Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA238G1326 Erigeron canadensis HOM05D006992 ORTHO05D008752 1.3e-97 359.8 185 100.0
Lsat_1_v5_gn_2_67081 Lactuca sativa HOM05D006992 ORTHO05D008752 4.2e-80 301.6 177 88.7
CSS0031345 Camellia sinensis var. sinensis HOM05D006992 ORTHO05D008752 5.6e-77 291.2 175 85.7
HanXRQChr14g0445751 Helianthus annuus HOM05D006992 ORTHO05D008752 2.8e-76 288.9 178 84.3
Cc02_g31290 Coffea canephora HOM05D006992 ORTHO05D008752 3.4e-74 282.0 175 82.3
CiPaw.07G008900 Carya illinoinensis HOM05D006992 ORTHO05D008752 1.1e-72 276.9 175 78.3
Nn3g21348 Nelumbo nucifera HOM05D006992 ORTHO05D008752 1.1e-72 276.9 175 80.0
Actinidia33837 Actinidia chinensis HOM05D006992 ORTHO05D008752 2.4e-72 275.8 175 78.9
Sc09g0003710 Simmondsia chinensis HOM05D006992 ORTHO05D008752 7.1e-72 274.2 175 76.0
Atru.chr2.657 Acer truncatum HOM05D006992 ORTHO05D008752 2.1e-71 272.7 174 78.7
ClCG03G016340 Citrullus lanatus HOM05D006992 ORTHO05D008752 3.5e-71 271.9 175 77.7
MD12G1234200 Malus domestica HOM05D006992 ORTHO05D008752 4.6e-71 271.6 175 76.0
CAN.G424.13 Capsicum annuum HOM05D006992 ORTHO05D008752 7.9e-71 270.8 176 78.4
Ciclev10002483m.g Citrus clementina HOM05D006992 ORTHO05D008752 7.9e-71 270.8 175 77.7
CiPaw.08G178000 Carya illinoinensis HOM05D006992 ORTHO05D008752 1.0e-70 270.4 175 76.6
MELO3C015384.2 Cucumis melo HOM05D006992 ORTHO05D008752 1.8e-70 269.6 175 76.6
Oeu012474.1 Olea europaea HOM05D006992 ORTHO05D008752 3.0e-70 268.9 172 80.8
PSO832G0773 Papaver somniferum HOM05D006992 ORTHO05D008752 3.9e-70 268.5 174 76.4
TWI36G0139 Tripterygium wilfordii HOM05D006992 ORTHO05D008752 3.9e-70 268.5 175 76.0
PGR083G1999 Punica granatum HOM05D006992 ORTHO05D008752 5.1e-70 268.1 175 75.4
THA.LOC104818652 Tarenaya hassleriana HOM05D006992 ORTHO05D008752 5.1e-70 268.1 180 72.2
Eucgr.B01740 Eucalyptus grandis HOM05D006992 ORTHO05D008752 8.7e-70 267.3 175 75.4
PSO210G3204 Papaver somniferum HOM05D006992 ORTHO05D008752 8.7e-70 267.3 174 75.9
QL03p000176 Quercus lobata HOM05D006992 ORTHO05D008752 8.7e-70 267.3 174 75.9
RcHm_v2.0_Chr3g0452481 Rosa chinensis HOM05D006992 ORTHO05D008752 8.7e-70 267.3 175 76.0
Cfa006481 Carpinus fangiana HOM05D006992 ORTHO05D008752 1.5e-69 266.5 172 78.5
TAR633G1762 Trochodendron aralioides HOM05D006992 ORTHO05D008752 1.5e-69 266.5 175 76.0
CsaV3_1G039620 Cucumis sativus L. HOM05D006992 ORTHO05D008752 3.3e-69 265.4 175 74.9
Prupe.6G337300 Prunus persica HOM05D006992 ORTHO05D008752 3.3e-69 265.4 175 73.7
Sed0003148 Sechium edule HOM05D006992 ORTHO05D008752 5.6e-69 264.6 175 77.7
Gohir.A13G106100 Gossypium hirsutum HOM05D006992 ORTHO05D008752 1.3e-68 263.5 175 75.4
