 2.7e-29 132.5 148 48.0
FAN09G0189 Fragaria x ananassa HOM05D007382 ORTHO05D009012 2.7e-29 132.5 136 54.4
FAN09G4246 Fragaria x ananassa HOM05D005749 ORTHO05D007208 2.7e-29 132.5 136 54.4
MELO3C003080.2 Cucumis melo HOM05D007382 ORTHO05D009012 3.5e-29 132.1 148 48.0
Gohir.A04G077800 Gossypium hirsutum HOM05D007382 ORTHO05D009012 3.5e-29 132.1 129 51.2
FvH4_6g14870 Fragaria vesca HOM05D007382 ORTHO05D009012 4.6e-29 131.7 136 53.7
TWI77G0838 Tripterygium wilfordii HOM05D007382 ORTHO05D009012 1.0e-28 130.6 129 51.2
Sopen07g005520 Solanum pennellii HOM05D007382 ORTHO05D009012 3.0e-28 129.0 116 54.3
Sopen09g026050 Solanum pennellii HOM05D007382 ORTHO05D009012 6.7e-28 127.9 116 51.7
AL5G39780 Arabidopsis lyrata HOM05D007382 ORTHO05D009012 1.1e-27 127.1 130 50.0
Hund10951 Selenicereus undatus HOM05D007382 ORTHO05D009012 1.1e-27 127.1 156 44.9
MBI04_g38440_MAGBIO Magnolia biondii HOM05D007382 ORTHO05D009012 1.5e-27 126.7 145 49.7
MBI04_g28758_MAGBIO Magnolia biondii HOM05D007382 ORTHO05D009012 1.9e-27 126.3 145 49.7
Medtr7g100230 Medicago truncatula HOM05D007382 ORTHO05D009012 1.9e-27 126.3 144 45.1
ClCG04G008690 Citrullus lanatus HOM05D007382 ORTHO05D009012 3.3e-27 125.6 117 51.3
Solyc07g014660.3 Solanum lycopersicum HOM05D007382 ORTHO05D009012 3.3e-27 125.6 116 52.6
PGSC0003DMG400037466 Solanum tuberosum HOM05D007382 ORTHO05D009012 4.3e-27 125.2 116 51.7
BcaC02g09988 Brassica carinata HOM05D007382 ORTHO05D009012 5.6e-27 124.8 131 46.6
CDE05G2022 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 5.6e-27 124.8 133 50.4
Aa31LG10G12820 Aethionema arabicum HOM05D007382 ORTHO05D009012 7.4e-27 124.4 134 49.3
BcaB02g08277 Brassica carinata HOM05D007382 ORTHO05D009012 9.6e-27 124.0 133 47.4
Carub.0005s2494 Capsella rubella HOM05D007382 ORTHO05D009012 3.7e-26 122.1 117 53.8
PSO384G2862 Papaver somniferum HOM05D007382 ORTHO05D009012 4.8e-26 121.7 187 39.6
Psat7g058560 Pisum sativum HOM05D007382 ORTHO05D009012 4.8e-26 121.7 136 45.6
Sed0019756 Sechium edule HOM05D007382 ORTHO05D009012 1.4e-25 120.2 149 45.6
Medtr7g100200 Medicago truncatula HOM05D007382 ORTHO05D009012 2.4e-25 119.4 133 51.9
Sp5g04630 Schrenkiella parvula HOM05D007382 ORTHO05D009012 3.1e-25 119.0 125 48.8
TPR.G21464 Trifolium pratense HOM05D007382 ORTHO05D009012 3.1e-25 119.0 175 41.7
ATR0709G053 Amborella trichopoda HOM05D007382 ORTHO05D009012 4.0e-25 118.6 126 44.4
CARHR168440 Cardamine hirsuta HOM05D007382 ORTHO05D009012 1.5e-24 116.7 118 52.5
Sed0025265 Sechium edule HOM05D007382 ORTHO05D009012 1.5e-24 116.7 147 44.9
Lj1g0005181 Lotus japonicus HOM05D007382 ORTHO05D009012 4.5e-24 115.2 130 46.2