Rhsim05G0148900 Rhododendron simsii HOM05D006992 ORTHO05D008752 1.3e-68 263.5 173 78.0
CANSAT54G1892 Cannabis sativa HOM05D006992 ORTHO05D008752 2.8e-68 262.3 175 74.9
vmacro19674 Vaccinium macrocarpon HOM05D006992 ORTHO05D008752 2.8e-68 262.3 173 77.5
Gorai.013G122400 Gossypium raimondii HOM05D006992 ORTHO05D008752 3.6e-68 261.9 175 74.9
Peaxi162Scf00103g00035 Petunia axillaris HOM05D006992 ORTHO05D008752 3.6e-68 261.9 175 74.9
Nitab4.5_0001410g0140 Nicotiana tabacum HOM05D006992 ORTHO05D008752 4.8e-68 261.5 172 79.1
Thecc.05G291400 Theobroma cacao HOM05D006992 ORTHO05D008752 4.8e-68 261.5 174 77.0
FvH4_6g03930 Fragaria vesca HOM05D006992 ORTHO05D008752 6.2e-68 261.2 178 75.3
Hund06999 Selenicereus undatus HOM05D006992 ORTHO05D008752 6.2e-68 261.2 171 77.2
ATR0706G207 Amborella trichopoda HOM05D006992 ORTHO05D008752 8.1e-68 260.8 182 70.9
Gohir.D13G108900 Gossypium hirsutum HOM05D006992 ORTHO05D008752 1.1e-67 260.4 175 74.3
AL3G15290 Arabidopsis lyrata HOM05D006992 ORTHO05D008752 1.4e-67 260.0 180 71.1
AT3G04950 Arabidopsis thaliana HOM05D006992 ORTHO05D008752 1.4e-67 260.0 180 71.1
Migut.N01946 Erythranthe guttata HOM05D006992 ORTHO05D008752 1.4e-67 260.0 176 73.9
EL10Ac4g09207 Beta vulgaris HOM05D006992 ORTHO05D008752 4.0e-67 258.5 172 76.7
CDE02G3150 Ceratophyllum demersum HOM05D006992 ORTHO05D008752 4.0e-67 258.5 174 73.6
Nitab4.5_0004284g0080 Nicotiana tabacum HOM05D006992 ORTHO05D008752 5.3e-67 258.1 172 77.9
PGSC0003DMG400022358 Solanum tuberosum HOM05D006992 ORTHO05D008752 9.0e-67 257.3 175 72.6
GSVIVG01021889001 Vitis vinifera HOM05D006992 ORTHO05D008752 9.0e-67 257.3 175 72.6
CARHR079260 Cardamine hirsuta HOM05D006992 ORTHO05D008752 1.5e-66 256.5 180 70.0
COL.COLO4_13636 Corchorus olitorius HOM05D004868 ORTHO05D006030 1.5e-66 256.5 172 74.4
Solyc02g079130.3 Solanum lycopersicum HOM05D006992 ORTHO05D008752 1.5e-66 256.5 175 72.6
Sopen02g023930 Solanum pennellii HOM05D006992 ORTHO05D008752 1.5e-66 256.5 175 72.6
Carub.0003s0417 Capsella rubella HOM05D006992 ORTHO05D008752 2.0e-66 256.1 180 70.0
Glyma.19G241400 Glycine max HOM05D006992 ORTHO05D008752 2.0e-66 256.1 175 71.4
Thhalv10021439m.g Eutrema salsugineum HOM05D006992 ORTHO05D008752 3.4e-66 255.4 180 70.6
Phvul.006G097900 Phaseolus vulgaris HOM05D006992 ORTHO05D008752 5.8e-66 254.6 176 71.6
Sp3g03770 Schrenkiella parvula HOM05D006992 ORTHO05D008752 5.8e-66 254.6 175 71.4
FAN09G1577 Fragaria x ananassa HOM05D000167 ORTHO05D000640 7.6e-66 254.2 175 75.4
QL03p000513 Quercus lobata HOM05D006992 ORTHO05D008752 7.6e-66 254.2 197 67.0
FAN14G0596 Fragaria x ananassa HOM05D006992 ORTHO05D008752 1.7e-65 253.1 171 75.4
BcaB04g19286 Brassica carinata HOM05D006992 ORTHO05D008752 2.9e-65 252.3 175 70.3
Manes.09G157800 Manihot esculenta HOM05D006992 ORTHO05D008752 2.9e-65 252.3 175 71.4
BcaC01g04339 Brassica carinata HOM05D006992 ORTHO05D008752 3.8e-65 251.9 180 68.9
FAN05G0877 Fragaria x ananassa HOM05D000167 ORTHO05D000640 4.9e-65 251.5 175 74.3
DCAR_022834 Daucus carota HOM05D006992 ORTHO05D008752 3.2e-64 248.8 172 75.0
AUR62000954 Chenopodium quinoa HOM05D006992 ORTHO05D008752 4.2e-64 248.4 172 74.4
Dinv17742 Davidia involucrata HOM05D004868 ORTHO05D006030 9.3e-64 247.3 147 82.3
FAN05G5181 Fragaria x ananassa HOM05D006992 ORTHO05D008752 1.2e-63 246.9 174 73.0
TPR.G6916 Trifolium pratense HOM05D006992 ORTHO05D008752 1.6e-63 246.5 176 69.9
Ca_09397_v3 Cicer arietinum L. HOM05D006992 ORTHO05D008752 2.1e-63 246.1 178 69.1
BolC3t16415H Brassica oleracea HOM05D006992 ORTHO05D008752 4.6e-63 245.0 177 68.9
Lj1g0025869 Lotus japonicus HOM05D006992 ORTHO05D008752 4.6e-63 245.0 174 70.7
BraA03t12570Z Brassica rapa HOM05D006992 ORTHO05D008752 6.0e-63 244.6 177 68.9
Aqoxy5G00680 Aquilegia oxysepala HOM05D006992 ORTHO05D008752 1.3e-62 243.4 175 70.9
Psat0s2796g0040 Pisum sativum HOM05D006992 ORTHO05D008752 1.3e-62 243.4 176 68.2
A03p33950 Brassica napus HOM05D003164 ORTHO05D003575 2.3e-62 242.7 176 68.8
Potri.013G034100 Populus trichocarpa HOM05D006992 ORTHO05D008752 3.0e-62 242.3 175 69.1
C03p41330 Brassica napus HOM05D003164 ORTHO05D003575 5.1e-62 241.5 176 68.2
Lalb_Chr18g0045231 Lupinus albus HOM05D006992 ORTHO05D008752 1.1e-61 240.4 178 66.9
FAN02G1922 Fragaria x ananassa HOM05D000167 ORTHO05D000640 1.9e-61 239.6 175 72.6
Gorai.007G286500 Gossypium raimondii HOM05D006992 ORTHO05D008752 3.3e-61 238.8 173 68.8
Gohir.A11G256900 Gossypium hirsutum HOM05D006992 ORTHO05D008752 2.1e-60 236.1 175 66.9
Medtr7g114390 Medicago truncatula HOM05D006992 ORTHO05D008752 2.1e-60 236.1 175 65.7
Sabra13G0033300 Salix brachista HOM05D006992 ORTHO05D008752 1.4e-59 233.4 172 68.0
SalBow3G4063 Salvia bowleyana HOM05D006992 ORTHO05D008752 3.1e-59 232.3 187 65.2
SGA_v2.0_scaffold80G25908 Striga asiatica HOM05D006992 ORTHO05D008752 9.0e-59 230.7 171 68.4
arahy.Tifrunner.gnm1.ann1.ZZK2AU Arachis hypogaea HOM05D006992 ORTHO05D008752 5.8e-58 228.0 177 65.5
Migut.N01944 Erythranthe guttata HOM05D006992 ORTHO05D008752 1.3e-57 226.9 175 66.9
Lj7A478T92 Lonicera japonica HOM05D006992 ORTHO05D008752 6.5e-57 224.6 256 52.3
Haze_04310 Corylus avellana HOM05D006992 ORTHO05D008752 2.5e-56 222.6 267 50.9
arahy.Tifrunner.gnm1.ann1.26USVU Arachis hypogaea HOM05D006992 ORTHO05D008752 4.2e-56 221.9 173 65.9
unitig_746.g26840 Utricularia gibba HOM05D006992 ORTHO05D008752 3.5e-55 218.8 139 76.3
Os06g0298500 Oryza sativa ssp. japonica HOM05D006992 ORTHO05D008752 4.6e-55 218.4 176 62.5