Zm00001eb148770 Zea mays HOM05D007382 ORTHO05D009012 1.3e-23 113.6 117 47.9
Aqoxy5G00351 Aquilegia oxysepala HOM05D007382 ORTHO05D009012 3.8e-23 112.1 118 44.1
AT3G58090 Arabidopsis thaliana HOM05D000180 ORTHO05D000099 1.9e-22 109.8 110 51.8
C04p34300 Brassica napus HOM05D000180 ORTHO05D000099 2.5e-22 109.4 139 43.9
AUR62043938 Chenopodium quinoa HOM05D002855 ORTHO05D004406 2.5e-22 109.4 142 46.5
BolC4t24990H Brassica oleracea HOM05D000180 ORTHO05D000099 5.5e-22 108.2 139 43.9
unitig_744.g24666 Utricularia gibba HOM05D007382 ORTHO05D009012 5.5e-22 108.2 142 44.4
A04p02730 Brassica napus HOM05D000180 ORTHO05D000099 3.5e-21 105.5 100 51.0
BraA04t15999Z Brassica rapa HOM05D000180 ORTHO05D000099 3.5e-21 105.5 100 51.0
PGSC0003DMG400035622 Solanum tuberosum HOM05D007382 ORTHO05D009012 4.6e-21 105.1 105 44.8
CiPaw.15G123900 Carya illinoinensis HOM05D007382 ORTHO05D009012 1.0e-20 104.0 131 45.0
Os01g0835600 Oryza sativa ssp. japonica HOM05D007382 ORTHO05D009012 3.0e-20 102.4 116 42.2
CDE09G1151 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 7.4e-19 97.8 148 40.5
VMungo1080G1211 Vigna mungo HOM05D007382 ORTHO05D009012 9.7e-19 97.4 73 57.5
HPP92_019795 Vanilla planifolia HOM05D007382 ORTHO05D009012 1.8e-17 93.2 108 42.6
SEGI_34495 Sequoiadendron giganteum HOM05D007382 ORTHO05D009012 4.1e-17 92.0 138 39.9
Lalb_Chr20g0113021 Lupinus albus HOM05D007382 ORTHO05D009012 1.5e-16 90.1 94 44.7
CDE12G0689 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 5.9e-16 88.2 99 43.4
Lalb_Chr25g0289341 Lupinus albus HOM05D007382 ORTHO05D009012 3.8e-15 85.5 91 48.4
SMO147G0006 Selaginella moellendorffii HOM05D016889 ORTHO05D026570 2.4e-09 66.2 52 57.7
SEGI_03776 Sequoiadendron giganteum HOM05D016889 ORTHO05D009012 5.3e-09 65.1 66 45.5
ATR0665G317 Amborella trichopoda HOM05D007382 ORTHO05D009012 2.0e-08 63.2 112 36.6
ATR0829G079 Amborella trichopoda HOM05D016889 ORTHO05D026570 1.7e-07 60.1 54 50.0
TAR633G0943 Trochodendron aralioides HOM05D007382 ORTHO05D009012 2.2e-07 59.7 84 39.3
CBR_g41746 Chara braunii HOM05D007382 ORTHO05D009012 5.0e-07 58.5 104 35.6
Pp3c14_21840 Physcomitrium patens HOM05D016889 ORTHO05D009012 4.2e-06 55.5 147 32.0
Gohir.D09G092032 Gossypium hirsutum HOM05D001312 ORTHO05D001832 5.5e-06 55.1 63 47.6
Gorai.006G108600 Gossypium raimondii HOM05D001312 ORTHO05D001832 5.5e-06 55.1 63 47.6
Gohir.A09G092100 Gossypium hirsutum HOM05D001312 ORTHO05D001832 7.2e-06 54.7 77 42.9
COL.COLO4_19275 Corchorus olitorius HOM05D001312 ORTHO05D001832 9.4e-06 54.3 49 57.1


User provided reference genes

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