AUR62005014 Chenopodium quinoa HOM05D006992 ORTHO05D008752 1.8e-54 216.5 154 73.4
Zm00001eb381040 Zea mays HOM05D006992 ORTHO05D008752 2.8e-52 209.1 176 61.4
HPP92_017993 Vanilla planifolia HOM05D006992 ORTHO05D008752 6.9e-51 204.5 175 58.3
HPP92_026697 Vanilla planifolia HOM05D006992 ORTHO05D008752 1.3e-49 200.3 175 57.1
SEGI_08689 Sequoiadendron giganteum HOM05D006992 ORTHO05D008752 1.6e-47 193.4 174 57.5
Glyma.03G244000 Glycine max HOM05D006992 ORTHO05D008752 5.3e-43 178.3 140 65.0
Ca_30169_v3 Cicer arietinum L. HOM05D006992 ORTHO05D008752 3.4e-42 175.6 136 67.6
VMungo0540G1333 Vigna mungo HOM05D006992 ORTHO05D008752 1.3e-41 173.7 135 66.7
Cpa.g.sc117.39 Carica papaya HOM05D004868 ORTHO05D006030 4.2e-40 168.7 100 83.0
Gohir.D11G266700 Gossypium hirsutum HOM05D006992 ORTHO05D008752 5.5e-40 168.3 134 63.4
Gohir.D03G094700 Gossypium hirsutum HOM05D006992 ORTHO05D008752 1.7e-33 146.7 96 71.9
PSO210G4341 Papaver somniferum HOM05D006992 ORTHO05D008752 2.9e-33 146.0 125 59.2
PSO339G2351 Papaver somniferum HOM05D006992 ORTHO05D008752 2.9e-33 146.0 125 58.4
PSO384G0024 Papaver somniferum HOM05D006992 ORTHO05D008752 2.7e-31 139.4 125 56.0
FAN05G0951 Fragaria x ananassa HOM05D000167 ORTHO05D000640 5.2e-30 135.2 134 58.2
SEGI_13740 Sequoiadendron giganteum HOM05D006992 ORTHO05D008752 3.3e-29 132.5 133 52.6
Aa31LG5G15340 Aethionema arabicum HOM05D006992 ORTHO05D008752 5.7e-29 131.7 76 78.9
Gorai.001G169400 Gossypium raimondii HOM05D006992 ORTHO05D008752 1.1e-27 127.5 79 75.9
Gohir.D07G141600 Gossypium hirsutum HOM05D006992 ORTHO05D008752 1.8e-27 126.7 78 76.9
Gohir.D12G044200 Gossypium hirsutum HOM05D006992 ORTHO05D008752 2.0e-26 123.2 79 73.4
SMO361G0250 Selaginella moellendorffii HOM05D006992 ORTHO05D008752 1.8e-22 110.2 158 43.7
RcHm_v2.0_Chr1g0321781 Rosa chinensis HOM05D006992 ORTHO05D008752 4.1e-19 99.0 61 75.4
RcHm_v2.0_Chr6g0246461 Rosa chinensis HOM05D006992 ORTHO05D008752 1.2e-18 97.4 61 73.8
RcHm_v2.0_Chr3g0452521 Rosa chinensis HOM05D006992 ORTHO05D008752 2.5e-16 89.7 68 69.1
VMungo0331G0785 Vigna mungo HOM05D006992 ORTHO05D008752 9.4e-16 87.8 77 57.1
Gohir.D03G082200 Gossypium hirsutum HOM05D006992 ORTHO05D008752 1.2e-15 87.4 54 77.8
Sp3g03780 Schrenkiella parvula HOM05D000160 ORTHO05D000914 2.0e-10 70.1 39 82.1
Gorai.010G111000 Gossypium raimondii HOM05D001408 ORTHO05D001312 5.9e-10 68.6 40 77.5
Gohir.D06G096300 Gossypium hirsutum HOM05D001408 ORTHO05D001312 5.0e-09 65.5 40 72.5
Gorai.008G101100 Gossypium raimondii HOM05D006061 ORTHO05D007450 6.5e-09 65.1 39 76.9
RcHm_v2.0_Chr3g0452531 Rosa chinensis HOM05D006992 ORTHO05D008752 8.6e-09 64.7 35 88.6


User provided reference genes

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